nusA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

nusA

Gene Synonym(s)

ECK3158, b3169, JW3138[1], JW3138

Product Desc.

transcription termination/antitermination L factor[2][3]

Transcription termination/antitermination L factor; mutant survives lambda induction[4]

Product Synonyms(s)

transcription termination/antitermination L factor[1], B3169[2][1], NusA[2][1] , ECK3158, JW3138, b3169

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp[2], metY-yhbC-nusA-infB[2], yhbC-nusA-infB[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

nusA

Mnemonic

N (phage lambda protein) utilization substance

Synonyms

ECK3158, b3169, JW3138[1], JW3138

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

71.43 minutes 

MG1655: 3315548..3314061
<gbrowseImage> name=NC_000913:3314061..3315548 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3252760..3251273
<gbrowseImage> name=NC_012967:3251273..3252760 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3201209..3202696
<gbrowseImage> name=NC_012759:3201209..3202696 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3317381..3315894
<gbrowseImage> name=NC_007779:3315894..3317381 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3413293..3411806
<gbrowseImage> name=NC_010473:3411806..3413293 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3314061

Edman degradation

PMID:1847365
PMID:6364142
PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

nusA::Tn5KAN-I-SceI (FB21054)

Insertion at nt 1250 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21054

contains pKD46

nusAG181D

G181D

In nusa11; inability to terminate transcription normally at termination sites

seeded from UniProt:P0AFF6

nusAL183R

L183R

In nusA1; restricts lambda growth by preventing antitermination activity of lambda N protein

seeded from UniProt:P0AFF6

nusAE212K

E212K

In nusA10-1

seeded from UniProt:P0AFF6

nusAR104H

R104H

In nusA10-1

seeded from UniProt:P0AFF6

nusA1

CGSC:6506

NusA(del)

deletion

Sensitivity to

increases sensitivity to bicyclomycin

PMID:21183718

See figure 2A

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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3138

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAACAAAGAAATTTTGGCTGT

Primer 2:CCgGCTTCGTCACCGAACCAGCA

E4G11S

Kohara Phage

Genobase

PMID:3038334

18H7

Kohara Phage

Genobase

PMID:3038334

aer-3075::Tn10

Linked marker

CAG12152 = CGSC7438[5]

est. P1 cotransduction: % [6]
Synonyms:zgh-3075::Tn10, zgj-3075::Tn10

sfsB203::Tn10

Linked marker

CAG12072 = CGSC7440[5]

est. P1 cotransduction: 54% [6]
Synonyms:zgj-203::Tn10, zha-203::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10665

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10665

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000658

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947682

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0659

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010413

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

NusA

Synonyms

transcription termination/antitermination L factor[1], B3169[2][1], NusA[2][1] , ECK3158, JW3138, b3169

Product description

transcription termination/antitermination L factor[2][3]

Transcription termination/antitermination L factor; mutant survives lambda induction[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010995

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013735

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003029

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004087

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004088

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009019

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010213

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010995

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013735

F

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003583

P

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006353

transcription termination

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0806

P

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc (v14.0)

complete

GO:0030528

transcription regulator activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010213

F

Seeded from EcoCyc (v14.0)

complete

GO:0030528

transcription regulator activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010214

F

Seeded from EcoCyc (v14.0)

complete

GO:0031554

regulation of transcription termination

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013735

P

Seeded from EcoCyc (v14.0)

complete

GO:0031564

transcription antitermination

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0889

P

Seeded from EcoCyc (v14.0)

