gpsA:On One Page

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Standard Name

gpsA

Gene Synonym(s)

ECK3598, b3608, JW3583[1], JW3583

Product Desc.

GpsA[2][3];

Component of [[:Category:Complex:glycerol-3-phosphate-dehydrogenase-[NAD+]|glycerol-3-phosphate-dehydrogenase-[NAD+]]][2][3]

Product Synonyms(s)

glycerol-3-phosphate dehydrogenase (NAD+)[1], B3608[2][1], GpsA[2][1] , ECK3598, JW3583, b3608

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gpsA[2]

Regulation/Activity
Quick Links



        

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

gpsA

Mnemonic

Glycerol phosphate

Synonyms

ECK3598, b3608, JW3583[1], JW3583

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

81.49 minutes 

MG1655: 3781684..3780665
<gbrowseImage> name=NC_000913:3780665..3781684 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3724427..3723408
<gbrowseImage> name=NC_012967:3723408..3724427 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3668991..3670010
<gbrowseImage> name=NC_012759:3668991..3670010 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3856754..3857773
<gbrowseImage> name=NC_007779:3856754..3857773 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3879261..3878242
<gbrowseImage> name=NC_010473:3878242..3879261 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

gpsA::Tn5KAN-I-SceI (FB21340)

Insertion at nt 476 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21340

contains pKD46

gpsA20

CGSC:8928


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3583

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAACCAACGTAATGCTTCAAT

Primer 2:CCGTGGCTGCTGCGCTCGTCCTT

5D2

Kohara Phage

Genobase

PMID:3038334

zhg-50::Tn10

Linked marker

CAG18450 = CGSC7450[4]

est. P1 cotransduction: % [5]
Synonyms:zhf-50::Tn10, zhf-5::Tn10

zic-4901::Tn10

Linked marker

CAG18492 = CGSC7457[4]

est. P1 cotransduction: 12% [5]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG20091

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20091

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002442

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948125

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4142

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011795

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GpsA

Synonyms

glycerol-3-phosphate dehydrogenase (NAD+)[1], B3608[2][1], GpsA[2][1] , ECK3598, JW3583, b3608

Product description

GpsA[2][3];

Component of [[:Category:Complex:glycerol-3-phosphate-dehydrogenase-[NAD+]|glycerol-3-phosphate-dehydrogenase-[NAD+]]][2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc (v14.0)

complete

GO:0004367

glycerol-3-phosphate dehydrogenase (NAD+) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006168

F

Seeded from EcoCyc (v14.0)

complete

GO:0005488

binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00394

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011128

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006109

P

Seeded from EcoCyc (v14.0)

complete

GO:0006072

glycerol-3-phosphate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006168

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

P

Seeded from EcoCyc (v14.0)

complete

GO:0008654

phospholipid biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00394

P

Seeded from EcoCyc (v14.0)

complete

GO:0008654

phospholipid biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0594

P

Seeded from EcoCyc (v14.0)

complete

GO:0009331

glycerol-3-phosphate dehydrogenase complex

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006168

C

Seeded from EcoCyc (v14.0)

complete

GO:0016614

oxidoreductase activity, acting on CH-OH group of donors

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006109

F

Seeded from EcoCyc (v14.0)

complete

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011128

F

Seeded from EcoCyc (v14.0)

complete

GO:0046474

glycerophospholipid biosynthetic process

PMID:4597451[6]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0046167

glycerol-3-phosphate biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00394

P

Seeded from EcoCyc (v14.0)

complete

GO:0047952

glycerol-3-phosphate dehydrogenase (NAD(P)+) activity

PMID:4597451[6]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0046168

glycerol-3-phosphate catabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011128

P

Seeded from EcoCyc (v14.0)

complete

GO:0047952

glycerol-3-phosphate dehydrogenase (NAD(P)+) activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00394

F

Seeded from EcoCyc (v14.0)

complete

GO:0047952

glycerol-3-phosphate dehydrogenase (NAD(P)+) activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.1.1.94

F

Seeded from EcoCyc (v14.0)

complete

GO:0050662

coenzyme binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013328

F

Seeded from EcoCyc (v14.0)

complete

GO:0051287

NAD or NADH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011128

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006109

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006168

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011128

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of [[:Category:Complex:glycerol-3-phosphate-dehydrogenase-[NAD+]|glycerol-3-phosphate-dehydrogenase-[NAD+]]]

could be indirect

Protein

cadA

PMID:16606699[7]

Experiment(s):EBI-1146237

Protein

ahpC

PMID:16606699[7]

Experiment(s):EBI-1146237

Protein

rho

PMID:16606699[7]

Experiment(s):EBI-1146237

Protein

speG

PMID:16606699[7]

