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Gene |

Product(s) |

Expression|

Evolution |

References |

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Standard Name	ftsP
Gene Synonym(s)	ECK3008, b3017, JW2985, FtsP, SuI, yghC, sufI^[1], sufI, sui, ygiJ
Product Desc.	suppressor of ftsI^[2]^[3]
Product Synonyms(s)	repressor protein for FtsI^[1], B3017^[2]^[1], Sui^[2]^[1], SufI^[2]^[1] , ECK3008, JW2985, sufI, sui, ygiJ, b3017
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	ftsP
Mnemonic	suppression of Fts Filamentation, temperature sensitive
Synonyms	ECK3008, b3017, JW2985, FtsP, SuI, yghC, sufI^[1], sufI, sui, ygiJ
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	68.09 minutes	MG1655: 3160691..3159279 <gbrowseImage> name=NC_000913:3159279..3160691 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
BW2952		NC_012759: 3046427..3047839 <gbrowseImage> name=NC_012759:3046427..3047839 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 3161325..3159913 <gbrowseImage> name=NC_007779:3159913..3161325 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
Coding Start (SO:0000323)	MG1655	3159282	Edman degradation	PMID:9298646
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
ΔsufI (Keio:JW2985)	deletion	deletion			PMID:16738554	Shigen CGSC10290^[4]
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW2985	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCTCACTCAGTCGGCGTCAGTT Primer 2:CCtGGTACCGGATTGACCAACAG
metC162::Tn10	Linked marker	CAG18475 = CGSC7435^[4]	est. P1 cotransduction: 74% ^[5]
tolC210::Tn10	Linked marker	CAG12184 = CGSC7437^[4]	est. P1 cotransduction: 51% ^[5]
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11376	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11376	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001344	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:944982	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1350	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009905	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	SufI
Synonyms	repressor protein for FtsI^[1], B3017^[2]^[1], Sui^[2]^[1], SufI^[2]^[1] , ECK3008, JW2985, sufI, sui, ygiJ, b3017
Product description	suppressor of ftsI^[2]^[3]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki. See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005507	copper ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011706	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005507	copper ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011707	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001117	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011706	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011707	F	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001117	P	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011706	P	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011707	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	atoC	PMID:16606699	Experiment(s):EBI-1144549
Protein	groL	PMID:16606699	Experiment(s):EBI-1144549
Protein	srmB	PMID:16606699	Experiment(s):EBI-1144549
Protein	hslU	PMID:16606699	Experiment(s):EBI-1144549
Protein	cysP	PMID:16606699	Experiment(s):EBI-1144549
Protein	yfbN	PMID:19402753	LCMS(ID Probability):99.6
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki. </protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
Periplasm		PMID:9298646	EchoLocation:sufI
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MSLSRRQFIQ ASGIALCAGA VPLKASAAGQ QQPLPVPPLL ESRRGQPLFM TVQRAHWSFT PGTRASVWGI NGRYLGPTIR VWKGDDVKLI YSNRLTENVS MTVAGLQVPG PLMGGPARMM SPNADWAPVL PIRQNAATLW YHANTPNRTA QQVYNGLAGM WLVEDEVSKS LPIPNHYGVD DFPVIIQDKR LDNFGTPEYN EPGSGGFVGD TLLVNGVQSP YVEVSRGWVR LRLLNASNSR RYQLQMNDGR PLHVISGDQG FLPAPVSVKQ LSLAPGERRE ILVDMSNGDE VSITCGEAAS IVDRIRGFFE PSSILVSTLV LTLRPTGLLP LVTDSLPMRL LPTEIMAGSP IRSRDISLGD DPGINGQLWD VNRIDVTAQQ GTWERWTVRA DEPQAFHIEG VMFQIRNVNG AMPFPEDRGW KDTVWVDGQV ELLVYFGQPS WAHFPFYFNS QTLEMADRGS IGQLLVNPVP
Length	470
Mol. Wt	51.857 kDa
pI	6.3 (calculated)
Extinction coefficient	86,400 - 86,650 (calc based on 10 Y, 13 W, and 2 C residues)
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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
motif	1-27	UniProt Manual:Signal Peptides	UniProt:P26648
Domain	185..304	PF00394 Multicopper oxidase		PMID:19920124
Domain	341..470	PF07731 Multicopper oxidase		PMID:19920124
Domain	51..168	PF07732 Multicopper oxidase		PMID:19920124
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ftsP taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130913	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:944982	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009905	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P26648	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11376	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11376	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:944982	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001344	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1350	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Reference(s)
Protein	E. coli K-12 MG1655	905	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	196	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	410	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
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Notes

