infB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

infB

Gene Synonym(s)

ECK3157, b3168, JW3137, ssyG[1], gicD, ssyG

Product Desc.

protein chain initiation factor IF-2[2][3]

Protein chain initiation factor IF2[4]

Product Synonyms(s)

fused protein chain initiation factor 2, IF2: membrane protein[1], conserved protein[1], B3168[2][1], SsyG[2][1], InfB[2][1], IF2[2][1] , ECK3157, gicD, JW3137, ssyG, b3168

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp[2], metY-yhbC-nusA-infB[2], yhbC-nusA-infB[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

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HT_Cmplx30_Mem: ClpB+DnaK+InfB+RpsA.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

infB

Mnemonic

Initiation factor

Synonyms

ECK3157, b3168, JW3137, ssyG[1], gicD, ssyG

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

71.37 minutes 

MG1655: 3314036..3311364
<gbrowseImage> name=NC_000913:3311364..3314036 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3251248..3248576
<gbrowseImage> name=NC_012967:3248576..3251248 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3198512..3201184
<gbrowseImage> name=NC_012759:3198512..3201184 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3315869..3313197
<gbrowseImage> name=NC_007779:3313197..3315869 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3411781..3409109
<gbrowseImage> name=NC_010473:3409109..3411781 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3311364

Edman degradation

PMID:3894004


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

infBG684A

G684A

(in strain: ECOAU9306)

Strain variation; seeded from UniProt:P0A705

infBD409E

D409E

(in strain: IQ489)

Strain variation; seeded from UniProt:P0A705

infBG423GG

G423GG

(in strain: IQ490)

Strain variation; seeded from UniProt:P0A705

infBH432Q

H432Q

(in strain: ECOAU9326)

Strain variation; seeded from UniProt:P0A705

infBQ490G

Q490G

(in strain: ECOAU9302, ECOAU9306, ECOAU9307 and ECOAU9309)

Strain variation; seeded from UniProt:P0A705

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3137

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCACAGATGTAACGATTAAAAC

Primer 2:CCAGCAATGGTACGTTGGATCTC

E4G11S

Kohara Phage

Genobase

PMID:3038334

18H7

Kohara Phage

Genobase

PMID:3038334

aer-3075::Tn10

Linked marker

CAG12152 = CGSC7438[5]

est. P1 cotransduction: % [6]
Synonyms:zgh-3075::Tn10, zgj-3075::Tn10

sfsB203::Tn10

Linked marker

CAG12072 = CGSC7440[5]

est. P1 cotransduction: 48% [6]
Synonyms:zgj-203::Tn10, zha-203::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10505

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10505

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000498

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947684

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0500

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010410

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

InfB

Synonyms

fused protein chain initiation factor 2, IF2: membrane protein[1], conserved protein[1], B3168[2][1], SsyG[2][1], InfB[2][1], IF2[2][1] , ECK3157, gicD, JW3137, ssyG, b3168

Product description

protein chain initiation factor IF-2[2][3]

Protein chain initiation factor IF2[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003743

translation initiation factor activity

PMID:3894004

IDA: Inferred from Direct Assay

F

complete

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009061

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00100

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000178

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006847

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0396

F

Seeded from EcoCyc (v14.0)

complete

GO:0003924

GTPase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00100

F

Seeded from EcoCyc (v14.0)

complete

GO:0003924

GTPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000795

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000178

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000795

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004161

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005225

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0342

F

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000178

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0648

P

Seeded from EcoCyc (v14.0)

complete

GO:0006413

translational initiation

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00100

P

Seeded from EcoCyc (v14.0)

complete

GO:0006413

translational initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000178

P

Seeded from EcoCyc (v14.0)

