hisJ:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

hisJ

Gene Synonym(s)

ECK2303, b2309, JW2306[1], JW2306

Product Desc.

HisJ[2][3];

Component of histidine ABC transporter[2][3]

Histidine-binding protein of high-affinity histidine transport system[4]

Product Synonyms(s)

histidine/lysine/arginine/ornithine transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B2309[2][1], HisJ[2][1] , ECK2303, JW2306, b2309

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): argT-hisJQMP[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Overexpression causes abnormal biofilm architecture.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

hisJ

Mnemonic

Histidine

Synonyms

ECK2303, b2309, JW2306[1], JW2306

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

52.25 minutes 

MG1655: 2424810..2424028
<gbrowseImage> name=NC_000913:2424028..2424810 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2370380..2369598
<gbrowseImage> name=NC_012967:2369598..2370380 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2309833..2310615
<gbrowseImage> name=NC_012759:2309833..2310615 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2432234..2431452
<gbrowseImage> name=NC_007779:2431452..2432234 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2516575..2515793
<gbrowseImage> name=NC_010473:2515793..2516575 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2424031

Edman degradation

PMID:9298646
PMID:9600841
PMID:9740056


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔhisJ (Keio:JW2306)

deletion

deletion

PMID:16738554

Shigen
CGSC9852[5]

hisJ::Tn5KAN-2 (FB20755)

Insertion at nt 456 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20755

contains pKD46

hisJ::Tn5KAN-2 (FB20756)

Insertion at nt 456 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20756

does not contain pKD46

ΔhisJ730::kan

deletion

deletion

PMID:16738554

CGSC:101376


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2306

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAAAAACTGGTGCTATCGCT

Primer 2:CCGCCACCATAAACATCAAAATC

9D2

Kohara Phage

Genobase

PMID:3038334

zfb-223::Tn10

Linked marker

CAG18484 = CGSC7406[5]

est. P1 cotransduction: 25% [6]
Synonyms:zej-223::Tn10

zfd-1::Tn10

Linked marker

CAG18467 = CGSC7408[5]

est. P1 cotransduction: 2% [6]
Synonyms:zfb-1::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12124

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12124

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002027

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945309

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2045

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007617

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

HisJ

Synonyms

histidine/lysine/arginine/ornithine transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B2309[2][1], HisJ[2][1] , ECK2303, JW2306, b2309

Product description

HisJ[2][3];

Component of histidine ABC transporter[2][3]

Histidine-binding protein of high-affinity histidine transport system[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

F

Seeded from EcoCyc (v14.0)

complete

GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005768

F

Seeded from EcoCyc (v14.0)

complete

GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018313

F

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005768

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018313

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0006865

amino acid transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0029

P

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

C

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005768

C

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018313

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of histidine ABC transporter

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

periplasm

From EcoCyc[3]

Periplasm

PMID:9298646

EchoLocation:hisJ


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKKLVLSLSL VLAFSSATAA FAAIPQNIRI GTDPTYAPFE SKNSQGELVG FDIDLAKELC
KRINTQCTFV ENPLDALIPS LKAKKIDAIM SSLSITEKRQ QEIAFTDKLY AADSRLVVAK
NSDIQPTVES LKGKRVGVLQ GTTQETFGNE HWAPKGIEIV SYQGQDNIYS DLTAGRIDAA
FQDEVAASEG FLKQPVGKDY KFGGPSVKDE KLFGVGTGMG LRKEDNELRE ALNKAFAEMR
ADGTYEKLAK KYFDFDVYGG
Length

260

Mol. Wt

28.484 kDa

pI

5.3 (calculated)

Extinction coefficient

17,420 - 17,670 (calc based on 8 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-22

UniProt Manual:Signal Peptides

UniProt:P0AEU0

Modification Site

217

phosphorylation site at T217

probability greater than 75%

PMID:17938405

Domain

28..255

PF00497 Bacterial extracellular solute-binding proteins, family 3

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=hisJ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130244

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945309

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007617

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AEU0

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12124

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12124

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945309

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002027

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2045

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.04E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

2.428+/-0.065

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.061381074

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

3400

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M52-l

PMID: 9298646

Protein

E. coli K-12 MG1655

1763

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

5085

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

808

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

argT-hisJQMP

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2424790..2424830 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2309 (EcoliWiki Page)