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Reference(s)
Protein	E. coli K-12 MC4100	1.32E+02	molecules/cell	Medium: combined data from rich and minimal media	37
Protein	E. coli K-12 MC4100	1.32E+02	molecules/cell	Medium: combined data from rich and minimal media Temperature (°C): 37 Doubling time (min): Growth Rate(min): Growth phase: other:	emPAI	PMID:18304323
Protein	E. coli K-12 MG1655	905	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	196	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	410	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
sufI
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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3160671..3160711 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b3017 (EcoliWiki Page)	NCBI GEO profiles for sufI
microarray	GenExpDB:b3017 (EcoliWiki Page)	Summary of data for sufI from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
	GFP Fusion	Intergenic region (3160613..3160843) fused to gfpmut2.	OpenBioSystems	GFP fusion described in Zaslaver, et al. Plate:109-AZ08; Well:D8^[6]
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Notes

Accessions Related to ftsP Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11376	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1350	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b3017
EcoGene	EcoGene:EG11376	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001344	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009905	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000000035 (score: 1.000; bootstrap: 68%)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000008010 (score: 1.000; bootstrap: 100%) ENSAPMP00000006188 (score: 0.259) ENSAPMP00000021510 (score: 0.225) ENSAPMP00000008011 (score: 0.179) ENSAPMP00000028827 (score: 0.138) ENSAPMP00000016897 (score: 0.108)	From Inparanoid:20070104
Arabidopsis thaliana	AT1G71040 (score: 1.000; bootstrap: 70%) AT1G23010 (score: 0.781)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000002481 (score: 1.000; bootstrap: 100%) ENSCINP00000018618 (score: 0.249) ENSCINP00000018617 (score: 0.186) ENSCINP00000006845 (score: 0.169)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0039387 (score: 1.000; bootstrap: 100%) FBgn0052557 (score: 0.274) FBgn0032116 (score: 0.175) FBgn0050437 (score: 0.091)	From Inparanoid:20070104
Drosophila pseudoobscura	GA19259-PA (score: 1.000; bootstrap: 100%) GA16988-PA (score: 0.258) GA17667-PA (score: 0.192) GA15844-PA (score: 0.141)	From Inparanoid:20070104
Mus musculus	MGI:1332240 (score: 1.000; bootstrap: 100%) MGI:88476 (score: 0.423) MGI:2685355 (score: 0.399) MGI:88383 (score: 0.267) MGI:88382 (score: 0.246)	From Inparanoid:20070104
Oryza gramene	Q7F757 (score: 1.000; bootstrap: 64%) Q5ZE01 (score: 0.972) Q9AWU4 (score: 0.624) Q5ZDZ9 (score: 0.575) Q5ZE07 (score: 0.411) Q5ZE00 (score: 0.354)	From Inparanoid:20070104
Saccharomyces cerevisiae	YMR058W (score: 1.000; bootstrap: 100%) YFL041W (score: 0.406) YDR506C (score: 0.095)	From Inparanoid:20070104
Shigella flexneri	SUFI	From SHIGELLACYC
E. coli O157	SUFI	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00394 Multicopper oxidase
Superfamily (EcoliWiki Page)	SUPERFAMILY:49503
Superfamily (EcoliWiki Page)	SUPERFAMILY:49503
Superfamily (EcoliWiki Page)	SUPERFAMILY:49503
Panther (EcoliWiki Page)	PTHR11709:SF2
Pfam (EcoliWiki Page)	PF07731 Multicopper oxidase
Pfam (EcoliWiki Page)	PF07732 Multicopper oxidase
EcoCyc	EcoCyc:EG11376	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11376	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001344	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1350	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009905	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 CGSC: The Coli Genetics Stock Center
↑ ^5.0 ^5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

ftsP:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to ftsP Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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