fliI:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

fliI

Gene Synonym(s)

ECK1939, b1941, JW1925, flaC, fla AIII, fla, A, flaAIII[1][2]

Product Desc.

flagellum-specific ATP synthase FliI[2][3];

Component of Flagellar Export Apparatus[3]; Flagellum[3]

Product Synonyms(s)

flagellum-specific ATP synthase[1], B1941[2][1], Fla[2][1], FlaC[2][1], FliI[2][1] , ECK1939, flaC, JW1925, b1941

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): fliFGHIJK[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

fliI

Mnemonic

Flagella

Synonyms

ECK1939, b1941, JW1925, flaC, fla AIII, fla, A, flaAIII[1][2]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

43.42 minutes 

MG1655: 2014578..2015951
<gbrowseImage> name=NC_000913:2014578..2015951 source=MG1655 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1907061..1908434
<gbrowseImage> name=NC_012759:1907061..1908434 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2018691..2020064
<gbrowseImage> name=NC_007779:2018691..2020064 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2105586..2106959
<gbrowseImage> name=NC_010473:2105586..2106959 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔfliI (Keio:JW1925)

deletion

deletion

PMID:16738554

Shigen
CGSC9601[4]

fliI::Tn5KAN-2 (FB20540)

Insertion at nt 1040 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20540

does not contain pKD46

fliI::Tn5KAN-2 (FB20541)

Insertion at nt 1040 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20541

contains pKD46

ΔfliI787::kan

PMID:16738554

CGSC:100942


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1925

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCACCACGCGCCTGACTCGCTG

Primer 2:CCTGACACTGTCGGGAAAATACG

3B3

Kohara Phage

Genobase

PMID:3038334

uvrC279::Tn10

Linked marker

CAG12156 = CGSC7394[4]

est. P1 cotransduction: 40% [5]

zed-3069::Tn10

Linked marker

CAG18451 = CGSC7395[4]

est. P1 cotransduction: 44% [5]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G377

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20266

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002692

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946457

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4163

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006460

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FliI

Synonyms

flagellum-specific ATP synthase[1], B1941[2][1], Fla[2][1], FlaC[2][1], FliI[2][1] , ECK1939, flaC, JW1925, b1941

Product description

flagellum-specific ATP synthase FliI[2][3];

Component of Flagellar Export Apparatus[3]; Flagellum[3]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020005

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005714

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020005

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006754

ATP biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0066

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0006811

ion transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0406

P

Seeded from EcoCyc (v14.0)

complete

GO:0009058

biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005714

P

Seeded from EcoCyc (v14.0)

complete

GO:0009296

flagellum assembly

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020005

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0653

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000194

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020003

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020005

P

Seeded from EcoCyc (v14.0)

complete

GO:0015992

proton transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0375

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000194

F

Seeded from EcoCyc (v14.0)

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020003

F

Seeded from EcoCyc (v14.0)

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020005

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005714

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020005

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0030254

protein secretion by the type III secretion system

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005714

P

Seeded from EcoCyc (v14.0)

complete

GO:0030257

type III protein secretion system complex

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005714

C

Seeded from EcoCyc (v14.0)

complete

GO:0033178

proton-transporting two-sector ATPase complex, catalytic domain

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000194

C

Seeded from EcoCyc (v14.0)

complete

GO:0033178

proton-transporting two-sector ATPase complex, catalytic domain

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020003

C

Seeded from EcoCyc (v14.0)

complete

GO:0033178

proton-transporting two-sector ATPase complex, catalytic domain

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020005

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of Flagellar Export Apparatus

could be indirect

Protein

ycgE

PMID:16606699

Experiment(s):EBI-1141446

Protein

envZ

PMID:16606699

Experiment(s):EBI-1141446

Protein

rplB

PMID:16606699

Experiment(s):EBI-1141446

Protein

groL

PMID:16606699

Experiment(s):EBI-1141446

Protein

gapA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplL

PMID:19402753

LCMS(ID Probability):99.6

Protein

Subunits of Flagellum

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTTRLTRWLT TLDNFEAKMA QLPAVRRYGR LTRATGLVLE ATGLQLPLGA TCVIERQNGS
ETHEVESEVV GFNGQRLFLM PLEEVEGVLP GARVYAKNIS AEGLQSGKQL PLGPALLGRV
LDGSGKPLDG LPSPDTTETG ALITPPFNPL QRTPIEHVLD TGVRPINALL TVGRGQRMGL
FAGSGVGKSV LLGMMARYTR ADVIVVGLIG ERGREVKDFI ENILGAEGRA RSVVIAAPAD
VSPLLRMQGA AYATRIAEDF RDRGQHVLLI MDSLTRYAMA QREIALAIGE PPATKGYPPS
VFAKLPALVE RAGNGISGGG SITAFYTVLT EGDDQQDPIA DSARAILDGH IVLSRRLAEA
GHYPAIDIEA SISRAMTALI SEQHYARVRT FKQLLSSFQR NRDLVSVGAY AKGSDPMLDK
AIALWPQLEG YLQQGIFERA DWEASLQGLE RIFPTVS
Length

457

Mol. Wt

49.316 kDa

pI

6.8 (calculated)

Extinction coefficient

32,890 - 33,015 (calc based on 11 Y, 3 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

161..373

PF00006 ATP synthase alpha/beta family, nucleotide-binding domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fliI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129888

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946457

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006460

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P52612

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G377

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20266

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946457

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002692

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4163

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

4a

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Protein

E. coli K-12 MG1655

1a

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

fliFGHIJK

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2014558..2014598 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1941 (EcoliWiki Page)

NCBI GEO profiles for fliI

microarray

GenExpDB:b1941 (EcoliWiki Page)

Summary of data for fliI from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to fliI Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G377

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4163

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1941

EcoGene

EcoGene:EG20266

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002692

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006460

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024083 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017026 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003501 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027269 (score: 1.000; bootstrap: 71%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00013025 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000015785 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017853 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1143 (score: 1.000; bootstrap: 71%)
  • ZDB-CDNA-040425-2075 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0020367 (score: 1.000; bootstrap: 75%)
  • FBgn0020368 (score: 1.000; bootstrap: 76%)
  • FBgn0032464 (score: 0.731)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11612-PA (score: 1.000; bootstrap: 77%)
  • GA18641-PA (score: 0.700)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023849 (score: 1.000; bootstrap: 77%)
  • ENSGALP00000000062 (score: 0.266)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000273398 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000009663 (score: 1.000; bootstrap: 83%)
  • ENSMMUP00000027293 (score: 0.945)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022649 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Mus musculus

  • MGI:1201780 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000002727 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023887001 (score: 1.000; bootstrap: 63%)
  • GSTENP00019034001 (score: 0.683)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000010739 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

FLII

From SHIGELLACYC

E. coli O157

FLII

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00006 ATP synthase alpha/beta family, nucleotide-binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR15184:SF9

EcoCyc

EcoCyc:G377

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20266

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002692

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4163

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006460

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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