proC:Gene: Difference between revisions
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'' | ''ΔproC751::kan'' | ||
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deletion | |||
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deletion | |||
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Auxotrophies | |||
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Requires proline for growth | |||
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PMID:16738554 | PMID:16738554 | ||
Revision as of 15:43, 24 January 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
proC |
|---|---|
| Mnemonic |
Proline |
| Synonyms |
ECK0381, b0386, JW0377, pro2, pro3, pro(3)[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
8.71 minutes |
MG1655: 404868..404059 |
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NC_012967: 373290..372481 |
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NC_012759: 306818..307627 |
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|
W3110 |
|
W3110: 404868..404059 |
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|
DH10B: 344199..343390 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
404059 |
Edman degradation |
| ||
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔproC (Keio:JW0377) |
deletion |
deletion |
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proC14 |
Auxotrophies |
Requires proline for growth |
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proC32 |
Auxotrophies |
Requires proline for growth |
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proC47 |
Auxotrophies |
Requires proline for growth |
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proC34 |
Auxotrophies |
Requires proline for growth |
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proC24 |
Auxotrophies |
Requires proline for growth |
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proC55 |
Auxotrophies |
Requires proline for growth |
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proC83 |
Auxotrophies |
Requires proline for growth |
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proC43 |
Auxotrophies |
Requires proline for growth |
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proC29 |
Auxotrophies |
Requires proline for growth |
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proC9999 |
Auxotrophies |
Requires proline for growth |
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proC677(tetR)::Tn5-132 |
Auxotrophies |
Requires proline for growth |
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proC471::Tn5 |
Auxotrophies |
Requires proline for growth |
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ΔproC751::kan |
deletion |
deletion |
Auxotrophies |
Requires proline for growth |
| ||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0377 |
Plasmid clone |
Status:Clone OK Primer 1:GCCGAAAAGAAAATCGGTTTTAT Primer 2:CCGGATTTGCTGAGTTTTTCTGA | |
|
Linked marker |
est. P1 cotransduction: 72% [6] | ||
|
Linked marker |
est. P1 cotransduction: 35% [6] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Deutch, AH et al. (1984) Analysis of the Escherichia coli proBA locus by DNA and protein sequencing. Nucleic Acids Res. 12 6337-55 PubMed
- ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).