ompR:On One Page

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

<protect>

Standard Name

ompR

Gene Synonym(s)

ECK3392, b3405, JW3368, cry, ompB, kmt[1], kmt

Product Desc.

OmpR[2][3];

Component of OmpR transcriptional dual regulator[2][3]

Response regulator for osmoregulation; regulates production of outer membrane proteins[4]

Product Synonyms(s)

DNA-binding response regulator in two-component regulatory system with EnvZ[1], B3405[2][1], Cry[2][1], OmpB[2][1], OmpR[2][1], response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis[2][1], transcriptional regulatory protein OmpR[2][1], unphosphorylated transcriptional regulatory protein OmpR[2][1], unmodified transcriptional regulatory protein OmpR[2][1], Kmt[2][1] , ECK3392, JW3368, kmt, ompB, b3405

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ompR-envZ[2], OP00246, ompB

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

edit table

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

[back to top]


The cognate sensor kinase for OmpR is EnvZ. Binds TrxA (Kumar, 2004). Mutants have elevated OM vesiculation (McBroom, 2006).[4]



Gene

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> <protect>

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ompR

Mnemonic

Outer membrane protein

Synonyms

ECK3392, b3405, JW3368, cry, ompB, kmt[1], kmt

edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

76.17 minutes 

MG1655: 3534606..3533887
<gbrowseImage> name=NC_000913:3533887..3534606 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3465268..3464549
<gbrowseImage> name=NC_012967:3464549..3465268 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3421044..3421763
<gbrowseImage> name=NC_012759:3421044..3421763 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4103832..4104551
<gbrowseImage> name=NC_007779:4103832..4104551 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3632351..3631632
<gbrowseImage> name=NC_010473:3631632..3632351 source=DH10B preset=GeneLocation </gbrowseImage>

edit table

</protect>

Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table

<protect></protect>

Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ompR(del) (Keio:JW3368)

deletion

deletion

PMID:16738554

Shigen
CGSC10510[5]

ompR::Tn5KAN-I-SceI (FB21168)

Insertion at nt 434 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21168

does not contain pKD46

ompR::Tn5KAN-I-SceI (FB21169)

Insertion at nt 434 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21169

contains pKD46

ompR(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

ompR(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938

ompR321(Am, polar)

polar

PMID:3157679

CGSC:10590

amber (UAG) mutation

ompR739(del)::kan

PMID:16738554

CGSC:102184

ompR101

164-182

inframe deletion

Growth Phenotype

produces no protein even though ompR mRNA is present

PMID:1695892

ompR1

deletion

deletion of amino acids 164-182 near the C-terminus

lost proteins

lack both OmpF and OmpC proteins

PMID:3010044

PMID:6799653

ompR3

point mutation at N-terminal

at amino acid 15 (C43 to T)

increased protein expression

OmpC expression is significant even in low-osmolarity medium

PMID:3010044

ompR4

point mutation

C211 is changed to T at amino acid 71

protein expression

Expression of OmpC was significant even in low-osmolarity medium

PMID:3010044

ompR20

point mutation at the C-terminal

C448 is changed to T at amino acid 150

protein expression

OmpF expression was significant in high-osmolarity medium

PMID:3010044

ompR2

point mutation at the C-terminal

G607 was changed to A at amino acid 203

protein expression

OmpF expression was significant in high-osmolarity medium

PMID:3010044

PMID:6799653

ompR77

point mutation

Leu-to-Gln at amino acid 16 from the N-terminus of OmpR

protein expression

Suppresses envZ11 pleiotropic defects

PMID:3536870

ompRres

protein expresison

ompF expression increases with increasing osmolarity and ompC expression has no apparent change

PMID:6378888

ompR(del)

deletion

Change in the expression of a gene

Decrease in the expression of rybB gene.

