fklB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

fklB

Gene Synonym(s)

ECK4203, b4207, JW5746, ytfC[1], ytfC

Product Desc.

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[2][3];

Component of FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[3]

FKBP-type peptidyl-prolyl cis-trans isomerase; contains pipecolic acid residue[4]

Product Synonyms(s)

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[1], B4207[2][1], YtfC[2][1], FklB[2][1], FKBP22[2][1] , ECK4203, JW5746, ytfC, b4207

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): fklB[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Binds TrxA (Kumar, 2004).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

fklB

Mnemonic

FK506-binding protein-like

Synonyms

ECK4203, b4207, JW5746, ytfC[1], ytfC

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

95.42 minutes 

MG1655: 4426958..4427578
<gbrowseImage> name=NC_000913:4426958..4427578 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4413934..4414554
<gbrowseImage> name=NC_012967:4413934..4414554 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4365693..4366313
<gbrowseImage> name=NC_012759:4365693..4366313 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4433615..4434235
<gbrowseImage> name=NC_007779:4433615..4434235 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4527320..4527940
<gbrowseImage> name=NC_010473:4527320..4527940 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

4426961

Edman degradation

PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔfklB (Keio:JW5746)

deletion

deletion

PMID:16738554

Shigen
CGSC11554[5]

ΔfklB756::kan

PMID:16738554

CGSC:100890


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5746

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCACCACCCCAACTTTTGACAC

Primer 2:CCGAGGATTTCCAGCAGTTCGAC

7E9

Kohara Phage

Genobase

PMID:3038334

cycA30::Tn10

Linked marker

CAG12073 = CGSC7482[5]

est. P1 cotransduction: 98% [6]

zjf-920::Tn10

Linked marker

CAG12019 = CGSC7484[5]

est. P1 cotransduction: 53% [6]
Synonyms:zjh-901::Tn10, zjg-920::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7865

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12503

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004360

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948726

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2396

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013759

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FklB

Synonyms

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[1], B4207[2][1], YtfC[2][1], FklB[2][1], FKBP22[2][1] , ECK4203, JW5746, ytfC, b4207

Product description

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[2][3];

Component of FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[3]

FKBP-type peptidyl-prolyl cis-trans isomerase; contains pipecolic acid residue[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:5.2.1.8

F

Seeded from EcoCyc (v14.0)

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000774

P

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001179

P

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

P

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)

could be indirect

Protein

entB

PMID:15690043

Experiment(s):EBI-883674

Protein

glpF

PMID:15690043

Experiment(s):EBI-883674

Protein

proY

PMID:15690043

Experiment(s):EBI-883674

Protein

trkH

PMID:15690043

Experiment(s):EBI-883674

Protein

trkH

PMID:19402753

LCMS(ID Probability):99.0

Protein

proY

PMID:19402753

LCMS(ID Probability):99.0

Protein

glpF

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MMSVVNPPLL YSYGILLLFL FPWDLSSFPR QSFTQRSVAD MLPATLYPKK GNTMTTPTFD
TIEAQASYGI GLQVGQQLSE SGLEGLLPEA LVAGIADALE GKHPAVPVDV VHRALREIHE
RADAVRRQRF QAMAAEGVKY LEENAKKEGV NSTESGLQFR VINQGEGAIP ARTDRVRVHY
TGKLIDGTVF DSSVARGEPA EFPVNGVIPG WIEALTLMPV GSKWELTIPQ ELAYGERGAG
ASIPPFSTLV FEVELLEIL
Length

259

Mol. Wt

28.251 kDa

pI

4.9 (calculated)

Extinction coefficient

26,930 (calc based on 7 Y, 3 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A9L3

Domain

112..203

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

PMID:19920124

Domain

1..108

PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fklB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111705

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948726

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013759

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9L3

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7865

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12503

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948726

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004360

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2396

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.96E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

121.387+/-0.88

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.89619+/-0.03804

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.263709677

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

340

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M138

PMID: 9298646

Protein

E. coli K-12 MG1655

10247

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2940

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

5110

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

fklB

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:4426938..4426978 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b4207 (EcoliWiki Page)

NCBI GEO profiles for fklB

microarray

GenExpDB:b4207 (EcoliWiki Page)

Summary of data for fklB from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (4426246..4426432) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ08; Well:H9[7]

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Notes

Accessions Related to fklB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7865

