pepN:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

pepN

Gene Synonym(s)

ECK0923, b0932, JW0915[1], JW0915

Product Desc.

aminopeptidase N[2][3]

Aminopeptidase N[4]

Product Synonyms(s)

aminopeptidase N[1], B0932[2][1], PepN[2][1], α-aminoacylpeptide hydrolase[2][1] , ECK0923, JW0915, b0932

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pepN[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

pepN

Mnemonic

Peptidase

Synonyms

ECK0923, b0932, JW0915[1], JW0915

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

21.33 minutes 

MG1655: 989845..992457
<gbrowseImage> name=NC_000913:989845..992457 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1007713..1010325
<gbrowseImage> name=NC_012967:1007713..1010325 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 892813..895425
<gbrowseImage> name=NC_012759:892813..895425 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 991044..993656
<gbrowseImage> name=NC_007779:991044..993656 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1043773..1046385
<gbrowseImage> name=NC_010473:1043773..1046385 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

989845

Edman degradation

PMID:2869947


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

pepN(del) (Keio:JW0915)

deletion

deletion

PMID:16738554

Shigen

CGSC8927[5]

pepN::Tn5KAN-2 (FB20254)

Insertion at nt 1130 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20254

does not contain pKD46

pepN748(del)::kan

PMID:16738554

CGSC:102286

pepN

Resistant to

Resistant to toxic valine containing peptides

PMID:355237

table 3

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0915

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCACTCAACAGCCACAAGCCAA

Primer 2:CCAGCCAGTGCTTTAGTTATCTT

11F5

Kohara Phage

Genobase

PMID:3038334

7F5

Kohara Phage

Genobase

PMID:3038334

9E9

Kohara Phage

Genobase

PMID:3038334

zca-1230::Tn10

Linked marker

CAG18478 = CGSC7356[5]

est. P1 cotransduction: 15% [6]
Synonyms:zbj-1230::Tn10

zcb-3059::Tn10

Linked marker

CAG12094 = CGSC7358[5]

est. P1 cotransduction: 65% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10696

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10696

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000688

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947253

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0690

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003171

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PepN

Synonyms

aminopeptidase N[1], B0932[2][1], PepN[2][1], α-aminoacylpeptide hydrolase[2][1] , ECK0923, JW0915, b0932

Product description

aminopeptidase N[2][3]

Aminopeptidase N[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0004177

aminopeptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0031

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006508

proteolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001930

P

Seeded from EcoCyc (v14.0)

complete

GO:0008237

metallopeptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014782

F

Seeded from EcoCyc (v14.0)

complete

GO:0008237

metallopeptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0482

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012779

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014782

F

Seeded from EcoCyc (v14.0)

