nuoH:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

nuoH

Gene Synonym(s)

ECK2276, b2282, JW2277[1], JW2277

Product Desc.

NuoH[2][3];

Component of NADH dehydrogenase I[2][3]

NADH:ubiquinone oxidoreductase subunit H, complex I; NADH dehydrogenase I[4]

Product Synonyms(s)

NADH:ubiquinone oxidoreductase, membrane subunit H[1], B2282[2][1], NuoH[2][1] , ECK2276, JW2277, b2282

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nuoABCEFGHIJKLMN[2], nuo1-14

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

nuoH

Mnemonic

NADH:ubiquinone oxidoreductase

Synonyms

ECK2276, b2282, JW2277[1], JW2277

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

51.61 minutes 

MG1655: 2395464..2394487
<gbrowseImage> name=NC_000913:2394487..2395464 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2341033..2340056
<gbrowseImage> name=NC_012967:2340056..2341033 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2280292..2281269
<gbrowseImage> name=NC_012759:2280292..2281269 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2402112..2401135
<gbrowseImage> name=NC_007779:2401135..2402112 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2487229..2486252
<gbrowseImage> name=NC_010473:2486252..2487229 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

nuoH(del) (Keio:JW2277)

deletion

deletion

PMID:16738554

Shigen
CGSC9835[5]

nuoH::Tn5KAN-2 (FB20740)

Insertion at nt 323 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20740

does not contain pKD46

nuoH::Tn5KAN-2 (FB20741)

Insertion at nt 323 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20741

contains pKD46

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire Dextrin

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire D-Galactose

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire D-Mannitol

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire b-Methyl-D-glucoside

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire a-D-Glucose

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire a-D-Glucose-1-phosphate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire a-D-Glucose-6-phosphate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire DL-a-Glycerol

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire DL-Lactate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire Glucuronamide

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanyl-glycine

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire Glycyl-L-aspartate

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938

nuoH(del)::kan

deletion

Biolog:respiration

unable to respire Uridine

PMID:16095938

nuoH764(del)::kan

PMID:16738554

CGSC:102150

nuoH764(del)::FRT

deletion

Mutagenesis Rate

Decrease in Stress Induced Mutagenesis (SIM).

PMID:23224554

Parent Strain: SMR4562 Wild Type Strain: SMR13654

The mutation caused a strong reduction in SIM with a decrease of mutant frequency by over 90 % of the wild type. See figure S3 for experimental results.

nuoH764(del)::FRT

deletion

Sensitivity to

SDS-EDTA Sensitivity

PMID:23224554

Parent Strain: SMR4562 Wild Type Strain: SMR13654

The mutation caused an increase in SDS-EDTA Sensitivity. See table S7 and S1 for a summary of experimental results.

SMR4562 yiaG-yfp FRTcatFRT nuoH764(del)::FRTKanFR

deletion

Sigma S activity

Decrease in SigmaS activity.

PMID:23224554

Parental Strain: SMR10582 Experimental Strain: SMR14287

See table S8 for full experimental data.

CAG45114 nuoH764::FRTKanFRT

Insertion

SigmaE activity

Decrease in sigmaE activity

PMID:23224554

Parental Strain: CAG45114 Experimental Strain: SMR15249

See table S11 for full experimental data.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2277

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGTTGGATATCACCGGAACT

Primer 2:CCTTGCGCCTGCCAGAGAATGAC

4C8

Kohara Phage

Genobase

PMID:3038334

E9B9

Kohara Phage

Genobase

PMID:3038334

9C2

Kohara Phage

Genobase

PMID:3038334

zfb-223::Tn10

Linked marker

CAG18484 = CGSC7406[5]

est. P1 cotransduction: 85% [6]
Synonyms:zej-223::Tn10

zfd-1::Tn10

Linked marker

CAG18467 = CGSC7408[5]

est. P1 cotransduction: % [6]
Synonyms:zfb-1::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12088

