cspC:On One Page
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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Standard Name |
cspC |
---|---|
Gene Synonym(s) |
ECK1821, b1823, JW1812, msmB[1], msmB |
Product Desc. |
stress protein, member of the CspA family[2]; stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator[3] Multicopy suppressor of mukB; cold shock protein homolog constitutively expressed at 37C; affects rpoS and uspA expression[4] |
Product Synonyms(s) |
stress protein, member of the CspA-family[1], B1823[2][1], MsmB[2][1], CspC[2][1] , ECK1821, JW1812, msmB, b1823 |
Function from GO |
<GO_nr /> |
Knock-Out Phenotype | |
Regulation/Expression | |
Regulation/Activity | |
Quick Links | |
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</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>
Notes
HT_Cmplx32_Mem: CspC+Hns+HupA.[4]
Gene
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
Standard name |
cspC |
---|---|
Mnemonic |
Cold shock protein |
Synonyms |
ECK1821, b1823, JW1812, msmB[1], msmB |
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Notes
Location(s) and DNA Sequence
<protect>
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
---|---|---|---|---|
MG1655 |
41.06 minutes, 41.06 minutes |
MG1655: 1905459..1905250 |
||
NC_012967: 1886014..1885805 |
||||
NC_012759: 1797309..1797518 |
||||
W3110 |
|
W3110: 1909149..1908940 |
||
DH10B: 1996030..1995821 |
||||
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
---|---|---|---|---|---|
Coding Start (SO:0000323) |
1905253 |
Edman degradation |
PMID:8740179 |
| |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
---|---|---|---|---|---|---|---|
cspC(del) (Keio:JW1812) |
deletion |
deletion |
PMID:16738554 |
||||
cspC747(del)::kan |
PMID:16738554 |
||||||
cspC747(del)::FRTKanFRT |
Mutagenesis rate |
Decreased stress-induced mutagenesis (SIM) phenotype. |
PMID:23224554 |
Parental Strain: SMR4562 Experimental Strain: SMR12148 |
Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population. | ||
SMR4562 yiaG-yfp FRTcatFRT cspC747(del)::FRTKanFRT |
deletion |
Sigma S activity |
Decrease in SigmaS activity |
PMID:23224554 |
Parental Strain: SMR10582 Experimental Strain: SMR14263 |
See table S8 for full experimental data. | |
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Notes
Genetic Interactions
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Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
Resource | Resource Type | Source | Notes/Reference |
---|---|---|---|
JW1812 |
Plasmid clone |
PMID:16769691 Status:Clone OK Primer 1:GCCGCAAAGATTAAAGGTCAGGT Primer 2:CCGATAGCTGTTACGTTAACAGC | |
Kohara Phage |
PMID:3038334 | ||
Linked marker |
est. P1 cotransduction: 24% [6] | ||
Linked marker |
est. P1 cotransduction: 39% [6] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:EG12204 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG12204 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120002092 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
EchoBASE:EB2120 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0006070 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
---|---|---|
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Product(s)
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Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Standard name |
CspC |
---|---|
Synonyms |
stress protein, member of the CspA-family[1], B1823[2][1], MsmB[2][1], CspC[2][1] , ECK1821, JW1812, msmB, b1823 |
Product description |
stress protein, member of the CspA family[2]; stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator[3] Multicopy suppressor of mukB; cold shock protein homolog constitutively expressed at 37C; affects rpoS and uspA expression[4] |
EC number (for enzymes) |
|
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Notes
Function
<protect>
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
---|---|---|---|---|---|---|---|---|
GO:0001072 |
RNA binding transcription antitermination factor activity |
PMID:10884409 |
IDA: Inferred from Direct Assay |
F |
complete | |||
GO:0003676 |
nucleic acid binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR011129 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0003676 |
nucleic acid binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR012156 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0003677 |
DNA binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR002059 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0003677 |
DNA binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0238 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005737 |
cytoplasm |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0963 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005737 |
cytoplasm |
GO_REF:0000023 |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0086 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0006350 |
transcription |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0804 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0006355 |
regulation of transcription, DNA-dependent |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR002059 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0016020 |
membrane |
PMID:16858726 |
IDA: Inferred from Direct Assay |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0060567 |
