pdxH:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

pdxH

Gene Synonym(s)

ECK1634, b1638, JW1630[1], JW1630

Product Desc.

PdxH[2][3];

Component of PDXH-CPLX[2]

Pyridoxine/pyridoxamine phosphate (PNP/PMP) oxidase; isoniazid resistance[4]

Product Synonyms(s)

pyridoxine 5'-phosphate oxidase[1], B1638[2][1], PdxH[2][1] , ECK1634, JW1630, b1638

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pdxH-tyrS-pdxY[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

pdxH

Mnemonic

Pyridoxine

Synonyms

ECK1634, b1638, JW1630[1], JW1630

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

36.97 minutes 

MG1655: 1716031..1715375
<gbrowseImage> name=NC_000913:1715375..1716031 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1695201..1694545
<gbrowseImage> name=NC_012967:1694545..1695201 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1607434..1608090
<gbrowseImage> name=NC_012759:1607434..1608090 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1719721..1719065
<gbrowseImage> name=NC_007779:1719065..1719721 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1806602..1805946
<gbrowseImage> name=NC_010473:1805946..1806602 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1715378

Edman degradation

PMID:7860596


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔpdxH (Keio:JW1630)

deletion

deletion

PMID:16738554

Shigen
CGSC9388[5]

pdxH::Tn5KAN-2 (FB20401)

Insertion at nt 417 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20401

does not contain pKD46

pdxH::Tn5KAN-2 (FB20402)

Insertion at nt 417 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20402

contains pKD46

pdxHR14M

R14M

Reduces affinity for substrate about 9-fold, but has no effect on catalytic activity

seeded from UniProt:P0AFI7

pdxHY17F

Y17F

Reduces affinity for substrate 3- fold, but has about 5-fold increase in catalytic activity

seeded from UniProt:P0AFI7

pdxHD49A

D49A

Reduces affinity for substrate 3- fold and catalytic activity 2-fold

seeded from UniProt:P0AFI7

pdxHR14E

R14E

Reduces affinity for substrate about 7-fold, but has no effect on catalytic activity

seeded from UniProt:P0AFI7

pdxHR197E

R197E

Reduces affinity for substrate 8000-fold and catalytic activity 16-fold

seeded from UniProt:P0AFI7

pdxHR197M

R197M

Reduces affinity for substrate 300- fold and catalytic activity about 4-fold

seeded from UniProt:P0AFI7

pdxHH199A

H199A

Reduces affinity for substrate 230- fold, but has no effect on catalytic activity

seeded from UniProt:P0AFI7

pdxHH199N

H199N

Reduces catalytic activity about 4- fold, but has no effect on affinity for substrate

seeded from UniProt:P0AFI7

pdxH15(Am)

CGSC:11579

amber (UAG) mutation

ΔpdxH787::kan

PMID:16738554

CGSC:102270

ΔpdxH::ΩCmR

Middle third of of the pdxH coding region was deleted and replaced by an ΩCmR cassette.[6]

Auxotrophies

Deletion inactivates the PYRIDOXINE 5'-PHOSPHATE OXIDASE or PMP PYRIDOXAMINE 5'-PHOSPHATE OXIDASE activities and prevents synthesis of pyridoxal phosphate. See Materials and Methods.

PMID:7860596

Strain: TX2768

pdxH::MudI-8

Exact insertion within pdxH is unknown, Figure 2.

Exact insertion within pdxH is unknown, Figure 2.

Auxotrophies

pdxH::MudI-8 mutants show a requirement for pyridoxal that cannot be satisfied by Pyridoxine (Fig.1). Colonies of pdxH::MudI-8 grew slower than pdxH+ parent (table 2). Growth was also abnormal (fig. 7B) not due to MudI-8 insertion. Results were the same in aerobic and anaerobic conditions (Table 2).

PMID:1356963

strain: NU1708, NU1709


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1630

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCTCTGATAACGACGAATTGCA

Primer 2:CCGGGTGCAAGACGATCAATCTT

20B5

Kohara Phage

Genobase

PMID:3038334

zdd-235::Tn10

Linked marker

CAG18461 = CGSC7378[5]

est. P1 cotransduction: % [7]
Synonyms:zdc-235::Tn10

zdi-925::Tn10

Linked marker

CAG12151 = CGSC7385[5]

est. P1 cotransduction: 4% [7]
Synonyms:zdh-925::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11487

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11487

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001443

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946806

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1450

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005482

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PdxH

Synonyms

pyridoxine 5'-phosphate oxidase[1], B1638[2][1], PdxH[2][1] , ECK1634, JW1630, b1638

Product description

PdxH[2][3];

Component of PDXH-CPLX[2]

Pyridoxine/pyridoxamine phosphate (PNP/PMP) oxidase; isoniazid resistance[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0004733

pyridoxamine-phosphate oxidase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01629