Experiment(s):EBI-1146237

Protein

nadE

PMID:16606699[7]

Experiment(s):EBI-1146237

Protein

rpsA

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rplW

PMID:19402753[8]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNQRNASMTV IGAGSYGTAL AITLARNGHE VVLWGHDPEH IATLERDRCN AAFLPDVPFP
DTLHLESDLA TALAASRNIL VVVPSHVFGE VLRQIKPLMR PDARLVWATK GLEAETGRLL
QDVAREALGD QIPLAVISGP TFAKELAAGL PTAISLASTD QTFADDLQQL LHCGKSFRVY
SNPDFIGVQL GGAVKNVIAI GAGMSDGIGF GANARTALIT RGLAEMSRLG AALGADPATF
MGMAGLGDLV LTCTDNQSRN RRFGMMLGQG MDVQSAQEKI GQVVEGYRNT KEVRELAHRF
GVEMPITEEI YQVLYCGKNA REAALTLLGR ARKDERSSH
Length

339

Mol. Wt

36.361 kDa

pI

6.5 (calculated)

Extinction coefficient

18,450 - 18,950 (calc based on 5 Y, 2 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

6..165

PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

PMID:19920124[9]

Domain

183..327

PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

PMID:19920124[9]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=gpsA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131479

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948125

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011795

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6S7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG20091

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20091

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948125

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002442

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4142

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.86E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

26.034+/-0.229

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.158488714

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

1471

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

355

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

602

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

gpsA

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Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<gbrowseImage> name=NC_000913:3781664..3781704 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3608 (EcoliWiki Page)

NCBI GEO profiles for gpsA

microarray

GenExpDB:b3608 (EcoliWiki Page)

Summary of data for gpsA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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<protect>

Notes

Accessions Related to gpsA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG20091

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4142

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3608

EcoGene

EcoGene:EG20091

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002442

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011795

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000002204 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017679 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G40690 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000021683 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000023610 (score: 0.684)
  • ENSBTAP00000012955 (score: 0.321)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038184 (score: 1.000; bootstrap: 100%)
  • WBGene00031452 (score: 0.436)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009824 (score: 1.000; bootstrap: 100%)
  • WBGene00010778 (score: 0.444)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000012187 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000008053 (score: 0.576)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014267 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2576 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3523 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1262 (score: 0.721)
  • ZDB-CDNA-040425-1263 (score: 0.721)
  • ZDB-GENE-030131-3906 (score: 0.721)
  • ZDB-CDNA-050417-210 (score: 0.693)
  • ZDB-GENE-050417-209 (score: 0.693)
  • ZDB-CDNA-041010-220 (score: 0.676)
  • ZDB-GENE-041010-220 (score: 0.676)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001128 (score: 1.000; bootstrap: 100%)
  • FBgn0034825 (score: 0.480)
  • FBgn0051169 (score: 0.377)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16715-PA (score: 1.000; bootstrap: 100%)
  • GA16060-PA (score: 0.273)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000019678 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000018695 (score: 0.745)
  • ENSGALP00000028211 (score: 0.381)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000301149 (score: 1.000; bootstrap: 100%)
  • ENSP00000282541 (score: 0.698)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008603 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000025883 (score: 0.703)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022926 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018971 (score: 0.111)

From Inparanoid:20070104

Mus musculus

  • MGI:95679 (score: 1.000; bootstrap: 100%)
  • MGI:1289257 (score: 0.699)
  • MGI:1919502 (score: 0.607)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008412 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000025382 (score: 0.293)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026200 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000036106 (score: 0.715)
  • ENSRNOP00000033802 (score: 0.610)
  • ENSRNOP00000006506 (score: 0.494)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOL059W (score: 1.000; bootstrap: 100%)
  • YDL022W (score: 0.614)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC2155 (score: 1.000; bootstrap: 100%)
  • SPAC23D34c (score: 0.514)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134996 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000173703 (score: 0.786)
  • NEWSINFRUP00000154494 (score: 0.649)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020090001 (score: 1.000; bootstrap: 100%)
  • GSTENP00023665001 (score: 0.674)
  • GSTENP00033849001 (score: 0.486)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000039939 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Shigella flexneri

GPSA

From SHIGELLACYC

E. coli O157

GPSA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR11728:SF0

Pfam (EcoliWiki Page)

PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

EcoCyc

EcoCyc:EG20091

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20091

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002442

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4142

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011795

Escherichia coli str. K-12 substr. MG1655

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Notes

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  6. ↑ 6.0 6.1 Cronan, JE Jr & Bell, RM (1974) Mutants of Escherichia coli defective in membrane phospholipid synthesis: mapping of the structural gene for L-glycerol 3-phosphate dehydrogenase. J. Bacteriol. 118 598-605 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 7.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ 9.0 9.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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