guaB:On One Page

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

<protect>

Standard Name

guaB

Gene Synonym(s)

ECK2504, b2508, JW5401, guaR[1], guaR

Product Desc.

GuaB[2][3];

Component of IMP dehydrogenase[2][3]

Inosine-5'-monophosphate (IMP) dehydrogenase[4]

Product Synonyms(s)

IMP dehydrogenase[1], B2508[2][1], GuaR[2][1], GuaB[2][1] , ECK2504, guaR, JW5401, b2508

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): guaBA[2], OP00288

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

[back to top]


De novo biosyntheis of guanine nucleotides is rate-limited by IMP. IMP has two regions, one catalytic domain and the other a functionaly conserved single-stranded nucleic acid binding subdomain.[4]



Gene

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> <protect>

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

guaB

Mnemonic

synthesis of a guanine precursor Guanine

Synonyms

ECK2504, b2508, JW5401, guaR[1], guaR

</protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

56.7 minutes 

MG1655: 2632092..2630626
<gbrowseImage> name=NC_000913:2630626..2632092 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2554889..2553423
<gbrowseImage> name=NC_012967:2553423..2554889 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2516431..2517897
<gbrowseImage> name=NC_012759:2516431..2517897 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2632726..2631260
<gbrowseImage> name=NC_007779:2631260..2632726 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2723857..2722391
<gbrowseImage> name=NC_010473:2722391..2723857 source=DH10B preset=GeneLocation </gbrowseImage>

</protect>

Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2630626

Edman degradation

PMID:9298646
PMID:9600841
PMID:9629924
PMID:9740056


<protect></protect>

Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔguaB (Keio:JW5401)

deletion

deletion

PMID:16738554

Shigen
CGSC11366[5]

guaB::Tn5KAN-2 (FB20833)

Insertion at nt 751 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20833

contains pKD46

guaB22

CGSC:5393

guaB24

CGSC:6290

guaB27

CGSC:11272

ΔguaB757::kan

PMID:16738554

CGSC:101294


<protect></protect>

Notes

Genetic Interactions

[back to top]


<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

</protect>

Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5401

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCTACGTATCGCTAAAGAAGC

Primer 2:CCGGAGCCCAGACGGTAGTTCGG

5A11

Kohara Phage

Genobase

PMID:3038334

8E3

Kohara Phage

Genobase

PMID:3038334

purC80::Tn10

Linked marker

CAG18470 = CGSC7413[5]

est. P1 cotransduction: 22% [6]

zfh-208::Tn10

Linked marker

CAG18481 = CGSC7417[5]

est. P1 cotransduction: 27% [6]
Synonyms:zff-208::Tn10

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10421

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10421

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000414

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946985

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0416

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008257

Escherichia coli str. K-12 substr. MG1655

<protect></protect>

Notes

Links

[back to top]



Product(s)

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GuaB

Synonyms

IMP dehydrogenase[1], B2508[2][1], GuaR[2][1], GuaB[2][1] , ECK2504, guaR, JW5401, b2508

Product description

GuaB[2][3];

Component of IMP dehydrogenase[2][3]

Inosine-5'-monophosphate (IMP) dehydrogenase[4]

EC number (for enzymes)

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001093

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013785

F

Seeded from EcoCyc (v14.0)

complete

GO:0003938

IMP dehydrogenase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005990

F

Seeded from EcoCyc (v14.0)

complete

GO:0003938

IMP dehydrogenase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018529

F

Seeded from EcoCyc (v14.0)

complete

GO:0003938

IMP dehydrogenase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.1.1.205

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006164

purine nucleotide biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0658

P

Seeded from EcoCyc (v14.0)

complete

GO:0006177

GMP biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0332

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013785

P

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015875

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0030955

potassium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0630

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001093

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005990

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015875

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018529

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of IMP dehydrogenase

could be indirect


</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MLRIAKEALT FDDVLLVPAH STVLPNTADL STQLTKTIRL NIPMLSAAMD TVTEARLAIA
LAQEGGIGFI HKNMSIERQA EEVRRVKKHE SGVVTDPQTV LPTTTLREVK ELTERNGFAG
YPVVTEENEL VGIITGRDVR FVTDLNQPVS VYMTPKERLV TVREGEAREV VLAKMHEKRV
EKALVVDDEF HLIGMITVKD FQKAERKPNA CKDEQGRLRV GAAVGAGAGN EERVDALVAA
GVDVLLIDSS HGHSEGVLQR IRETRAKYPD LQIIGGNVAT AAGARALAEA GCSAVKVGIG
PGSICTTRIV TGVGVPQITA VADAVEALEG TGIPVIADGG IRFSGDIAKA IAAGASAVMV
GSMLAGTEES PGEIELYQGR SYKSYRGMGS LGAMSKGSSD RYFQSDNAAD KLVPEGIEGR
VAYKGRLKEI IHQQMGGLRS CMGLTGCGTI DELRTKAEFV RISGAGIQES HVHDVTITKE
SPNYRLGS
Length