negative regulation of transcription termination |
PMID:10884409 |
IDA: Inferred from Direct Assay |
P |
complete | |||
GO:0003723 |
RNA binding |
PMID:10476034 |
IDA: Inferred from Direct Assay |
F |
Figure 2 |
complete | ||
GO:0003697 |
single-stranded DNA binding |
PMID:10476034 |
IDA: Inferred from Direct Assay |
F |
Figure 4 |
complete | ||
edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Partner Type | Partner | Notes | References | Evidence |
---|---|---|---|---|
Protein |
accA |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
aidB |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
deaD |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-881486, EBI-883980 | |
Protein |
hrpA |
PMID:15690043 |
Experiment(s):EBI-879643 | |
Protein |
pnp |
PMID:15690043 |
Experiment(s):EBI-879643 | |
Protein |
rho |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rplA |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rplB |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rplC |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rplE |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rplM |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rpsA |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rpsB |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rpsD |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rpsE |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rpsG |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rpsM |
PMID:15690043 |
Experiment(s):EBI-879643 | |
Protein |
rnr |
PMID:15690043 |
Experiment(s):EBI-879643 | |
Protein |
ycbY |
PMID:15690043 |
Experiment(s):EBI-879643 | |
Protein |
rluC |
PMID:15690043 |
Experiment(s):EBI-879643 | |
Protein |
rluB |
PMID:15690043 |
Experiment(s):EBI-879643 | |
Protein |
yfiF |
PMID:15690043 |
Experiment(s):EBI-879643 | |
Protein |
yhiR |
PMID:15690043 |
Experiment(s):EBI-879643, EBI-883980 | |
Protein |
rplD |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rplI |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rplR |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rplS |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rplU |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rplV |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rplW |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rplX |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rpsC |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rpsF |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rpsI |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rpsJ |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rpsN |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rpsT |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rsmB |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
gmr |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
ydaY |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
yhbY |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
yhiP |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
yjdB |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rluE |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
accD |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
yeeJ |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
creC |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
cspE |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
dnaJ |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
entB |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
glpK |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
hupA |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
hupB |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
metR |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
prpD |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
putA |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rcsB |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
recN |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rfaJ |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
rhlE |
PMID:15690043 |
Experiment(s):EBI-883980 | |
Protein |
topA |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
uspG |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
rpsG |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
rpsM |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
rplA |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
rplB |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
cpxR |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
rplD |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
rpsD |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
nadE |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
ycgE |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
rpsC |
PMID:16606699 |
Experiment(s):EBI-1140933 | |
Protein |
accD |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):3.000505 | |
Protein |
dnaJ |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):10.363976 | |
Protein |
rpsT |
PMID:19402753 |
LCMS(ID Probability):99.6 | |
Protein |
hupB |
PMID:19402753 |
LCMS(ID Probability):99.0 | |
Protein |
rpsJ |
PMID:19402753 |
LCMS(ID Probability):99.6 MALDI(Z-score):3.290188 | |
Protein |
rplS |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):4.815931 | |
Protein |
rho |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):39.189659 | |
