recB:Gene: Difference between revisions
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''ECK2816, b2820, JW2788, rorA, ior''<ref name='LIB:Riley_2006'/> | ''ECK2816, b2820, JW2788, rorA, ior''<ref name='LIB:Riley_2006'/>, ior'' | ||
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!|Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | |||
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10824 ECOCYC:EG10824] | |||
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Escherichia coli str. K-12 substr. MG1655 | |||
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]]) | |||
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[http://ecogene.org/geneinfo.php?eg_id=EG10824 EcoGene:EG10824] | |||
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Escherichia coli str. K-12 substr. MG1655 | |||
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]]) | |||
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[http://www.ncbi.nlm.nih.gov/gene?term=947286 GeneID:947286] | |||
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Escherichia coli str. K-12 substr. MG1655 | |||
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Revision as of 18:37, 24 September 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
recB |
|---|---|
| Mnemonic |
Recombination |
| Synonyms |
ECK2816, b2820, JW2788, rorA, ior[1], ior |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
63.59 minutes |
MG1655: 2954025..2950483 |
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NC_012967: 2850622..2847080 |
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NC_012759: 2837631..2841173 |
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W3110 |
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W3110: 2954659..2951117 |
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DH10B: 3047895..3044353 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
2950486 |
Edman degradation |
| ||
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔrecB (Keio:JW2788) |
deletion |
deletion |
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recB::Tn5KAN-I-SceI (FB20945) |
Insertion at nt 2423 in Minus orientation |
contains pKD46 | |||||
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recB::Tn5KAN-I-SceI (FB20946) |
Insertion at nt 2423 in Minus orientation |
does not contain pKD46 | |||||
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recB21 |
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recB270(ts) |
temperature sensitive |
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recB1067(D1067A) |
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recB1080(D1080A) |
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recB1082(K1082Q) |
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recB60 |
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ΔrecB745::kan |
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recB(del) in MDS42 |
Sensitivity to |
increases sensitivity to bicyclomycin |
fig. 2 | ||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW2788 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAGTGATGTCGCCGAGACACT Primer 2:CCgGCCTCCTCCAGGGTCATACC | |
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Kohara Phage |
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Kohara Phage |
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|
Linked marker |
est. P1 cotransduction: 52% [11] | ||
|
Linked marker |
est. P1 cotransduction: 99% [11] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Masterson, C et al. (1992) Reconstitution of the activities of the RecBCD holoenzyme of Escherichia coli from the purified subunits. J. Biol. Chem. 267 13564-72 PubMed
- ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
- ↑ 5.0 5.1 Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ 6.0 6.1 Yu, M et al. (1998) Identification of the nuclease active site in the multifunctional RecBCD enzyme by creation of a chimeric enzyme. J. Mol. Biol. 283 797-808 PubMed
- ↑ Jockovich, ME & Myers, RS (2001) Nuclease activity is essential for RecBCD recombination in Escherichia coli. Mol. Microbiol. 41 949-62 PubMed
- ↑ Washburn, RS & Gottesman, ME (2011) Transcription termination maintains chromosome integrity. Proc. Natl. Acad. Sci. U.S.A. 108 792-7 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 10.0 10.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 11.0 11.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).