complete

GO:0031564

transcription antitermination

PMID:16631197

IMP: Inferred from Mutant Phenotype

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

prsA

PMID:15690043

Experiment(s):EBI-886823

Protein

rpsD

PMID:15690043

Experiment(s):EBI-886823

Protein

rpsG

PMID:15690043

Experiment(s):EBI-886823

Protein

tufA

PMID:15690043

Experiment(s):EBI-886823

Protein

infB

PMID:15690043

Experiment(s):EBI-886823, EBI-893117

Protein

rplA

PMID:15690043

Experiment(s):EBI-886823

Protein

rplB

PMID:15690043

Experiment(s):EBI-886823

Protein

rplC

PMID:15690043

Experiment(s):EBI-886823

Protein

rplD

PMID:15690043

Experiment(s):EBI-886823

Protein

rplO

PMID:15690043

Experiment(s):EBI-886823

Protein

rplV

PMID:15690043

Experiment(s):EBI-886823, EBI-893117

Protein

rpoA

PMID:15690043

Experiment(s):EBI-886823, EBI-879354, EBI-883271, EBI-893117

Protein

rpoB

PMID:15690043

Experiment(s):EBI-886823, EBI-879304, EBI-883170, EBI-893117

Protein

rpoC

PMID:15690043

Experiment(s):EBI-886823, EBI-879261, EBI-893117

Protein

rpoH

PMID:15690043

Experiment(s):EBI-886823

Protein

rpsC

PMID:15690043

Experiment(s):EBI-886823

Protein

aceE

PMID:15690043

Experiment(s):EBI-893117

Protein

metJ

PMID:15690043

Experiment(s):EBI-893117

Protein

pstS

PMID:15690043

Experiment(s):EBI-893117

Protein

rplS

PMID:15690043

Experiment(s):EBI-893117

Protein

rplX

PMID:15690043

Experiment(s):EBI-893117

Protein

rpsE

PMID:15690043

Experiment(s):EBI-893117

Protein

uspA

PMID:15690043

Experiment(s):EBI-893117

Protein

uvrA

PMID:15690043

Experiment(s):EBI-893117

Protein

infB

PMID:16606699

Experiment(s):EBI-1145014

Protein

rplS

PMID:16606699

Experiment(s):EBI-1145014

Protein

rpoB

PMID:16606699

Experiment(s):EBI-1145014

Protein

rplE

PMID:16606699

Experiment(s):EBI-1145014

Protein

rpsD

PMID:16606699

Experiment(s):EBI-1145014

Protein

rpsC

PMID:16606699

Experiment(s):EBI-1145014

Protein

rpsE

PMID:16606699

Experiment(s):EBI-1145014

Protein

cybC

PMID:16606699

Experiment(s):EBI-1145014

Protein

fur

PMID:16606699

Experiment(s):EBI-1145014

Protein

rpsG

PMID:16606699

Experiment(s):EBI-1145014

Protein

rpoC

PMID:16606699

Experiment(s):EBI-1145014

Protein

rhsD

PMID:16606699

Experiment(s):EBI-1145014

Protein

rpsI

PMID:16606699

Experiment(s):EBI-1145014

Protein

argG

PMID:16606699

Experiment(s):EBI-1145014

Protein

ycgL

PMID:16606699

Experiment(s):EBI-1145014

Protein

rplP

PMID:16606699

Experiment(s):EBI-1145014

Protein

rplO

PMID:16606699

Experiment(s):EBI-1145014

Protein

rplB

PMID:16606699

Experiment(s):EBI-1145014

Protein

rplF

PMID:16606699

Experiment(s):EBI-1145014

Protein

infB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):32.761336

Protein

rplS

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):7.861719

Protein

uspA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsD

PMID:19402753

MALDI(Z-score):35.151115

Protein

prs

PMID:19402753

MALDI(Z-score):26.958625

Protein

rpsC

PMID:19402753

MALDI(Z-score):28.874868

Protein

uvrA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753

MALDI(Z-score):33.940166

Protein

rpoB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):28.301955

Protein

rpoZ

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):27.410999

Protein

metJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpoC

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):26.157520

Protein

rpoA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):41.607176

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNKEILAVVE AVSNEKALPR EKIFEALESA LATATKKKYE QEIDVRVQID RKSGDFDTFR
RWLVVDEVTQ PTKEITLEAA RYEDESLNLG DYVEDQIESV TFDRITTQTA KQVIVQKVRE
AERAMVVDQF REHEGEIITG VVKKVNRDNI SLDLGNNAEA VILREDMLPR ENFRPGDRVR
GVLYSVRPEA RGAQLFVTRS KPEMLIELFR IEVPEIGEEV IEIKAAARDP GSRAKIAVKT
NDKRIDPVGA CVGMRGARVQ AVSTELGGER IDIVLWDDNP AQFVINAMAP ADVASIVVDE
DKHTMDIAVE AGNLAQAIGR NGQNVRLASQ LSGWELNVMT VDDLQAKHQA EAHAAIDTFT
KYLDIDEDFA TVLVEEGFST LEELAYVPMK ELLEIEGLDE PTVEALRERA KNALATIAQA
QEESLGDNKP ADDLLNLEGV DRDLAFKLAA RGVCTLEDLA EQGIDDLADI EGLTDEKAGA
LIMAARNICW FGDEA
Length

495

Mol. Wt

54.87 kDa

pI

4.4 (calculated)

Extinction coefficient

30,940 - 31,315 (calc based on 6 Y, 4 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

131..198

PF00575 S1 RNA binding domain

PMID:19920124

Domain

4..125

PF08529 NusA N-terminal domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=nusA taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131061

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947682

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010413

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AFF6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10665

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10665

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947682

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000658

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0659

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.51E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

463.217+/-2.269

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.28103+/-0.01564

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.281439139

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

340

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M22

PMID: 9298646

Protein

E. coli K-12 MG1655

10864

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2195

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

6922

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp

metY-yhbC-nusA-infB

yhbC-nusA-infB

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3315528..3315568 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3169 (EcoliWiki Page)

NCBI GEO profiles for nusA

microarray

GenExpDB:b3169 (EcoliWiki Page)

Summary of data for nusA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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<protect></protect>

Notes

Accessions Related to nusA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10665

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0659

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3169

EcoGene

EcoGene:EG10665

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000658

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010413

Escherichia coli str. K-12 substr. MG1655

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<protect></protect>

Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000026908 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000040925 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NUSA

From SHIGELLACYC

E. coli O157

NUSA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:47794

Superfamily (EcoliWiki Page)

SUPERFAMILY:47794

Superfamily (EcoliWiki Page)

SUPERFAMILY:50249

Panther (EcoliWiki Page)

PTHR22648:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:54814

Superfamily (EcoliWiki Page)

SUPERFAMILY:54814

Superfamily (EcoliWiki Page)

SUPERFAMILY:69705

Pfam (EcoliWiki Page)

PF00575 S1 RNA binding domain

Pfam (EcoliWiki Page)

PF08529 NusA N-terminal domain

EcoCyc

EcoCyc:EG10665

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10665

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000658

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0659

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010413

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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