PMID:17416652

See Figure 1 A.

ompR in strain 834

Resistant to

chlormaphenicol resistant

PMID:346560

Strain: 834

ompR in strain 834

Resistant to

copper resistance

PMID:346560

Strain: 834

ompR in strain CS197

Resistant to

Resistant to colicin A

PMID:346560

CS197

Table 2

ompR in strain CS197

Resistant to

Resistant to colicin E2

PMID:346560

CS197

Table 2

ompR in strain CS197

Resistant to

Resistant to colicin E3

PMID:346560

CS197

Table 2

ompR in strain CS197

Resistant to

Resistant to colicin K

PMID:346560

CS197

Table 2

ompR in strain CS197

Resistant to

Resistant to colicin L

PMID:346560

CS197

Table 2

ompR in strain CS197

Resistant to

Resistant to colicin S4

PMID:346560

CS197

Table 2

ompR in strain CS197

Resistant to

partially Resistant to colicin X

PMID:346560

CS197

Table 2

ompR in strain CS197

Resistant to

Resistant to Me1

PMID:346560

CS197

Table 2

ompR in strain CS197

Resistant to

Resistant to hy2

PMID:346560

CS197

Table 2

ompR in strain CS197

Resistant to

Resistant to Tulb

PMID:346560

CS197

Table 2

ompB1422

Resistant to

Resistance to beta lactam Cefoxitin

PMID:6760806

Strains: B1436, B1437 (omp1350), pop1389 (ompB101)

Table 3.

ompB1422

Resistant to

Resistance to Beta Lactam Ampicillin.

PMID:6760806

Strains: B1436, B1437 (omp1350), pop1389 (ompB101)

Table 3.

ompR-

Resistant to

Small increase in Microcin B17 resistance

PMID:3543211

See table 4 for results of level of resistance test.

ompR-'recA -

Resistant to

Double mutation caused partial increase in Microcin B17 resistance

PMID:3543211

See table 4 for results of resistance experiment.

edit table

<protect></protect>

Notes

Genetic Interactions

[back to top]


<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3368

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCAAGAGAACTACAAGATTCT

Primer 2:CCTGCTTTAGAGCCGTCCGGTAC

2F6

Kohara Phage

Genobase

PMID:3038334

1C9

Kohara Phage

Genobase

PMID:3038334

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[5]

est. P1 cotransduction: 30% [6]
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

glgP721::Tn10

Linked marker

CAG18638 = CGSC7451[5]

est. P1 cotransduction: 32% [6]
Synonyms:zhg-3086::Tn10, zhh-21::Tn10

edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10672

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10672

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000665

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947913

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0666

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011110

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Product(s)

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

OmpR

Synonyms

DNA-binding response regulator in two-component regulatory system with EnvZ[1], B3405[2][1], Cry[2][1], OmpB[2][1], OmpR[2][1], response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis[2][1], transcriptional regulatory protein OmpR[2][1], unphosphorylated transcriptional regulatory protein OmpR[2][1], unmodified transcriptional regulatory protein OmpR[2][1], Kmt[2][1] , ECK3392, JW3368, kmt, ompB, b3405

Product description

OmpR[2][3];

Component of OmpR transcriptional dual regulator[2][3]

Response regulator for osmoregulation; regulates production of outer membrane proteins[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0045893

positive regulation of transcription, DNA-dependent

PMID:2558046

IDA: Inferred from Direct Assay

P

ompF promoter- Figure 4

replaces obsolete GO:0016563

complete

GO:0000156

two-component response regulator activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001789

F

Seeded from EcoCyc (v14.0)

complete

GO:0000156

two-component response regulator activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001867

F

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001789

P

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001867

P

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0902

P

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001867

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

PMID:2558046

IDA: Inferred from Direct Assay

P

with CheA- Figure 4

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0000156

two-component response regulator activity

PMID:2558046

IDA: Inferred from Direct Assay

F

Figure 4

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001789

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001867

P

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of OmpR transcriptional dual regulator

could be indirect

Protein

prs

PMID:16606699

Experiment(s):EBI-1145810

Protein

nagZ

PMID:16606699

Experiment(s):EBI-1145810

Protein

cbl

PMID:16606699

Experiment(s):EBI-1145810

Protein

EnvZ

functional interaction between EnvZ and OmpR

PMID:3536870


edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQENYKILVV DDDMRLRALL ERYLTEQGFQ VRSVANAEQM DRLLTRESFH LMVLDLMLPG
EDGLSICRRL RSQSNPMPII MVTAKGEEVD RIVGLEIGAD DYIPKPFNPR ELLARIRAVL
RRQANELPGA PSQEEAVIAF GKFKLNLGTR EMFREDEPMP LTSGEFAVLK ALVSHPREPL
SRDKLMNLAR GREYSAMERS IDVQISRLRR MVEEDPAHPR YIQTVWGLGY VFVPDGSKA
Length