complete

GO:0004177

aminopeptidase activity

PMID:14663077

IDA: Inferred from Direct Assay

F

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0043171

peptide catabolic process

PMID:355237

IGI: Inferred from Genetic Interaction

EcoliWiki:EcoliWiki:pepA EcoliWiki:pepB EcoliWiki:pepD EcoliWiki:pepQ


P

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

hyfG

PMID:15690043

Experiment(s):EBI-887044

Protein

groL

PMID:15690043

Experiment(s):EBI-887044

Protein

ygjK

PMID:16606699

Experiment(s):EBI-1138417

Protein

rsuA

PMID:16606699

Experiment(s):EBI-1138417

Protein

groL

PMID:19402753

MALDI(Z-score):17.053160

Protein

groS

PMID:19402753

MALDI(Z-score):26.277645

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTQQPQAKYR HDYRAPDYQI TDIDLTFDLD AQKTVVTAVS QAVRHGASDA PLRLNGEDLK
LVSVHINDEP WTAWKEEEGA LVISNLPERF TLKIINEISP AANTALEGLY QSGDALCTQC
EAEGFRHITY YLDRPDVLAR FTTKIIADKI KYPFLLSNGN RVAQGELENG RHWVQWQDPF
PKPCYLFALV AGDFDVLRDT FTTRSGREVA LELYVDRGNL DRAPWAMTSL KNSMKWDEER
FGLEYDLDIY MIVAVDFFNM GAMENKGLNI FNSKYVLART DTATDKDYLD IERVIGHEYF
HNWTGNRVTC RDWFQLSLKE GLTVFRDQEF SSDLGSRAVN RINNVRTMRG LQFAEDASPM
AHPIRPDMVI EMNNFYTLTV YEKGAEVIRM IHTLLGEENF QKGMQLYFER HDGSAATCDD
FVQAMEDASN VDLSHFRRWY SQSGTPIVTV KDDYNPETEQ YTLTISQRTP ATPDQAEKQP
LHIPFAIELY DNEGKVIPLQ KGGHPVNSVL NVTQAEQTFV FDNVYFQPVP ALLCEFSAPV
KLEYKWSDQQ LTFLMRHARN DFSRWDAAQS LLATYIKLNV ARHQQGQPLS LPVHVADAFR
AVLLDEKIDP ALAAEILTLP SVNEMAELFD IIDPIAIAEV REALTRTLAT ELADELLAIY
NANYQSEYRV EHEDIAKRTL RNACLRFLAF GETHLADVLV SKQFHEANNM TDALAALSAA
VAAQLPCRDA LMQEYDDKWH QNGLVMDKWF ILQATSPAAN VLETVRGLLQ HRSFTMSNPN
RIRSLIGAFA GSNPAAFHAE DGSGYLFLVE MLTDLNSRNP QVASRLIEPL IRLKRYDAKR
QEKMRAALEQ LKGLENLSGD LYEKITKALA
Length

870

Mol. Wt

98.92 kDa

pI

5.1 (calculated)

Extinction coefficient

117,690 - 118,690 (calc based on 31 Y, 13 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P04825

Domain

15..384

PF01433 Peptidase family M1

PMID:19920124

Domain

457..870

PF11940 Domain of unknown function (DUF3458)

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=pepN taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128899

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947253

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003171

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P04825

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10696

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10696

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947253

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000688

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0690

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

8.40E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

133.679+/-0.74

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.46555+/-0.05898

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.108346095

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

3051

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1248

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2291

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

pepN

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription of pepN is regulation by phosphate limitation, the nature of the carbon and energy source, and anaerobiosis.[7] Mutations in phoB,phoM, phoR, crp, and fnr did not affect pepN expression. [7]

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:989825..989865 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0932 (EcoliWiki Page)

NCBI GEO profiles for pepN

microarray

GenExpDB:b0932 (EcoliWiki Page)

Summary of data for pepN from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (989499..989850) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ10; Well:G4[8]

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Notes

Accessions Related to pepN Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10696