complete

GO:0006413

translational initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006847

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ribD

PMID:15690043

Experiment(s):EBI-889882

Protein

rplC

PMID:15690043

Experiment(s):EBI-889882, EBI-894820

Protein

rplM

PMID:15690043

Experiment(s):EBI-889882

Protein

metN

PMID:15690043

Experiment(s):EBI-894820

Protein

dnaK

PMID:15690043

Experiment(s):EBI-894820

Protein

grpE

PMID:15690043

Experiment(s):EBI-894820

Protein

phoA

PMID:15690043

Experiment(s):EBI-894820

Protein

rpmG

PMID:15690043

Experiment(s):EBI-894820

Protein

adhP

PMID:16606699

Experiment(s):EBI-1144996

Protein

phoA

PMID:16606699

Experiment(s):EBI-1144996

Protein

ygfZ

PMID:16606699

Experiment(s):EBI-1144996

Protein

rpsE

PMID:16606699

Experiment(s):EBI-1144996

Protein

rhlE

PMID:16606699

Experiment(s):EBI-1144996

Protein

rplJ

PMID:16606699

Experiment(s):EBI-1144996

Protein

arpA

PMID:16606699

Experiment(s):EBI-1144996

Protein

uup

PMID:16606699

Experiment(s):EBI-1144996

Protein

greA

PMID:16606699

Experiment(s):EBI-1144996

Protein

yedJ

PMID:16606699

Experiment(s):EBI-1144996

Protein

ybiB

PMID:16606699

Experiment(s):EBI-1144996

Protein

mhpR

PMID:16606699

Experiment(s):EBI-1144996

Protein

artM

PMID:16606699

Experiment(s):EBI-1144996

Protein

rplF

PMID:16606699

Experiment(s):EBI-1144996

Protein

ebgC

PMID:16606699

Experiment(s):EBI-1144996

Protein

fliJ

PMID:16606699

Experiment(s):EBI-1144996

Protein

tig

PMID:19402753

LCMS(ID Probability):99.6

Protein

grpE

PMID:19402753

LCMS(ID Probability):99.0

Protein

aspS

PMID:19402753

LCMS(ID Probability):99.6

Protein

pykA

PMID:19402753

LCMS(ID Probability):99.6

Protein

phoA

PMID:19402753

LCMS(ID Probability):99.0

Protein

zwf

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MTDVTIKTLA AERQTSVERL VQQFADAGIR KSADDSVSAQ EKQTLIDHLN QKNSGPDKLT
LQRKTRSTLN IPGTGGKSKS VQIEVRKKRT FVKRDPQEAE RLAAEEQAQR EAEEQARREA
EESAKREAQQ KAEREAAEQA KREAAEQAKR EAAEKDKVSN QQDDMTKNAQ AEKARREQEA
AELKRKAEEE ARRKLEEEAR RVAEEARRMA EENKWTDNAE PTEDSSDYHV TTSQHARQAE
DESDREVEGG RGRGRNAKAA RPKKGNKHAE SKADREEARA AVRGGKGGKR KGSSLQQGFQ
KPAQAVNRDV VIGETITVGE LANKMAVKGS QVIKAMMKLG AMATINQVID QETAQLVAEE
MGHKVILRRE NELEEAVMSD RDTGAAAEPR APVVTIMGHV DHGKTSLLDY IRSTKVASGE
AGGITQHIGA YHVETENGMI TFLDTPGHAA FTSMRARGAQ ATDIVVLVVA ADDGVMPQTI
EAIQHAKAAQ VPVVVAVNKI DKPEADPDRV KNELSQYGIL PEEWGGESQF VHVSAKAGTG
IDELLDAILL QAEVLELKAV RKGMASGAVI ESFLDKGRGP VATVLVREGT LHKGDIVLCG
FEYGRVRAMR NELGQEVLEA GPSIPVEILG LSGVPAAGDE VTVVRDEKKA REVALYRQGK
FREVKLARQQ KSKLENMFAN MTEGEVHEVN IVLKADVQGS VEAISDSLLK LSTDEVKVKI
IGSGVGGITE TDATLAAASN AILVGFNVRA DASARKVIEA ESLDLRYYSV IYNLIDEVKA
AMSGMLSPEL KQQIIGLAEV RDVFKSPKFG AIAGCMVTEG VVKRHNPIRV LRDNVVIYEG
ELESLRRFKD DVNEVRNGME CGIGVKNYND VRTGDVIEVF EIIEIQRTIA
Length

890

Mol. Wt

97.348 kDa

pI

6.0 (calculated)

Extinction coefficient

27,390 - 27,765 (calc based on 11 Y, 2 W, and 3 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

389..554

PF00009 Elongation factor Tu GTP binding domain

PMID:19920124

Domain

579..642

PF03144 Elongation factor Tu domain 2

PMID:19920124

Domain

810..878

PF03144 Elongation factor Tu domain 2

PMID:19920124

Domain

1..52

PF04760 Translation initiation factor IF-2, N-terminal region

PMID:19920124

Domain

313..364

PF04760 Translation initiation factor IF-2, N-terminal region

PMID:19920124

Domain

55..95

PF08364 Bacterial translation initiation factor IF-2 associated region

PMID:19920124

Domain

672..780

PF11987 Translation-initiation factor 2

PMID:19920124

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=infB taxon=562,83333 </beststructure>

Models

View models at:

</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131060

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947684

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010410

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A705

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10505

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10505

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947684

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000498

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0500

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.50E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

13806

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2855

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

9701

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp

metY-yhbC-nusA-infB

yhbC-nusA-infB

Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3314016..3314056 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3168 (EcoliWiki Page)

NCBI GEO profiles for infB

microarray

GenExpDB:b3168 (EcoliWiki Page)

Summary of data for infB from multiple microarray studies


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

<protect></protect>

Notes

Accessions Related to infB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10505

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0500

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3168

EcoGene

EcoGene:EG10505

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000498

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010410

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000023640 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000003160 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G17220 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020573 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038608 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009771 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000004181 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000000257 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0202481 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039588 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10589-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000013160 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000263629 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024930 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000002239 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Mus musculus

  • MGI:1924034 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q69IM0 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020490 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005834 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOL023W (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC12715c (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000138588 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00012283001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000008302 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Shigella flexneri

INFB

From SHIGELLACYC

E. coli O157

INFB

From ECOO157CYC


Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF04760 Translation initiation factor IF-2, N-terminal region

Pfam (EcoliWiki Page)

PF04760 Translation initiation factor IF-2, N-terminal region

Pfam (EcoliWiki Page)

PF03144 Elongation factor Tu domain 2

Pfam (EcoliWiki Page)

PF03144 Elongation factor Tu domain 2

Pfam (EcoliWiki Page)

PF00009 Elongation factor Tu GTP binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:46955

Superfamily (EcoliWiki Page)

SUPERFAMILY:50447

Superfamily (EcoliWiki Page)

SUPERFAMILY:50447

Superfamily (EcoliWiki Page)

SUPERFAMILY:52156

Panther (EcoliWiki Page)

PTHR23115:SF41

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Pfam (EcoliWiki Page)

PF08364 Bacterial translation initiation factor IF-2 associated region

Pfam (EcoliWiki Page)

PF11987 Translation-initiation factor 2

EcoCyc

EcoCyc:EG10505

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10505

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000498

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0500

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010410

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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