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Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	putP
Gene Synonym(s)	ECK1006, b1015, JW1001, putC^[1], putC
Product Desc.	PutP proline SSS transporter^[2]^[3] Proline/Na+, Li+ symport protein; also transports propionate (Reed, 2006)^[4]
Product Synonyms(s)	proline:sodium symporter^[1], B1015^[2]^[1], PutC^[2]^[1], PutP^[2]^[1] , ECK1006, JW1001, putC, b1015
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): putP^[2]
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	putP
Mnemonic	Proline utilization
Synonyms	ECK1006, b1015, JW1001, putC^[1], putC
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	23.25 minutes	MG1655: 1078528..1080036 <gbrowseImage> name=NC_000913:1078528..1080036 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 1095589..1097097 <gbrowseImage> name=NC_012967:1095589..1097097 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 981496..983004 <gbrowseImage> name=NC_012759:981496..983004 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 1079727..1081235 <gbrowseImage> name=NC_007779:1079727..1081235 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 1132456..1133964 <gbrowseImage> name=NC_010473:1132456..1133964 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
Coding Start (SO:0000323)	MG1655	1078528	Edman degradation	PMID:1567896
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
ΔputP (Keio:JW1001)	deletion	deletion			PMID:16738554	Shigen CGSC8982^[5]
putPR257C		R257C		Sodium-independent binding affinity for proline			seeded from UniProt:P07117
putPR376E,Q		R376E,Q		No change in activity			seeded from UniProt:P07117
putPR376K		R376K		Loss of activity			seeded from UniProt:P07117
putP5::Tn5						CGSC:39415
ΔputP760::kan					PMID:16738554	CGSC:102552
putAP(del)101			Auxotrophies	Proline Auxotroph	PMID:6355059	Strains: RM2
putP putA⁺			Resistant to	Dehydroproline resistance	PMID:7016835	Strain:CSH4	table 2
putP putA⁺			Resistant to	L-Azetidine-2-carboxylate resistance	PMID:7016835	Strain:CSH4	table 2
putP in strain C4			Resistant to	L-Azetidine-2-carboxylate resistance	PMID:4865475	Strain: C4	Table 1
putP in strain C4			Resistant to	Dehydroproline resistance	PMID:4865475	Strain: C4	Table 1
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW1001	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCGCTATTAGCACACCGATGTT Primer 2:CCGCTTTCCTGCAACCGTGACGG
7B5	Kohara Phage	Genobase	PMID:3038334
1E12	Kohara Phage	Genobase	PMID:3038334
zcc-282::Tn10	Linked marker	CAG18466 = CGSC7359^[5]	est. P1 cotransduction: 57% ^[6]
zce-726::Tn10	Linked marker	CAG12078 = CGSC7361^[5]	est. P1 cotransduction: 1% ^[6]
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10802	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10802	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000793	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:945602	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0795	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003433	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	PutP
Synonyms	proline:sodium symporter^[1], B1015^[2]^[1], PutC^[2]^[1], PutP^[2]^[1] , ECK1006, JW1001, putC, b1015
Product description	PutP proline SSS transporter^[2]^[3] Proline/Na+, Li+ symport protein; also transports propionate (Reed, 2006)^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005298	proline:sodium symporter activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011851	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006811	ion transport	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0406	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006814	sodium ion transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011851	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006814	sodium ion transport	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0739	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015293	symporter activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0769	F	Seeded from EcoCyc (v14.0)	complete
	GO:0015824	proline transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011851	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001734	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018212	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011851	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0812	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9909	C	Seeded from EcoCyc (v14.0)	complete
	GO:0031402	sodium ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011851	F	Seeded from EcoCyc (v14.0)	complete
	GO:0031402	sodium ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0915	F	Seeded from EcoCyc (v14.0)	complete
	GO:0055085	transmembrane transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001734	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source
plasma membrane	C-terminus localized in the cytoplasm with 12 predicted transmembrane domains	Daley et al. (2005) ^[7]
plasma membrane			From EcoCyc^[3]
Inner Membrane		PMID:16079137, PMID:3302614	EchoLocation:putP
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MAISTPMLVT FCVYIFGMIL IGFIAWRSTK NFDDYILGGR SLGPFVTALS AGASDMSGWL LMGLPGAVFL SGISESWIAI GLTLGAWINW KLVAGRLRVH TEYNNNALTL PDYFTGRFED KSRILRIISA LVILLFFTIY CASGIVAGAR LFESTFGMSY ETALWAGAAA TILYTFIGGF LAVSWTDTVQ ASLMIFALIL TPVIVIISVG GFGDSLEVIK QKSIENVDML KGLNFVAIIS LMGWGLGYFG QPHILARFMA ADSHHSIVHA RRISMTWMIL CLAGAVAVGF FGIAYFNDHP ALAGAVNQNA ERVFIELAQI LFNPWIAGIL LSAILAAVMS TLSCQLLVCS SAITEDLYKA FLRKHASQKE LVWVGRVMVL VVALVAIALA ANPENRVLGL VSYAWAGFGA AFGPVVLFSV MWSRMTRNGA LAGMIIGALT VIVWKQFGWL GLYEIIPGFI FGSIGIVVFS LLGKAPSAAM QKRFAEADAH YHSAPPSRLQ ES
