atpA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

atpA

Gene Synonym(s)

ECK3727, b3734, JW3712, papA, uncA, unc[1]

Product Desc.

ATP synthase, F1 complex, α subunit[2][3];

Component of α subunit complex[2][3]; ATP synthase, F1 complex[2][3]; ATP synthase[2][3]

ATP synthase subunit alpha, membrane-bound, F1 sector[4]

Product Synonyms(s)

F1 sector of membrane-bound ATP synthase, alpha subunit[1], B3734[2][1], Unc[2][1], UncA[2][1], PapA[2][1], AtpA[2][1] , ECK3727, JW3712, papA, uncA, b3734

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): atpBEFHAGDC[2], atpIBEFHAGDC[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Binds TrxA (Kumar, 2004). HT_Cmplx10_Mem: AtpA+AtpD+AtpG. HT_Cmplx1_Cyt: AtpA+AtpD.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

atpA

Mnemonic

ATP

Synonyms

ECK3727, b3734, JW3712, papA, uncA, unc[1]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

84.41 minutes 

MG1655: 3917880..3916339
<gbrowseImage> name=NC_000913:3916339..3917880 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3880223..3878682
<gbrowseImage> name=NC_012967:3878682..3880223 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3804672..3806213
<gbrowseImage> name=NC_012759:3804672..3806213 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3716824..3718365
<gbrowseImage> name=NC_007779:3716824..3718365 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4015464..4013923
<gbrowseImage> name=NC_010473:4013923..4015464 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3916339

Edman degradation

PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

atpAK175E

K175E

Reduced activity and reduced ATP- binding

seeded from UniProt:P0ABB0

atpAK175I

K175I

Reduced activity and loss of ATP- binding

seeded from UniProt:P0ABB0

ΔatpA (Keio:JW3712)

deletion

deletion

PMID:16738554

Shigen
CGSC10713[5]

atpA401

CGSC:9579

ΔatpA763::kan

PMID:16738554

CGSC:100134


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3712

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCAACTGAATTCCACCGAAAT

Primer 2:CCCCAGGATTGGGTTGCTTTGAA

2A1

Kohara Phage

Genobase

PMID:3038334

zid-501::Tn10

Linked marker

CAG18499 = CGSC7458[5]

est. P1 cotransduction: 16% [6]

rbsD296::Tn10

Linked marker

CAG18501 = CGSC7460[5]

est. P1 cotransduction: 62% [6]
Synonyms:zie-296::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10098

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10098

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000094

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948242

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0096

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012213

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AtpA

Synonyms

F1 sector of membrane-bound ATP synthase, alpha subunit[1], B3734[2][1], Unc[2][1], UncA[2][1], PapA[2][1], AtpA[2][1] , ECK3727, JW3712, papA, uncA, b3734

Product description

ATP synthase, F1 complex, α subunit[2][3];

Component of α subunit complex[2][3]; ATP synthase, F1 complex[2][3]; ATP synthase[2][3]

ATP synthase subunit alpha, membrane-bound, F1 sector[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0015986

ATP synthesis coupled proton transport

PMID:4256722

IMP: Inferred from Mutant Phenotype

P

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

PMID:153904

IMP: Inferred from Mutant Phenotype

C

Component of F1 ATP synthase with gene products of uncD (beta subunit), uncG (gamma subunit), uncH (delta subunit) and uncC (epsilon subunit) - for a review, see Chapter 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01346

F

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0046961

proton-transporting ATPase activity, rotational mechanism

PMID:2863270

IDA: Inferred from Direct Assay

F

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000194

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000793

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005294

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017458

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020003

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000194

F

Seeded from EcoCyc (v14.0)

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000793

F

Seeded from EcoCyc (v14.0)

complete

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020003

F

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0042777

plasma membrane ATP synthesis coupled proton transport

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01346

P

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005294

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017458

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0139

C

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01346

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005294

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017458

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018118

F

Seeded from EcoCyc (v14.0)

complete

GO:0046961

proton-transporting ATPase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005294

F

Seeded from EcoCyc (v14.0)

complete

GO:0046961

proton-transporting ATPase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017458

F

Seeded from EcoCyc (v14.0)

complete

GO:0046961

proton-transporting ATPase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018118

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of α subunit complex

could be indirect

Protein

atpD

PMID:15690043

Experiment(s):EBI-878836

Protein

rmlA1

PMID:16606699

Experiment(s):EBI-1146615

Protein

pepB

PMID:16606699

Experiment(s):EBI-1146615

Protein

glmU

PMID:16606699

Experiment(s):EBI-1146615

Protein

parE

PMID:19402753

MALDI(Z-score):24.616976

Protein

topA

PMID:19402753

MALDI(Z-score):25.391048

Protein

topB

PMID:19402753

MALDI(Z-score):28.777663

Protein

atpD

PMID:19402753

MALDI(Z-score):17.053160

Protein

Subunits of ATP synthase, F1 complex

could be indirect

Protein

Subunits of ATP synthase

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]