Protein |
rplI |
PMID:19402753 |
LCMS(ID Probability):99.6 MALDI(Z-score):8.825591 | |
Protein |
rpsN |
PMID:19402753 |
LCMS(ID Probability):99.6 | |
Protein |
rpsM |
PMID:19402753 |
LCMS(ID Probability):80.0 MALDI(Z-score):18.672179 | |
Protein |
rplX |
PMID:19402753 |
LCMS(ID Probability):99.6 | |
Protein |
rpsF |
PMID:19402753 |
LCMS(ID Probability):99.0 | |
Protein |
rpsA |
PMID:19402753 |
LCMS(ID Probability):99.6 MALDI(Z-score):27.294551 | |
Protein |
rplM |
PMID:19402753 |
LCMS(ID Probability):99.6 MALDI(Z-score):3.999468 | |
Protein |
rpsC |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):24.294405 | |
Protein |
hupA |
PMID:19402753 |
LCMS(ID Probability):99.0 | |
Protein |
rpsD |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):36.483049 | |
Protein |
clpA |
PMID:19402753 |
MALDI(Z-score):18.860804 | |
Protein |
rplB |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):31.855298 | |
Protein |
rplE |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):8.291252 | |
Protein |
rplW |
PMID:19402753 |
LCMS(ID Probability):99.6 | |
Protein |
accA |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):31.439125 | |
Protein |
rplA |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):31.854353 | |
Protein |
rplR |
PMID:19402753 |
LCMS(ID Probability):99.6 | |
Protein |
rplD |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):4.275541 | |
Protein |
rlmL |
PMID:19402753 |
MALDI(Z-score):26.179233 | |
Protein |
yfiF |
PMID:19402753 |
MALDI(Z-score):36.427608 | |
Protein |
aidB |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):24.911783 | |
Protein |
rnr |
PMID:19402753 |
MALDI(Z-score):24.701159 | |
Protein |
recN |
PMID:19402753 |
LCMS(ID Probability):99.4 | |
Protein |
rluB |
PMID:19402753 |
LCMS(ID Probability):90.0 MALDI(Z-score):37.004990 | |
Protein |
pnp |
PMID:19402753 |
MALDI(Z-score):23.617200 | |
Protein |
hfq |
PMID:19402753 |
LCMS(ID Probability):99.6 | |
Protein |
yhiR |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):38.827197 | |
Protein |
hrpA |
PMID:19402753 |
MALDI(Z-score):18.552100 | |
Protein |
rluC |
PMID:19402753 |
LCMS(ID Probability):90.0 MALDI(Z-score):34.129450 | |
Protein |
cspE |
PMID:19402753 |
LCMS(ID Probability):99.0 | |
Protein |
ybjX |
PMID:19402753 |
MALDI(Z-score):21.166940 | |
Protein |
rhlE |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):9.883347 | |
edit table |
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Notes
selective RNA binding sequence
AGGGAGGGA
PMID: 10476034
Figure 1
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Compartment | Description | Evidence | Reference/Source | Notes |
---|---|---|---|---|
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Notes
Structure and Physical Properties
<protect>
Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Name | |
---|---|
Sequence |
MAKIKGQVKW FNESKGFGFI TPADGSKDVF VHFSAIQGNG FKTLAEGQNV EFEIQDGQKG PAAVNVTAI |
Length |
69 |
Mol. Wt |
7.401 kDa |
pI |
7.3 (calculated) |
Extinction coefficient |
5,500 (calc based on 0 Y, 1 W, and 0 C residues) |
edit table |
Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure
| </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Resource type | Source | Notes/Reference |
---|---|---|
edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
ASAP:ABE-0006070 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
EcoCyc:EG12204 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG12204 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
RegulonDB:ECK120002092 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB2120 |
Escherichia coli str. K-12 substr. MG1655 | |
edit table |
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Notes
Links
Name | URL | Comments |
---|---|---|
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Expression
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Overview
This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Cellular Levels
Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
---|---|---|---|---|---|---|---|
Protein |
E. coli K-12 MC4100 |
5.85E+03 |
molecules/cell |
|
emPAI |
PMID:18304323 | |
Protein |
Ecoli K-12 |
7890.539+/-69.415 |
Molecules/cell |
|
Single Molecule Fluorescence |
PMID:20671182 | |
mRNA |
Ecoli K-12 |
6.578947368 |
Molecules/cell |
|
by RNA_Seq |
PMID:20671182 | |
Protein |
E. coli K-12 EMG2 |
8300 |
molecules/cell |
|
Quantitative protein sequencing |
Spot ID: M39 |
PMID: 9298646 |
Protein |
E. coli K-12 MG1655 |
106172 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
Protein |
E. coli K-12 MG1655 |
50154 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
Protein |
E. coli K-12 MG1655 |
80903 |
molecules/cell/generation |
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Ribosome Profiling |
PMID: 24766808 | |
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Notes
Transcription and Transcriptional Regulation
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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
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Notes
This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Translation and Regulation of Translation
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name=NC_000913:1905439..1905479
source=MG1655
flip=1
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
This picture shows the sequence around the N-terminus.
