uvrB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

uvrB

Gene Synonym(s)

ECK0768, b0779, JW0762, dar-1, dar-6, visB[1][2]

Product Desc.

DNA repair; excision nuclease subunit B[2][3];

Component of UvrABC Nucleotide Excision Repair Complex[2][3]

Excision nuclease subunit B, ATPase I and helicase II; repair of UV damage to DNA[4]

Product Synonyms(s)

excinulease of nucleotide excision repair, DNA damage recognition component[1], B0779[2][1], VisB[2][1], UvrB[2][1] , dar-1, dar-6, ECK0768, JW0762, b0779

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): uvrB[2], OP00098

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

uvrB

Mnemonic

UV resistant

Synonyms

ECK0768, b0779, JW0762, dar-1, dar-6, visB[1][2]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

17.52 minutes 

MG1655: 812749..814770
<gbrowseImage> name=NC_000913:812749..814770 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 806152..808173
<gbrowseImage> name=NC_012967:806152..808173 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 715717..717738
<gbrowseImage> name=NC_012759:715717..717738 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 813948..815969
<gbrowseImage> name=NC_007779:813948..815969 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 866677..868698
<gbrowseImage> name=NC_010473:866677..868698 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

812752

Edman degradation

PMID:3515321


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

uvrB(del) (Keio:JW0762)

deletion

deletion

PMID:16738554

Shigen

CGSC8819[5]

uvrBY95+Y96

Y95A and Y96A

Altered enzymatic activity

Defective in DNA-unwinding activity

PMID:11689453

seeded from UniProt:P0A8F8

uvrBY101+F108

Y101A and F108A

Altered enzyme activity

Defective in DNA-unwinding activity

PMID:11689453

seeded from UniProt:P0A8F8

uvrB45

Sensitivity to

Mutant increases in sensitivity after high UV-radiation exposure

PMID:5335128

CGSC:9252

Figure 5

Strain: Hfr Hayes

uvrB16

CGSC:9285

uvrB5

PMID:6224549

CGSC:9287

uvrB27

CGSC:9324

uvrB29

CGSC:9326

uvrB30

CGSC:9328

uvrB501

CGSC:11315

uvrB151

CGSC:11965

uvrB153

CGSC:14433

uvrB230

CGSC:15657

uvrB751(del)::kan

PMID:16738554

CGSC:103344

uvrB5

deletion

deletion

Sensitivity to

Deletion of uvrB caused hypersensitivity to PUVA (UVA-A light) treatments performed with both mono-functional 3-carbethoxypsoralen and bifunctional 8-Monofunctional psoralens when compared to wildtype, figure 1 & 2.

PMID:20004108

parent strain: AB1157

uvrB(del)

Deletion

Deletion

Sensitivity to

Gene deletion enhances SOS chromatest assay sensitivity for nitroreductases which can be used for CB1954-mediated gene therapy.

PMID:20727918

uvrB301(del)

complete null mutant

complete null mutant

Sensitivity to

Deletion mutants are more sensitive to DNA damaging agent Mitomycin C,

PMID:17040104

Experimental strain: JC3890

Figures 1 & 2 illustrate experimental results.

uvrB5

point mutation

Sensitivity to

truncation mutation was more sensitive to lower mitomycin C concentrations than complete null mutation, uvrB301(del),

PMID:17040104

CGSC

See figure 2 for full experimental results.

uvrB(del)

deletion

deletion

Sensitivity to

Deletion mutation causes hypersensitive to UV when irradiated and incubated in non-photoreactivating conditions, fig 2.

PMID:16970815

uvrB5

point mutation

DNA repair

truncation mutation resulted in increasing amounts of DNA strand breaks.

PMID:17040104

CGSC

See figure 4 for results.

uvrBK45A

Lysine to alanine

change in enzyme activity

ATP hydrolysis by uvrB is inhibited.