NCBI GEO profiles for hisJ

microarray

GenExpDB:b2309 (EcoliWiki Page)

Summary of data for hisJ from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2424724..2425101) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ14; Well:H11[7]

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Notes

Accessions Related to hisJ Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12124

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2045

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2309

EcoGene

EcoGene:EG12124

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002027

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007617

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT2G17260 (score: 1.000; bootstrap: 100%)
  • AT1G42540 (score: 1.000; bootstrap: 100%)
  • AT4G35290 (score: 0.740)
  • AT3G51480 (score: 0.529)
  • AT1G05200 (score: 0.488)
  • AT2G32390 (score: 0.447)
  • AT2G32400 (score: 0.388)
  • AT2G29120 (score: 0.248)
  • AT2G29110 (score: 0.239)
  • AT2G24720 (score: 0.237)
  • AT2G29100 (score: 0.233)
  • AT2G24710 (score: 0.227)
  • AT5G11210 (score: 0.213)
  • AT5G27100 (score: 0.202)
  • AT4G31710 (score: 0.192)
  • AT5G11180 (score: 0.177)
  • AT3G07520 (score: 0.163)
  • AT5G48400 (score: 0.143)
  • AT5G48410 (score: 0.135)
  • AT3G04110 (score: 0.115)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022788 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000024560 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000012214 (score: 0.428)
  • ENSBTAP00000026817 (score: 0.426)
  • ENSBTAP00000015567 (score: 0.402)
  • ENSBTAP00000032956 (score: 0.318)
  • ENSBTAP00000015717 (score: 0.218)
  • ENSBTAP00000006271 (score: 0.212)
  • ENSBTAP00000018244 (score: 0.177)
  • ENSBTAP00000000263 (score: 0.142)
  • ENSBTAP00000010376 (score: 0.126)
  • ENSBTAP00000015137 (score: 0.116)
  • ENSBTAP00000031756 (score: 0.113)
  • ENSBTAP00000035962 (score: 0.113)
  • ENSBTAP00000026819 (score: 0.111)
  • ENSBTAP00000035007 (score: 0.107)
  • ENSBTAP00000006272 (score: 0.050)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001615 (score: 1.000; bootstrap: 77%)
  • WBGene00001614 (score: 0.223)
  • WBGene00001612 (score: 0.133)
  • WBGene00001613 (score: 0.130)
  • WBGene00001616 (score: 0.122)
  • WBGene00001617 (score: 0.115)
  • WBGene00001618 (score: 0.100)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026248 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000023480 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000012708 (score: 0.661)
  • ENSCAFP00000021888 (score: 0.660)
  • ENSCAFP00000027399 (score: 0.652)
  • ENSCAFP00000014728 (score: 0.530)
  • ENSCAFP00000005336 (score: 0.285)
  • ENSCAFP00000012922 (score: 0.270)
  • ENSCAFP00000004975 (score: 0.269)
  • ENSCAFP00000017493 (score: 0.230)
  • ENSCAFP00000007350 (score: 0.138)
  • ENSCAFP00000028837 (score: 0.075)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030616-53 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040724-186 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-020125-5 (score: 0.896)
  • ZDB-GENE-030131-8013 (score: 0.705)
  • ZDB-GENE-020125-3 (score: 0.697)
  • ZDB-GENE-020125-4 (score: 0.673)
  • ZDB-GENE-040913-1 (score: 0.143)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0020429 (score: 1.000; bootstrap: 100%)
  • FBgn0038840 (score: 1.000; bootstrap: 100%)
  • FBgn0028422 (score: 1.000; bootstrap: 100%)
  • FBgn0051201 (score: 0.561)
  • FBgn0004620 (score: 0.386)
  • FBgn0038837 (score: 0.364)
  • FBgn0031293 (score: 0.319)
  • FBgn0039927 (score: 0.282)
  • FBgn0026255 (score: 0.233)
  • FBgn0028431 (score: 0.215)
  • FBgn0039916 (score: 0.189)
  • FBgn0004619 (score: 0.176)
  • FBgn0031634 (score: 0.079)
  • FBgn0010399 (score: 0.071)
  • FBgn0053513 (score: 0.050)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15505-PA (score: 1.000; bootstrap: 100%)
  • GA13857-PA (score: 0.059)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000285900 (score: 1.000; bootstrap: 100%)
  • ENSP00000330148 (score: 1.000; bootstrap: 100%)
  • ENSP00000296526 (score: 0.666)
  • ENSP00000282499 (score: 0.656)
  • ENSP00000264357 (score: 0.644)
  • ENSP00000282020 (score: 0.561)
  • ENSP00000296893 (score: 0.307)
  • ENSP00000296212 (score: 0.298)
  • ENSP00000311646 (score: 0.298)
  • ENSP00000301218 (score: 0.249)
  • ENSP00000278723 (score: 0.249)
  • ENSP00000316696 (score: 0.090)
  • ENSP00000293190 (score: 0.061)
  • ENSP00000279593 (score: 0.057)
  • ENSP00000263269 (score: 0.053)
  • ENSP00000332549 (score: 0.051)