Cytoplasm

PMID:9298646

EchoLocation:atpA


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQLNSTEISE LIKQRIAQFN VVSEAHNEGT IVSVSDGVIR IHGLADCMQG EMISLPGNRY
AIALNLERDS VGAVVMGPYA DLAEGMKVKC TGRILEVPVG RGLLGRVVNT LGAPIDGKGP
LDHDGFSAVE AIAPGVIERQ SVDQPVQTGY KAVDSMIPIG RGQRELIIGD RQTGKTALAI
DAIINQRDSG IKCIYVAIGQ KASTISNVVR KLEEHGALAN TIVVVATASE SAALQYLAPY
AGCAMGEYFR DRGEDALIIY DDLSKQAVAY RQISLLLRRP PGREAFPGDV FYLHSRLLER
AARVNAEYVE AFTKGEVKGK TGSLTALPII ETQAGDVSAF VPTNVISITD GQIFLETNLF
NAGIRPAVNP GISVSRVGGA AQTKIMKKLS GGIRTALAQY RELAAFSQFA SDLDDATRKQ
LDHGQKVTEL LKQKQYAPMS VAQQSLVLFA AERGYLADVE LSKIGSFEAA LLAYVDRDHA
PLMQEINQTG GYNDEIEGKL KGILDSFKAT QSW
Length

513

Mol. Wt

55.222 kDa

pI

6.0 (calculated)

Extinction coefficient

29,340 - 29,840 (calc based on 16 Y, 1 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

387..488

PF00306 ATP synthase alpha/beta chain, C terminal domain

PMID:19920124

Domain

148..375

PF00006 ATP synthase alpha/beta family, nucleotide-binding domain

PMID:19920124

Domain

25..109

PF09378 HAS barrel domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atpA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131602

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948242

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012213

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ABB0

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10098

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10098

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948242

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000094

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0096

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.99E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

369.139+/-2.367

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.19653+/-0.0126

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

1.274172615

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

820

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M87

PMID: 9298646

Protein

E. coli K-12 MG1655

30696

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

9565

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

18916

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

atpBEFHAGDC

atpIBEFHAGDC

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3917860..3917900 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3734 (EcoliWiki Page)

NCBI GEO profiles for atpA

microarray

GenExpDB:b3734 (EcoliWiki Page)

Summary of data for atpA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to atpA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10098

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0096

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3734

EcoGene

EcoGene:EG10098

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000094

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012213

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024604 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000013621 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G07698 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003259 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030462 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010419 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026032 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000011624 (score: 0.497)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000013107 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201592 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0011211 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17558-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000002695 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000282050 (score: 1.000; bootstrap: 100%)
  • ENSP00000322305 (score: 0.355)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000004753 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003948 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:88115 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q7JAI5 (score: 1.000; bootstrap: 100%)
  • P15998 (score: 0.978)
  • Q67TM4 (score: 0.959)
  • Q40377 (score: 0.932)
  • Q36567 (score: 0.932)
  • Q6R987 (score: 0.924)
  • P05494 (score: 0.924)
  • P12862 (score: 0.924)
  • Q9MDQ1 (score: 0.705)
  • Q8HFC0 (score: 0.596)
  • Q8HFC1 (score: 0.592)
  • Q8HFB9 (score: 0.587)
  • Q8HFC2 (score: 0.517)
  • Q66UU1 (score: 0.068)
  • Q6ENW6 (score: 0.057)
  • Q7DNB0 (score: 0.057)
  • Q6QY77 (score: 0.057)
  • Q6QY13 (score: 0.057)
  • Q6L3A1 (score: 0.057)
  • P12084 (score: 0.057)
  • Q6ENH7 (score: 0.057)
  • Q8S7T5 (score: 0.055)
  • P12112 (score: 0.055)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000016989 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000014233 (score: 0.349)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022892 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBL099W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC14C44 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000162803 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000162702 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00013477001 (score: 1.000; bootstrap: 100%)
  • GSTENP00030934001 (score: 0.765)

From Inparanoid:20070104

Shigella flexneri

ATPA

From SHIGELLACYC

E. coli O157

ATPA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00306 ATP synthase alpha/beta chain, C terminal domain

Pfam (EcoliWiki Page)

PF00006 ATP synthase alpha/beta family, nucleotide-binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47917

Superfamily (EcoliWiki Page)

SUPERFAMILY:50615

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR15184:SF3

Pfam (EcoliWiki Page)

PF09378 HAS barrel domain

EcoCyc

EcoCyc:EG10098

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10098

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000094

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0096

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012213

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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