nusA:Gene: Difference between revisions
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Primer 2:CCgGCTTCGTCACCGAACCAGCA | Primer 2:CCgGCTTCGTCACCGAACCAGCA | ||
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[[:Category:Kohara_Phage:E4G11S|E4G11S]] | |||
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Kohara Phage | |||
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=519 Genobase] | |||
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PMID:3038334 | |||
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[[:Category:Kohara_Phage: | [[:Category:Kohara_Phage:18H7|18H7]] | ||
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Kohara Phage | Kohara Phage | ||
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword= | [http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=520 Genobase] | ||
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PMID:3038334 | PMID:3038334 | ||
Revision as of 21:20, 2 September 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
nusA |
|---|---|
| Mnemonic |
N (phage lambda protein) utilization substance |
| Synonyms |
ECK3158, b3169, JW3138[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
71.43 minutes |
MG1655: 3315548..3314061 |
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NC_012967: 3252760..3251273 |
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NC_012759: 3201209..3202696 |
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|
W3110 |
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W3110: 3317381..3315894 |
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DH10B: 3413293..3411806 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
3314061 |
Edman degradation |
| ||
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
nusA::Tn5KAN-I-SceI (FB21054) |
Insertion at nt 1250 in Plus orientation |
contains pKD46 | |||||
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nusAG181D |
G181D |
In nusa11; inability to terminate transcription normally at termination sites |
seeded from UniProt:P0AFF6 | ||||
|
nusAL183R |
L183R |
In nusA1; restricts lambda growth by preventing antitermination activity of lambda N protein |
seeded from UniProt:P0AFF6 | ||||
|
nusAE212K |
E212K |
In nusA10-1 |
seeded from UniProt:P0AFF6 | ||||
|
nusAR104H |
R104H |
In nusA10-1 |
seeded from UniProt:P0AFF6 | ||||
|
nusA1 |
| ||||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW3138 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAACAAAGAAATTTTGGCTGT Primer 2:CCgGCTTCGTCACCGAACCAGCA | |
|
Kohara Phage |
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|
Linked marker |
est. P1 cotransduction: % [9] | ||
|
Linked marker |
est. P1 cotransduction: 54% [9] | ||
|
Kohara Phage |
|||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
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| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Ito, K et al. (1991) Genetic interaction between the beta' subunit of RNA polymerase and the arginine-rich domain of Escherichia coli nusA protein. J. Bacteriol. 173 1492-501 PubMed
- ↑ Ishii, S et al. (1984) tRNAMetf2 gene in the leader region of the nusA operon in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 81 409-13 PubMed
- ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
- ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 7.0 7.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 8.0 8.1 CGSC: The Coli Genetics Stock Center
- ↑ 9.0 9.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).