Length	502
Mol. Wt	54.346 kDa
pI	8.7 (calculated)
Extinction coefficient	101,870 - 102,495 (calc based on 13 Y, 15 W, and 5 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	35..437	PF00474 Sodium:solute symporter family		PMID:19920124
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<motif_map/>

Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=putP taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128981	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:945602	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003433	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P07117	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10802	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10802	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:945602	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000793	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0795	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	Ecoli K-12	32.437+/-0.178	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.025530504	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	1637	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	361	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	479	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
putP
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1078508..1078548 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b1015 (EcoliWiki Page)	NCBI GEO profiles for putP
microarray	GenExpDB:b1015 (EcoliWiki Page)	Summary of data for putP from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to putP Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10802	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0795	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b1015
EcoGene	EcoGene:EG10802	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000793	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003433	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000011580 (score: 1.000; bootstrap: 69%) ENSANGP00000011955 (score: 0.570) ENSANGP00000023805 (score: 0.356) ENSANGP00000010569 (score: 0.321) ENSANGP00000002287 (score: 0.304) ENSANGP00000019520 (score: 0.282) ENSANGP00000012870 (score: 0.266) ENSANGP00000019502 (score: 0.257) ENSANGP00000022454 (score: 0.166)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000010240 (score: 1.000; bootstrap: 61%) ENSAPMP00000007743 (score: 0.441) ENSAPMP00000003219 (score: 0.295) ENSAPMP00000007399 (score: 0.274) ENSAPMP00000016151 (score: 0.167) ENSAPMP00000032180 (score: 0.100)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00028503 (score: 1.000; bootstrap: 56%) WBGene00025216 (score: 0.060)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00014092 (score: 1.000; bootstrap: 57%) WBGene00018716 (score: 0.056)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000003522 (score: 1.000; bootstrap: 78%) ENSCINP00000014733 (score: 0.761) ENSCINP00000011213 (score: 0.519) ENSCINP00000013795 (score: 0.434) ENSCINP00000019830 (score: 0.432) ENSCINP00000005833 (score: 0.379) ENSCINP00000015025 (score: 0.278) ENSCINP00000000097 (score: 0.269) ENSCINP00000010815 (score: 0.253)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0037895 (score: 1.000; bootstrap: 75%) FBgn0035293 (score: 1.000; bootstrap: 73%) FBgn0029950 (score: 0.471) FBgn0051090 (score: 0.384) FBgn0031998 (score: 0.315) FBgn0017448 (score: 0.277) FBgn0039872 (score: 0.253) FBgn0039873 (score: 0.247) FBgn0039394 (score: 0.245) FBgn0053124 (score: 0.244) FBgn0052669 (score: 0.219) FBgn0034494 (score: 0.207) FBgn0051668 (score: 0.190) FBgn0051262 (score: 0.176) FBgn0039391 (score: 0.167) FBgn0039393 (score: 0.135) FBgn0038652 (score: 0.116) FBgn0039390 (score: 0.073)	From Inparanoid:20070104
Drosophila pseudoobscura	GA21946-PA (score: 1.000; bootstrap: 65%) GA21442-PA (score: 0.273) GA15290-PA (score: 0.223) GA17054-PA (score: 0.213) GA21420-PA (score: 0.172) GA20543-PA (score: 0.161)	From Inparanoid:20070104
Oryza gramene	Q9FRN4 (score: 1.000; bootstrap: 100%) Q7XBS0 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPAC8693c (score: 1.000; bootstrap: 100%) SPBPB8B62c (score: 0.454) SPBC23G73c (score: 0.352)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000132536 (score: 1.000; bootstrap: 47%) NEWSINFRUP00000139147 (score: 0.363) NEWSINFRUP00000165007 (score: 0.340) NEWSINFRUP00000165433 (score: 0.337) NEWSINFRUP00000143770 (score: 0.303) NEWSINFRUP00000181937 (score: 0.297) NEWSINFRUP00000182500 (score: 0.262)	From Inparanoid:20070104
E. coli O157	PUTP	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF03239 Iron permease FTR1 family
Panther (EcoliWiki Page)	PTHR11819:SF51
Pfam (EcoliWiki Page)	PF00474 Sodium:solute symporter family
EcoCyc	EcoCyc:EG10802	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10802	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000793	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0795	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003433	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

putP:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to putP Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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