F

Seeded from EcoCyc (v14.0)

complete

GO:0004733

pyridoxamine-phosphate oxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000659

F

Seeded from EcoCyc (v14.0)

complete

GO:0004733

pyridoxamine-phosphate oxidase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.4.3.5

F

Seeded from EcoCyc (v14.0)

complete

GO:0008615

pyridoxine biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000659

P

Seeded from EcoCyc (v14.0)

complete

GO:0008615

pyridoxine biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0664

P

Seeded from EcoCyc (v14.0)

complete

GO:0010181

FMN binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01629

F

Seeded from EcoCyc (v14.0)

complete

GO:0010181

FMN binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011576

F

Seeded from EcoCyc (v14.0)

complete

GO:0010181

FMN binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012349

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0016638

oxidoreductase activity, acting on the CH-NH2 group of donors

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019576

F

Seeded from EcoCyc (v14.0)

complete

GO:0016638

oxidoreductase activity, acting on the CH-NH2 group of donors

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019740

F

Seeded from EcoCyc (v14.0)

complete

GO:0042816

vitamin B6 metabolic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01629

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000659

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019576

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019740

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

GO:0004733

pyridoxamine-phosphate oxidase activity

PMID:7860596

IDA: Inferred from Direct Assay

F

Figure 3

complete

GO:0016491

oxidoreductase activity

PMID:7860596

IDA: Inferred from Direct Assay

F

Tables 3 and 4.

complete

GO:0055114

oxidation-reduction process

PMID:7860596

IDA: Inferred from Direct Assay

P

table 3 and 4.

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of PDXH-CPLX

could be indirect

Protein

ymfG

PMID:16606699

Experiment(s):EBI-1140341

Protein

rplS

PMID:16606699

Experiment(s):EBI-1140341

Protein

rpsM

PMID:16606699

Experiment(s):EBI-1140341

Protein

gst

PMID:16606699

Experiment(s):EBI-1140341

Protein

tap

PMID:16606699

Experiment(s):EBI-1140341

Protein

cybC

PMID:16606699

Experiment(s):EBI-1140341

Protein

yghW

PMID:16606699

Experiment(s):EBI-1140341

Protein

ybaK

PMID:16606699

Experiment(s):EBI-1140341
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSDNDELQQI AHLRREYTKG GLRRRDLPAD PLTLFERWLS QACEAKLADP TAMVVATVDE
HGQPYQRIVL LKHYDEKGMV FYTNLGSRKA HQIENNPRVS LLFPWHTLER QVMVIGKAER
LSTLEVMKYF HSRPRDSQIG AWVSKQSSRI SARGILESKF LELKQKFQQG EVPLPSFWGG
FRVSLEQIEF WQGGEHRLHD RFLYQRENDA WKIDRLAP
Length

218

Mol. Wt

25.545 kDa

pI

9.6 (calculated)

Extinction coefficient

41,940 - 42,065 (calc based on 6 Y, 6 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0AFI7

Domain

39..125

PF01243 Pyridoxamine 5'-phosphate oxidase

PMID:19920124

Domain

178..218

PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=pdxH taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129596

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946806

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005482

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AFI7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11487

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11487

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946806

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001443

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1450

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

3.15E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

25.51+/-0.319

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.067073171

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

1180

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

672

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

609

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

pdxH-tyrS-pdxY

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1716011..1716051 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1638 (EcoliWiki Page)

NCBI GEO profiles for pdxH

microarray

GenExpDB:b1638 (EcoliWiki Page)

Summary of data for pdxH from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (1715931..1716161) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ17; Well:E4[8]

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Notes

Accessions Related to pdxH Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11487

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1450

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1638

EcoGene

EcoGene:EG11487

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001443

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005482

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000013516 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000015107 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G49970 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000016263 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036408 (score: 1.000; bootstrap: 100%)
  • WBGene00034823 (score: 0.646)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00018996 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024729 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011900 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231657 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0051472 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16274-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000225573 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000004433 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000015581 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:2144151 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q8S7J1 (score: 1.000; bootstrap: 100%)
  • Q7XF83 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000015884 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR035C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC10932 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000171087 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019155001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000050656 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Shigella flexneri

PDXH

From SHIGELLACYC

E. coli O157

PDXH

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:50475

Panther (EcoliWiki Page)

PTHR10851:SF0

Pfam (EcoliWiki Page)

PF01243 Pyridoxamine 5'-phosphate oxidase

Pfam (EcoliWiki Page)

PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

EcoCyc

EcoCyc:EG11487

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11487

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001443

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1450

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005482

Escherichia coli str. K-12 substr. MG1655

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ Man, TK et al. (1996) Isolation of a pdxJ point mutation that bypasses the requirement for the PdxH oxidase in pyridoxal 5' -phosphate coenzyme biosynthesis in Escherichia coli K-12. J. Bacteriol. 178 2445-9 PubMed
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  8. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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