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Notes
This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Turnover and Regulation of Turnover
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Notes
This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.
Experimental
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Mutations Affecting Expression
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
Allele Name | Mutation | Phenotype | Reference |
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Expression Studies
See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
Type | Reference | Notes |
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microarray |
NCBI GEO profiles for cspC | |
microarray |
Summary of data for cspC from multiple microarray studies | |
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Expression Resources
See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
Resource Name | Resource Type | Description | Source | Notes |
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Notes
Accessions Related to cspC Expression
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:EG12204 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB2120 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG12204 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120002092 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0006070 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
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Evolution
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Homologs in Other Organisms
See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
Organism | Homologs (Statistics) | Comments |
---|---|---|
Anopheles gambiae |
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From Inparanoid:20070104 |
Apis mellifera |
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From Inparanoid:20070104 |
Arabidopsis thaliana |
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From Inparanoid:20070104 |
Bos taurus |
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From Inparanoid:20070104 |
Caenorhabditis briggsae |
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From Inparanoid:20070104 |
Caenorhabditis elegans |
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From Inparanoid:20070104 |
Canis familiaris |
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From Inparanoid:20070104 |
Ciona intestinalis |
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From Inparanoid:20070104 |
Danio rerio |
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From Inparanoid:20070104 |
Drosophila melanogaster |
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From Inparanoid:20070104 |
Drosophila pseudoobscura |
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From Inparanoid:20070104 |
Gallus gallus |
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From Inparanoid:20070104 |
Homo sapiens |
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From Inparanoid:20070104 |
Macaca mulatta |
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From Inparanoid:20070104 |
Monodelphis domestica |
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From Inparanoid:20070104 |
Mus musculus |
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From Inparanoid:20070104 |
Oryza gramene |
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From Inparanoid:20070104 |
Pan troglodytes |
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From Inparanoid:20070104 |
Rattus norvegicus |
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From Inparanoid:20070104 |
Takifugu rubripes |
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From Inparanoid:20070104 |
Tetraodon nigroviridis |
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From Inparanoid:20070104 |
Xenopus tropicalis |
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From Inparanoid:20070104 |
Shigella flexneri |
CSPC |
From SHIGELLACYC |
E. coli O157 |
CSPC |
From ECOO157CYC |
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Do-It-Yourself Web Tools
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Notes
Families
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:EG12204 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG12204 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120002092 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB2120 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0006070 |
Escherichia coli str. K-12 substr. MG1655 | |
edit table |
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Notes
Links
Name | URL | Comments |
---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
Categories
- Genes with homologs in Anopheles gambiae
- Genes with homologs in Apis mellifera
- Genes with homologs in Arabidopsis thaliana
- Genes with homologs in Bos taurus
- Genes with homologs in Caenorhabditis briggsae
- Genes with homologs in Caenorhabditis elegans
- Genes with homologs in Canis familiaris
- Genes with homologs in Ciona intestinalis
- Genes with homologs in Danio rerio
- Genes with homologs in Drosophila melanogaster
- Genes with homologs in Drosophila pseudoobscura
- Genes with homologs in Gallus gallus
- Genes with homologs in Homo sapiens
- Genes with homologs in Macaca mulatta
- Genes with homologs in Monodelphis domestica
- Genes with homologs in Mus musculus
- Genes with homologs in Oryza gramene
- Genes with homologs in Pan troglodytes
- Genes with homologs in Rattus norvegicus
- Genes with homologs in Takifugu rubripes
- Genes with homologs in Tetraodon nigroviridis
- Genes with homologs in Xenopus tropicalis
- Genes with homologs in Shigella flexneri
- Genes with homologs in E. coli O157