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2396

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4207

EcoGene

EcoGene:EG12503

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004360

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013759

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014683 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000002177 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000008197 (score: 0.193)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G25220 (score: 1.000; bootstrap: 95%)
  • AT5G48580 (score: 1.000; bootstrap: 94%)
  • AT3G25230 (score: 0.097)
  • AT5G48570 (score: 0.085)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008269 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000018091 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000010928 (score: 0.857)
  • ENSBTAP00000011007 (score: 0.791)
  • ENSBTAP00000004419 (score: 0.729)
  • ENSBTAP00000019874 (score: 0.489)
  • ENSBTAP00000021025 (score: 0.085)
  • ENSBTAP00000033613 (score: 0.080)
  • ENSBTAP00000020071 (score: 0.080)
  • ENSBTAP00000001452 (score: 0.080)
  • ENSBTAP00000015220 (score: 0.070)
  • ENSBTAP00000009998 (score: 0.068)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027056 (score: 1.000; bootstrap: 100%)
  • WBGene00028338 (score: 1.000; bootstrap: 100%)
  • WBGene00027120 (score: 0.284)
  • WBGene00038380 (score: 0.176)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001426 (score: 1.000; bootstrap: 100%)
  • WBGene00001428 (score: 0.163)
  • WBGene00001431 (score: 0.118)
  • WBGene00001427 (score: 0.094)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000010138 (score: 1.000; bootstrap: 70%)
  • ENSCAFP00000021476 (score: 1.000; bootstrap: 50%)
  • ENSCAFP00000005884 (score: 0.786)
  • ENSCAFP00000012923 (score: 0.095)
  • ENSCAFP00000004543 (score: 0.090)
  • ENSCAFP00000022934 (score: 0.089)
  • ENSCAFP00000001930 (score: 0.089)
  • ENSCAFP00000004699 (score: 0.085)
  • ENSCAFP00000023374 (score: 0.055)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018088 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-7275 (score: 1.000; bootstrap: 89%)
  • ZDB-CDNA-040425-1480 (score: 1.000; bootstrap: 90%)
  • ZDB-CDNA-040926-17 (score: 0.896)
  • ZDB-GENE-040927-9 (score: 0.896)
  • ZDB-CDNA-040425-2725 (score: 0.784)
  • ZDB-GENE-040426-1785 (score: 0.784)
  • ZDB-CDNA-040625-124 (score: 0.194)
  • ZDB-GENE-030131-514 (score: 0.194)
  • ZDB-CDNA-040425-301 (score: 0.187)
  • ZDB-GENE-030616-419 (score: 0.052)
  • ZDB-GENE-050522-470 (score: 0.052)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0203130 (score: 1.000; bootstrap: 97%)
  • DDB0205305 (score: 0.089)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037930 (score: 1.000; bootstrap: 63%)
  • FBgn0010470 (score: 0.188)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13197-PA (score: 1.000; bootstrap: 100%)
  • GA22070-PA (score: 0.210)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026566 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000001396 (score: 0.116)
  • ENSGALP00000029868 (score: 0.094)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000262925 (score: 1.000; bootstrap: 100%)
  • ENSP00000310935 (score: 1.000; bootstrap: 100%)
  • ENSP00000348493 (score: 0.926)
  • ENSP00000238793 (score: 0.793)
  • ENSP00000001008 (score: 0.104)
  • ENSP00000317232 (score: 0.078)
  • ENSP00000338160 (score: 0.074)
  • ENSP00000242209 (score: 0.073)
  • ENSP00000222803 (score: 0.068)
  • ENSP00000256680 (score: 0.068)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016995 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000015350 (score: 0.078)
  • ENSMMUP00000017150 (score: 0.074)
  • ENSMMUP00000009153 (score: 0.069)
  • ENSMMUP00000016447 (score: 0.064)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000024390 (score: 1.000; bootstrap: 66%)
  • ENSMODP00000002601 (score: 0.478)
  • ENSMODP00000022886 (score: 0.092)

From Inparanoid:20070104

Mus musculus

  • MGI:95541 (score: 1.000; bootstrap: 100%)
  • MGI:95542 (score: 1.000; bootstrap: 100%)
  • MGI:1336205 (score: 0.744)
  • MGI:95543 (score: 0.090)
  • MGI:104670 (score: 0.090)
  • MGI:1350921 (score: 0.080)
  • MGI:2387639 (score: 0.080)
  • MGI:1913370 (score: 0.075)
  • MGI:1336879 (score: 0.070)
  • MGI:104769 (score: 0.055)

From Inparanoid:20070104

Oryza gramene

  • Q70YJ6 (score: 1.000; bootstrap: 90%)
  • Q5N801 (score: 0.645)
  • Q43207 (score: 0.091)
  • Q9XFE4 (score: 0.091)
  • Q7F1F2 (score: 0.091)
  • Q6K5Q1 (score: 0.077)
  • Q653Z1 (score: 0.059)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000006573 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000015638 (score: 0.083)
  • ENSPTRP00000032579 (score: 0.069)
  • ENSPTRP00000032523 (score: 0.069)
  • ENSPTRP00000008361 (score: 0.064)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000012608 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000028725 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000019527 (score: 0.080)
  • ENSRNOP00000007821 (score: 0.075)
  • ENSRNOP00000015722 (score: 0.070)
  • ENSRNOP00000022029 (score: 0.065)
  • ENSRNOP00000013205 (score: 0.065)
  • ENSRNOP00000008737 (score: 0.061)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR519W (score: 1.000; bootstrap: 100%)
  • YNL135C (score: 0.112)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC8397c (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000162512 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000139297 (score: 0.619)
  • NEWSINFRUP00000129987 (score: 0.134)
  • NEWSINFRUP00000144593 (score: 0.090)
  • NEWSINFRUP00000128779 (score: 0.075)
  • NEWSINFRUP00000147444 (score: 0.067)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00009727001 (score: 1.000; bootstrap: 100%)
  • GSTENP00023507001 (score: 1.000; bootstrap: 100%)
  • GSTENP00018378001 (score: 0.654)

From Inparanoid:20070104

E. coli O157

FKLB

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

Pfam (EcoliWiki Page)

PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase

Panther (EcoliWiki Page)

PTHR10516:SF17

Superfamily (EcoliWiki Page)

SUPERFAMILY:54534

EcoCyc

EcoCyc:G7865

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12503

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004360

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2396

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013759

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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