From Inparanoid:20070104

Mus musculus

  • MGI:95808 (score: 1.000; bootstrap: 100%)
  • MGI:95812 (score: 1.000; bootstrap: 100%)
  • MGI:95809 (score: 0.661)
  • MGI:95811 (score: 0.650)
  • MGI:95810 (score: 0.638)
  • MGI:95813 (score: 0.558)
  • MGI:95815 (score: 0.310)
  • MGI:95816 (score: 0.297)
  • MGI:95818 (score: 0.249)
  • MGI:95817 (score: 0.248)
  • MGI:95814 (score: 0.243)
  • MGI:95819 (score: 0.089)
  • MGI:95822 (score: 0.066)
  • MGI:95821 (score: 0.059)
  • MGI:95823 (score: 0.053)
  • MGI:95820 (score: 0.053)

From Inparanoid:20070104

Oryza gramene

  • Q69L09 (score: 1.000; bootstrap: 100%)
  • Q653Y6 (score: 1.000; bootstrap: 100%)
  • Q8LH04 (score: 0.567)
  • Q6ZGL7 (score: 0.509)
  • Q69L15 (score: 0.505)
  • Q69L11 (score: 0.503)
  • Q69L07 (score: 0.501)
  • Q7XP59 (score: 0.501)
  • Q69L05 (score: 0.492)
  • Q5QLP6 (score: 0.360)
  • Q6K4P7 (score: 0.309)
  • Q69NA4 (score: 0.281)
  • Q69NA5 (score: 0.253)
  • Q69TK2 (score: 0.207)
  • Q5VMN1 (score: 0.195)
  • Q69KL0 (score: 0.145)
  • Q69TK3 (score: 0.121)
  • Q69KL2 (score: 0.098)
  • Q69TK5 (score: 0.095)
  • Q69KK7 (score: 0.092)
  • Q69KK9 (score: 0.059)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000132779 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000148659 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000150370 (score: 0.633)
  • NEWSINFRUP00000141976 (score: 0.612)
  • NEWSINFRUP00000130630 (score: 0.605)
  • NEWSINFRUP00000171567 (score: 0.605)
  • NEWSINFRUP00000172679 (score: 0.562)
  • NEWSINFRUP00000131012 (score: 0.525)
  • NEWSINFRUP00000161099 (score: 0.502)
  • NEWSINFRUP00000127449 (score: 0.252)
  • NEWSINFRUP00000161407 (score: 0.250)
  • NEWSINFRUP00000176766 (score: 0.248)
  • NEWSINFRUP00000178985 (score: 0.248)
  • NEWSINFRUP00000170962 (score: 0.215)
  • NEWSINFRUP00000148099 (score: 0.202)
  • NEWSINFRUP00000148098 (score: 0.196)
  • NEWSINFRUP00000169694 (score: 0.139)
  • NEWSINFRUP00000153442 (score: 0.139)
  • NEWSINFRUP00000127386 (score: 0.083)
  • NEWSINFRUP00000127414 (score: 0.075)
  • NEWSINFRUP00000166281 (score: 0.073)
  • NEWSINFRUP00000172202 (score: 0.072)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00011565001 (score: 1.000; bootstrap: 73%)
  • GSTENP00031562001 (score: 0.406)
  • GSTENP00032629001 (score: 0.213)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000040166 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

HISJ

From SHIGELLACYC

E. coli O157

HISJ

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00497 Bacterial extracellular solute-binding proteins, family 3

Superfamily (EcoliWiki Page)

SUPERFAMILY:53850

EcoCyc

EcoCyc:EG12124

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12124

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002027

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2045

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007617

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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