atpD:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

atpD

Gene Synonym(s)

ECK3725, b3732, JW3710, papD, uncD, papB, unc[1]

Product Desc.

ATP synthase, F1 complex, β subunit[2][3];

Component of β subunit complex[2][3]; ATP synthase, F1 complex[2][3]; ATP synthase[2][3]

ATP synthase subunit beta, membrane-bound, F1 sector[4]

Product Synonyms(s)

F1 sector of membrane-bound ATP synthase, beta subunit[1], B3732[2][1], Unc[2][1], UncD[2][1], PapB[2][1], AtpD[2][1] , ECK3725, JW3710, papB, uncD, b3732

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): atpBEFHAGDC[2], atpIBEFHAGDC[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Binds TrxA (Kumar, 2004). HT_Cmplx10_Mem: AtpA+AtpD+AtpG. HT_Cmplx1_Cyt: AtpA+AtpD.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

atpD

Mnemonic

ATP

Synonyms

ECK3725, b3732, JW3710, papD, uncD, papB, unc[1]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

84.36 minutes 

MG1655: 3915398..3914016
<gbrowseImage> name=NC_000913:3914016..3915398 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3877741..3876359
<gbrowseImage> name=NC_012967:3876359..3877741 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3802349..3803731
<gbrowseImage> name=NC_012759:3802349..3803731 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3719306..3720688
<gbrowseImage> name=NC_007779:3719306..3720688 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4012982..4011600
<gbrowseImage> name=NC_010473:4011600..4012982 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3914019

Edman degradation

PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

atpDT157A,C

T157A,C

Impairs ATPase activity

seeded from UniProt:P0ABB4

ΔatpD (Keio:JW3710)

deletion

deletion

PMID:16738554

Shigen
CGSC10712[5]

atpD::Tn5KAN-I-SceI (FB21423)

Insertion at nt 1180 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21423

contains pKD46

atpD::Tn5KAN-I-SceI (FB21424)

Insertion at nt 1180 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21424

does not contain pKD46

atpD409

CGSC:7163

ΔatpD761::kan

PMID:16738554

CGSC:100140


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3710

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGCTACTGGAAAGATTGTCCA

Primer 2:CCAAGTTTTTTGGCTTTTTCCAC

2A1

Kohara Phage

Genobase

PMID:3038334

zid-501::Tn10

Linked marker

CAG18499 = CGSC7458[5]

est. P1 cotransduction: 19% [6]

rbsD296::Tn10

Linked marker

CAG18501 = CGSC7460[5]

est. P1 cotransduction: 57% [6]
Synonyms:zie-296::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10101

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10101

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000097

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948244

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0099

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012208

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AtpD

Synonyms

F1 sector of membrane-bound ATP synthase, beta subunit[1], B3732[2][1], Unc[2][1], UncD[2][1], PapB[2][1], AtpD[2][1] , ECK3725, JW3710, papB, uncD, b3732

Product description

ATP synthase, F1 complex, β subunit[2][3];

Component of β subunit complex[2][3]; ATP synthase, F1 complex[2][3]; ATP synthase[2][3]

ATP synthase subunit beta, membrane-bound, F1 sector[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

PMID:158358

IMP: Inferred from Mutant Phenotype

C

Component of F1 ATP synthase, with gene products of uncA (alpha), uncG (gamma), uncH (delta) and uncC (epsilon) - for a review, see Chapter 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01347

F

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

PMID:2863270

IDA: Inferred from Direct Assay

F

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0008553

hydrogen-exporting ATPase activity, phosphorylative mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005722

F

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000194

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000793

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005722

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020003

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000194

F

Seeded from EcoCyc (v14.0)

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000793

F

Seeded from EcoCyc (v14.0)

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020003

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0042777

plasma membrane ATP synthesis coupled proton transport

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01347

P

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005722

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0139

C

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01347

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004100

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005722

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018118

F

Seeded from EcoCyc (v14.0)

complete

GO:0046961

proton-transporting ATPase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004100

F

Seeded from EcoCyc (v14.0)

complete

GO:0046961

proton-transporting ATPase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018118

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of β subunit complex

could be indirect

Protein

rplE

PMID:16606699

Experiment(s):EBI-1146605

Protein

atpA

PMID:16606699

Experiment(s):EBI-1146605

Protein

glpD

PMID:16606699

Experiment(s):EBI-1146605

Protein

rpsB

PMID:16606699

Experiment(s):EBI-1146605

Protein

rplF

PMID:16606699

Experiment(s):EBI-1146605

Protein

ftsZ

PMID:16606699

Experiment(s):EBI-1146605

Protein

rho

PMID:16606699

Experiment(s):EBI-1146605

Protein

recA

PMID:16606699

Experiment(s):EBI-1146605

Protein

Subunits of ATP synthase, F1 complex

could be indirect

Protein

Subunits of ATP synthase

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]