239

Mol. Wt

27.353 kDa

pI

6.2 (calculated)

Extinction coefficient

14,440 - 14,565 (calc based on 6 Y, 1 W, and 1 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

156..232

PF00486 Transcriptional regulatory protein, C terminal

PMID:19920124

Domain

7..117

PF00072 Response regulator receiver domain

PMID:19920124

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ompR taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131282

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947913

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011110

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AA16

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10672

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10672

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947913

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000665

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0666

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




Expression

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

6.13E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

80.769+/-0.719

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.086926287

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

2248

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

865

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1338

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

edit table

Notes

Transcription and Transcriptional Regulation

[back to top]


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

ompR-envZ

edit table
Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Procaine increases levels of OmpR-phosphate in the cell. [7]

Translation and Regulation of Translation

[back to top]


<protect><gbrowseImage> name=NC_000913:3534586..3534626 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3405 (EcoliWiki Page)

NCBI GEO profiles for ompR

microarray

GenExpDB:b3405 (EcoliWiki Page)

Summary of data for ompR from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (3534127..3534451) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:C4[8]

edit table

<protect></protect>

Notes

Accessions Related to ompR Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10672

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0666

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3405

EcoGene

EcoGene:EG10672

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000665

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011110

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Evolution

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT4G31920 (score: 1.000; bootstrap: 100%)
  • AT2G01760 (score: 1.000; bootstrap: 100%)
  • AT2G25180 (score: 0.521)
  • AT3G16857 (score: 0.312)
  • AT4G16110 (score: 0.186)
  • AT5G49240 (score: 0.157)
  • AT1G49190 (score: 0.149)
  • AT3G62670 (score: 0.115)
  • AT4G18020 (score: 0.115)
  • AT5G07210 (score: 0.102)
  • AT2G27070 (score: 0.098)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0183884 (score: 1.000; bootstrap: 71%)
  • DDB0191388 (score: 1.000; bootstrap: 62%)
  • DDB0220512 (score: 0.106)
  • DDB0231984 (score: 0.080)
  • DDB0185194 (score: 0.077)
  • DDB0187191 (score: 0.076)
  • DDB0191306 (score: 0.075)
  • DDB0204819 (score: 0.075)
  • DDB0218392 (score: 0.066)
  • DDB0218263 (score: 0.065)
  • DDB0187593 (score: 0.065)
  • DDB0185325 (score: 0.061)
  • DDB0217795 (score: 0.060)
  • DDB0220485 (score: 0.058)
  • DDB0191407 (score: 0.058)
  • DDB0188118 (score: 0.058)
  • DDB0216671 (score: 0.056)
  • DDB0206390 (score: 0.052)

From Inparanoid:20070104

Oryza gramene

  • Q6H805 (score: 1.000; bootstrap: 63%)
  • Q94LW1 (score: 0.703)
  • Q5SML5 (score: 0.284)
  • Q6K8X6 (score: 0.277)
  • Q67W50 (score: 0.231)
  • Q948L2 (score: 0.203)
  • Q7Y0W5 (score: 0.111)
  • Q7Y0W3 (score: 0.111)
  • Q7Y0W2 (score: 0.111)
  • Q7Y0W4 (score: 0.108)
  • Q6AU68 (score: 0.069)
  • Q8H908 (score: 0.057)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR206W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC8C94 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

OMPR

From SHIGELLACYC

E. coli O157

OMPR

From ECOO157CYC

Staphylococcus aureus

ARLR belongs to OMPR family of response regulators

edit table


Do-It-Yourself Web Tools

<protect></protect>

Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00486 Transcriptional regulatory protein, C terminal

Superfamily (EcoliWiki Page)

SUPERFAMILY:46894

Superfamily (EcoliWiki Page)

SUPERFAMILY:52172

Panther (EcoliWiki Page)

PTHR24423:SF21

Pfam (EcoliWiki Page)

PF00072 Response regulator receiver domain

EcoCyc

EcoCyc:EG10672

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10672

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000665

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0666

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011110

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Delihas, N & Forst, S (2001) MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors. J. Mol. Biol. 313 1-12 PubMed
  8. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ompR:On_One_Page&oldid=221791"