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12088

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001993

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946761

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2012

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007541

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

NuoH

Synonyms

NADH:ubiquinone oxidoreductase, membrane subunit H[1], B2282[2][1], NuoH[2][1] , ECK2276, JW2277, b2282

Product description

NuoH[2][3];

Component of NADH dehydrogenase I[2][3]

NADH:ubiquinone oxidoreductase subunit H, complex I; NADH dehydrogenase I[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0874

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

PMID:7607227

IDA: Inferred from Direct Assay

C

The NADH dehydrogenase I complex fractionates with cytoplasmic membranes.

complete

GO:0050136

NADH dehydrogenase (quinone) activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.6.99.5

F

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0003954

NADH dehydrogenase activity

PMID:3122832

IDA: Inferred from Direct Assay

F

Purified NADH dehydrogenase I in membrane vesicles can oxidize NADH.

complete

GO:0030964

NADH dehydrogenase complex

PMID:7607227

IDA: Inferred from Direct Assay

C

E. coli NADH dehydrogenase I was purified and the subunits separated by SDS-PAGE. These seven subunits were not recovered from the gel in sufficient amounts to allow Edman degradation. The polypeptides were assigned to their respective genes based on their apparent molecular masses.

complete

GO:0055114

oxidation reduction

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01350

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001694

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018086

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of NADH dehydrogenase I

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized to the periplasm with 8 predicted transmembrane domains

Daley et al. (2005) [7]

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSWISPELIE ILLTILKAVV ILLVVVTCGA FMSFGERRLL GLFQNRYGPN RVGWGGSLQL
VADMIKMFFK EDWIPKFSDR VIFTLAPMIA FTSLLLAFAI VPVSPGWVVA DLNIGILFFL
MMAGLAVYAV LFAGWSSNNK YSLLGAMRAS AQTLSYEVFL GLSLMGVVAQ AGSFNMTDIV
NSQAHVWNVI PQFFGFITFA IAGVAVCHRH PFDQPEAEQE LADGYHIEYS GMKFGLFFVG
EYIGIVTISA LMVTLFFGGW QGPLLPPFIW FALKTAFFMM MFILIRASLP RPRYDQVMSF
GWKICLPLTL INLLVTAAVI LWQAQ
Length

325

Mol. Wt

36.22 kDa

pI

7.2 (calculated)

Extinction coefficient

66,920 - 67,295 (calc based on 8 Y, 10 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

13..321

PF00146 NADH dehydrogenase

PMID:19920124

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<motif_map/>

tmhmm.php?gene=nuoH&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=nuoH taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130217

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946761

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007541

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AFD4

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12088

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12088

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946761

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001993

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2012

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

1631

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

626

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

740

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

nuoABCEFGHIJKLMN

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2395444..2395484 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2282 (EcoliWiki Page)

NCBI GEO profiles for nuoH

microarray

GenExpDB:b2282 (EcoliWiki Page)

Summary of data for nuoH from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to nuoH Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12088

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2012

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2282

EcoGene

EcoGene:EG12088

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001993

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007541

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000021812 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000030893 (score: 0.174)
  • ENSAPMP00000002215 (score: 0.169)
  • ENSAPMP00000011528 (score: 0.129)
  • ENSAPMP00000027769 (score: 0.100)
  • ENSAPMP00000012107 (score: 0.090)
  • ENSAPMP00000024341 (score: 0.085)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G07785 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042953 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010959 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-011205-7 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201595 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000028440 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000354687 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:101787 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q01148 (score: 1.000; bootstrap: 78%)
  • Q8HCR7 (score: 0.900)
  • Q6R977 (score: 0.900)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000049172 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000180333 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00007429001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NUOH

From SHIGELLACYC

E. coli O157

NUOH

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00146 NADH dehydrogenase

EcoCyc

EcoCyc:EG12088

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12088

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001993

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2012

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007541

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

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