Cytoplasm

PMID:9298646

EchoLocation:atpD


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MATGKIVQVI GAVVDVEFPQ DAVPRVYDAL EVQNGNERLV LEVQQQLGGG IVRTIAMGSS
DGLRRGLDVK DLEHPIEVPV GKATLGRIMN VLGEPVDMKG EIGEEERWAI HRAAPSYEEL
SNSQELLETG IKVIDLMCPF AKGGKVGLFG GAGVGKTVNM MELIRNIAIE HSGYSVFAGV
GERTREGNDF YHEMTDSNVI DKVSLVYGQM NEPPGNRLRV ALTGLTMAEK FRDEGRDVLL
FVDNIYRYTL AGTEVSALLG RMPSAVGYQP TLAEEMGVLQ ERITSTKTGS ITSVQAVYVP
ADDLTDPSPA TTFAHLDATV VLSRQIASLG IYPAVDPLDS TSRQLDPLVV GQEHYDTARG
VQSILQRYQE LKDIIAILGM DELSEEDKLV VARARKIQRF LSQPFFVAEV FTGSPGKYVS
LKDTIRGFKG IMEGEYDHLP EQAFYMVGSI EEAVEKAKKL
Length

460

Mol. Wt

50.325 kDa

pI

4.8 (calculated)

Extinction coefficient

27,850 - 27,975 (calc based on 15 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0ABB4

Domain

355..460

PF00306 ATP synthase alpha/beta chain, C terminal domain

PMID:19920124

Domain

6..73

PF02874 ATP synthase alpha/beta family, beta-barrel domain

PMID:19920124

Domain

129..342

PF00006 ATP synthase alpha/beta family, nucleotide-binding domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atpD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131600

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948244

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012208

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ABB4

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10101

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10101

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948244

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000097

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0099

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

3.11E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

685.856+/-3.117

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

3.2585+/-0.17316

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

1.078871201

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

1210

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: 1\13

PMID: 9298646

Protein

E. coli K-12 MG1655

30603

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

8213

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

18320

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

atpBEFHAGDC

atpIBEFHAGDC

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3915378..3915418 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3732 (EcoliWiki Page)

NCBI GEO profiles for atpD

microarray

GenExpDB:b3732 (EcoliWiki Page)

Summary of data for atpD from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to atpD Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10101

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0099

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3732

EcoGene

EcoGene:EG10101

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000097

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012208

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024137 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000016868 (score: 0.967)
  • ENSANGP00000016863 (score: 0.583)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000023054 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G08670 (score: 1.000; bootstrap: 100%)
  • AT5G08680 (score: 1.000; bootstrap: 100%)
  • AT5G08690 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000017710 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000040050 (score: 0.166)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040018 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000229 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000202 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050522-409 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-409 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190669 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0010217 (score: 1.000; bootstrap: 100%)
  • FBgn0036568 (score: 0.221)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10801-PA (score: 1.000; bootstrap: 100%)
  • GA18845-PA (score: 0.214)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000262030 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012433 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000024772 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:107801 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • P19023 (score: 1.000; bootstrap: 99%)
  • Q6I636 (score: 1.000; bootstrap: 99%)
  • Q01859 (score: 0.963)
  • Q41534 (score: 0.799)
  • O24345 (score: 0.569)
  • O24346 (score: 0.556)
  • Q5N7P9 (score: 0.451)
  • Q5N7P8 (score: 0.429)
  • P00827 (score: 0.050)
  • Q6L392 (score: 0.050)
  • Q6ENV6 (score: 0.050)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008686 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000003965 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YJR121W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC2222c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000159323 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00024822001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002478 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

ATPD

From SHIGELLACYC

E. coli O157

ATPD

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02874 ATP synthase alpha/beta family, beta-barrel domain

Pfam (EcoliWiki Page)

PF00306 ATP synthase alpha/beta chain, C terminal domain

Pfam (EcoliWiki Page)

PF00006 ATP synthase alpha/beta family, nucleotide-binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47917

Superfamily (EcoliWiki Page)

SUPERFAMILY:50615

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR15184:SF8

EcoCyc

EcoCyc:EG10101

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10101

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000097

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0099

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012208

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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