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0690

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0932

EcoGene

EcoGene:EG10696

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000688

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003171

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021233 (score: 1.000; bootstrap: 87%)
  • ENSANGP00000012865 (score: 0.900)
  • ENSANGP00000021236 (score: 0.639)
  • ENSANGP00000003366 (score: 0.230)
  • ENSANGP00000023545 (score: 0.217)
  • ENSANGP00000007943 (score: 0.204)
  • ENSANGP00000023446 (score: 0.194)
  • ENSANGP00000025222 (score: 0.193)
  • ENSANGP00000017786 (score: 0.193)
  • ENSANGP00000021306 (score: 0.192)
  • ENSANGP00000025553 (score: 0.190)
  • ENSANGP00000022062 (score: 0.190)
  • ENSANGP00000028917 (score: 0.180)
  • ENSANGP00000004057 (score: 0.179)
  • ENSANGP00000020286 (score: 0.179)
  • ENSANGP00000002729 (score: 0.163)
  • ENSANGP00000026472 (score: 0.149)
  • ENSANGP00000014416 (score: 0.117)
  • ENSANGP00000001203 (score: 0.058)
  • ENSANGP00000019570 (score: 0.056)
  • ENSANGP00000019854 (score: 0.055)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000013649 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000030882 (score: 0.257)
  • ENSAPMP00000013702 (score: 0.155)
  • ENSAPMP00000016341 (score: 0.111)
  • ENSAPMP00000021637 (score: 0.089)
  • ENSAPMP00000021184 (score: 0.066)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G63770 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000026511 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000001164 (score: 0.331)
  • ENSBTAP00000018026 (score: 0.321)
  • ENSBTAP00000010972 (score: 0.195)
  • ENSBTAP00000015199 (score: 0.192)
  • ENSBTAP00000022456 (score: 0.189)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028571 (score: 1.000; bootstrap: 100%)
  • WBGene00030119 (score: 0.443)
  • WBGene00031083 (score: 0.052)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000009652 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000015520 (score: 0.257)
  • ENSCAFP00000018660 (score: 0.177)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018878 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2477 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3424 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-269 (score: 0.259)
  • ZDB-GENE-040718-241 (score: 0.259)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191291 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0015541 (score: 1.000; bootstrap: 100%)
  • FBgn0039640 (score: 0.197)
  • FBgn0040282 (score: 0.195)
  • FBgn0051445 (score: 0.189)
  • FBgn0052473 (score: 0.152)
  • FBgn0038136 (score: 0.142)
  • FBgn0038135 (score: 0.142)
  • FBgn0035226 (score: 0.131)
  • FBgn0030223 (score: 0.127)
  • FBgn0051198 (score: 0.121)
  • FBgn0046253 (score: 0.108)
  • FBgn0051343 (score: 0.102)
  • FBgn0030222 (score: 0.100)
  • FBgn0051233 (score: 0.097)
  • FBgn0039656 (score: 0.080)
  • FBgn0039064 (score: 0.068)
  • FBgn0038897 (score: 0.067)
  • FBgn0051177 (score: 0.064)
  • FBgn0036186 (score: 0.064)
  • FBgn0028935 (score: 0.061)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018616 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000000506 (score: 0.201)
  • ENSGALP00000013530 (score: 0.196)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000228740 (score: 1.000; bootstrap: 100%)
  • ENSP00000295640 (score: 0.254)
  • ENSP00000270357 (score: 0.140)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009957 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000000631 (score: 0.277)
  • ENSMODP00000003345 (score: 0.149)

From Inparanoid:20070104

Mus musculus

  • MGI:96836 (score: 1.000; bootstrap: 100%)
  • MGI:2384902 (score: 0.257)
  • MGI:1914170 (score: 0.144)

From Inparanoid:20070104

Oryza gramene

  • Q6ZBX8 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000009041 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000003083 (score: 0.210)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005930 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000009198 (score: 0.252)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL045W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC13225c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000164776 (score: 1.000; bootstrap: 68%)
  • NEWSINFRUP00000180368 (score: 0.335)
  • NEWSINFRUP00000177865 (score: 0.283)
  • NEWSINFRUP00000182756 (score: 0.196)
  • NEWSINFRUP00000157582 (score: 0.167)
  • NEWSINFRUP00000148362 (score: 0.149)
  • NEWSINFRUP00000159528 (score: 0.143)
  • NEWSINFRUP00000171131 (score: 0.128)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00005050001 (score: 1.000; bootstrap: 100%)
  • GSTENP00021140001 (score: 0.137)
  • GSTENP00001493001 (score: 0.081)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000051247 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

PEPN

From SHIGELLACYC

E. coli O157

PEPN

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01433 Peptidase family M1

Panther (EcoliWiki Page)

PTHR11533:SF8

Superfamily (EcoliWiki Page)

SUPERFAMILY:55486

Superfamily (EcoliWiki Page)

SUPERFAMILY:63737

Pfam (EcoliWiki Page)

PF11940 Domain of unknown function (DUF3458)

EcoCyc

EcoCyc:EG10696

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10696

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000688

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0690

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003171

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ 7.0 7.1 Gharbi, S et al. (1985) Multiple controls exerted on in vivo expression of the pepN gene in Escherichia coli: studies with pepN-lacZ operon and protein fusion strains. J. Bacteriol. 163 1191-5 PubMed
  8. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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