cyoA:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
cyoA |
|---|---|
| Mnemonic |
Cytochrome o oxidase |
| Synonyms |
ECK0426, b0432, JW0422[1], JW0422 |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
9.7 minutes |
MG1655: 450834..449887 |
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NC_012967: 422313..421366 |
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NC_012759: 352646..353593 |
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W3110 |
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W3110: 450834..449887 |
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DH10B: 390165..389218 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
cyoA(del) (Keio:JW0422) |
deletion |
deletion |
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cyoA(del)::kan |
deletion |
Biolog:respiration |
unable to respire L-Alanine |
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cyoA(del)::kan |
deletion |
Biolog:respiration |
unable to respire L-Asparagine |
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cyoA(del)::kan |
deletion |
Biolog:respiration |
unable to respire L-Aspartate |
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CydAB (del), cyoABCD (del), cbdAB (del), ygiN (del) |
deletion |
deletion |
deletion of all genes decreased oxygen uptake by 98% via activation of arcA, table 1. |
PMID:20709841[5] |
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cyoA789(del)::FRT |
deletion |
Mutagenesis Rate |
Decrease in stress induced mutagenesis (SIM). |
Parent Strain: SMR4562 Experimental Strain: SMR12570 |
The mutation conferred a significant decrease in SIM with mutant frequency being reduced by 68 to 89 percent. See table S3 for full experimental results. | ||
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cyoA789(del)::FRT |
deletion |
Sensitivity to |
SDS-EDTA Sensitivity |
Parent Strain: SMR4562 Experimental Strain: SMR12570 |
The mutation conferred an increase in SDS-EDTA sensitivity. See table S7 and S1 for full experimental data. | ||
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SMR4562 yiaG-yfp FRTcatFRT cyoA789(del)::FRTKanFRT |
Deletion & Insertion |
Sigma S activity |
Decrease in SigmaS activity |
Parental Strain: SMR10582 Experimental Strain: SMR14283 |
See table S8 for full experimental data. | ||
|
CAG45114 cyoA789(del)::FRTKanFRT |
deletion |
SigmaE activity |
Decrease in SigmaE activity |
Parental Strain: CAG45114 Experimental Strain: SMR15330 |
See table S11 for full experimental results. | ||
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0422 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAGACTCAGGAAATACAATAA Primer 2:CCATGGGCGGATTCCGCGTGGCT | |
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Kohara Phage |
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Kohara Phage |
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Linked marker |
est. P1 cotransduction: 52% [9] | ||
|
Linked marker |
est. P1 cotransduction: 72% [9] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ 4.0 4.1 4.2 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
- ↑ Portnoy, VA et al. (2010) Deletion of genes encoding cytochrome oxidases and quinol monooxygenase blocks the aerobic-anaerobic shift in Escherichia coli K-12 MG1655. Appl. Environ. Microbiol. 76 6529-40 PubMed
- ↑ 6.0 6.1 6.2 6.3 Al Mamun, AA et al. (2012) Identity and function of a large gene network underlying mutagenic repair of DNA breaks. Science 338 1344-8 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 8.0 8.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 9.0 9.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