488

Mol. Wt

52.021 kDa

pI

6.4 (calculated)

Extinction coefficient

13,410 - 14,035 (calc based on 9 Y, 0 W, and 5 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

90..142

PF00571 CBS domain

PMID:19920124

Domain

149..206

PF00571 CBS domain

PMID:19920124

Domain

7..473

PF00478 IMP dehydrogenase / GMP reductase domain

PMID:19920124

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=guaB taxon=562,83333 </beststructure>

Models

View models at:

</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130433

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946985

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008257

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ADG7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10421

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10421

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946985

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000414

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0416

Escherichia coli str. K-12 substr. MG1655

<protect></protect>

Notes

Links

[back to top]




Expression

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

8.52E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 EMG2

600

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: Ml9

PMID: 9298646

Protein

E. coli K-12 MG1655

25233

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

5538

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

18437

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Notes

Transcription and Transcriptional Regulation

[back to top]


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

guaBA

Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


<protect><gbrowseImage> name=NC_000913:2632072..2632112 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2508 (EcoliWiki Page)

NCBI GEO profiles for guaB

microarray

GenExpDB:b2508 (EcoliWiki Page)

Summary of data for guaB from multiple microarray studies


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2632015..2632289) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ04; Well:G6[7]

<protect></protect>

Notes

Accessions Related to guaB Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10421

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0416

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2508

EcoGene

EcoGene:EG10421

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000414

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008257

Escherichia coli str. K-12 substr. MG1655

<protect></protect>

Notes

Links

[back to top]



Evolution

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012632 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000022813 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G16350 (score: 1.000; bootstrap: 100%)
  • AT1G79470 (score: 0.812)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000000374 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028113 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020682 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000017589 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000002420 (score: 0.708)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014530 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030114-5 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-421 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050327-96 (score: 0.783)
  • ZDB-CDNA-040704-15 (score: 0.781)
  • ZDB-GENE-040704-15 (score: 0.781)
  • ZDB-GENE-030219-206 (score: 0.766)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230098 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003204 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14756-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000011185 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000321584 (score: 1.000; bootstrap: 100%)
  • ENSP00000345096 (score: 0.787)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007477 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000019049 (score: 0.579)
  • ENSMMUP00000000964 (score: 0.497)
  • ENSMMUP00000022982 (score: 0.496)
  • ENSMMUP00000031114 (score: 0.460)
  • ENSMMUP00000011972 (score: 0.377)
  • ENSMMUP00000005201 (score: 0.272)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000016700 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018919 (score: 0.746)

From Inparanoid:20070104

Mus musculus

  • MGI:109367 (score: 1.000; bootstrap: 100%)
  • MGI:96567 (score: 0.781)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000040635 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000027173 (score: 0.781)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR216W (score: 1.000; bootstrap: 100%)
  • YLR432W (score: 0.919)
  • YML056C (score: 0.801)
  • YAR073W (score: 0.545)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC2F124c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000145930 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000132537 (score: 0.701)
  • NEWSINFRUP00000147351 (score: 0.568)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022603001 (score: 1.000; bootstrap: 99%)
  • GSTENP00033338001 (score: 0.674)
  • GSTENP00020813001 (score: 0.634)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015166 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

GUAB

From SHIGELLACYC

E. coli O157

GUAB

From ECOO157CYC


Do-It-Yourself Web Tools

<protect></protect>

Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00478 IMP dehydrogenase / GMP reductase domain

Pfam (EcoliWiki Page)

PF00571 CBS domain

Pfam (EcoliWiki Page)

PF00571 CBS domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51412

Panther (EcoliWiki Page)

PTHR11911:SF6

Superfamily (EcoliWiki Page)

SUPERFAMILY:54631

Superfamily (EcoliWiki Page)

SUPERFAMILY:54631

EcoCyc

EcoCyc:EG10421

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10421

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000414

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0416

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008257

Escherichia coli str. K-12 substr. MG1655

<protect></protect>

Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

[back to top]