PMID:17630776

Table 1.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0762

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGTAAACCGTTCAAACTGAA

Primer 2:CCCGATGCCGCGATAAACAGCTC

4H7

Kohara Phage

Genobase

PMID:3038334

3D4

Kohara Phage

Genobase

PMID:3038334

24F9

Kohara Phage

Genobase

PMID:3038334

nadA57::Tn10

Linked marker

CAG12147 = CGSC7351[5]

est. P1 cotransduction: 26% [6]

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[5]

est. P1 cotransduction: 75% [6]
Synonyms:zbi-29::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11062

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11062

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001051

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945385

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1055

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002658

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

UvrB

Synonyms

excinulease of nucleotide excision repair, DNA damage recognition component[1], B0779[2][1], VisB[2][1], UvrB[2][1] , dar-1, dar-6, ECK0768, JW0762, b0779

Product description

DNA repair; excision nuclease subunit B[2][3];

Component of UvrABC Nucleotide Excision Repair Complex[2][3]

Excision nuclease subunit B, ATPase I and helicase II; repair of UV damage to DNA[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00204

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001943

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004807

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006935

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009055

F

Seeded from EcoCyc (v14.0)

complete

GO:0004386

helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0004518

nuclease activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001943

F

Seeded from EcoCyc (v14.0)

complete

GO:0004518

nuclease activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009055

F

Seeded from EcoCyc (v14.0)

complete

GO:0004518

nuclease activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0267

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00204

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004807

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006935

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00204

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00204

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004807

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0228

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0234

P

Seeded from EcoCyc (v14.0)

complete

GO:0006289

nucleotide-excision repair

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00204

P

Seeded from EcoCyc (v14.0)

complete

GO:0006289

nucleotide-excision repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001943

P

Seeded from EcoCyc (v14.0)

complete

GO:0006289

nucleotide-excision repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004807

P

Seeded from EcoCyc (v14.0)

complete

GO:0006289

nucleotide-excision repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009055

P

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc (v14.0)

complete

GO:0009381

excinuclease ABC activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00204

F

Seeded from EcoCyc (v14.0)

complete

GO:0009381

excinuclease ABC activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004807

F

Seeded from EcoCyc (v14.0)

complete

GO:0009432

SOS response

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00204

P

Seeded from EcoCyc (v14.0)

complete

GO:0009432

SOS response

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004807

P

Seeded from EcoCyc (v14.0)

complete

GO:0009432

SOS response

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0742

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006935

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of UvrABC Nucleotide Excision Repair Complex

could be indirect

Protein

aceF

PMID:15690043

Experiment(s):EBI-880948, EBI-887304

Protein

lpdA

PMID:15690043

Experiment(s):EBI-880948, EBI-887304

Protein

garK

PMID:15690043

Experiment(s):EBI-880948

Protein

hns

PMID:15690043

Experiment(s):EBI-887304

Protein

hupA

PMID:15690043

Experiment(s):EBI-887304

Protein

hupB

PMID:15690043

Experiment(s):EBI-887304

Protein

nfi

PMID:15690043

Experiment(s):EBI-887304

Protein

rpmB

PMID:15690043

Experiment(s):EBI-887304

Protein

hns

PMID:19402753

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753

LCMS(ID Probability):99.6

Protein

hupB

PMID:19402753

LCMS(ID Probability):99.6

Protein

nfi

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSKPFKLNSA FKPSGDQPEA IRRLEEGLED GLAHQTLLGV TGSGKTFTIA NVIADLQRPT
MVLAPNKTLA AQLYGEMKEF FPENAVEYFV SYYDYYQPEA YVPSSDTFIE KDASVNEHIE
QMRLSATKAM LERRDVVVVA SVSAIYGLGD PDLYLKMMLH LTVGMIIDQR AILRRLAELQ
YARNDQAFQR GTFRVRGEVI DIFPAESDDI ALRVELFDEE VERLSLFDPL TGQIVSTIPR
FTIYPKTHYV TPRERIVQAM EEIKEELAAR RKVLLENNKL LEEQRLTQRT QFDLEMMNEL
GYCSGIENYS RFLSGRGPGE PPPTLFDYLP ADGLLVVDES HVTIPQIGGM YRGDRARKET
LVEYGFRLPS ALDNRPLKFE EFEALAPQTI YVSATPGNYE LEKSGGDVVD QVVRPTGLLD
PIIEVRPVAT QVDDLLSEIR QRAAINERVL VTTLTKRMAE DLTEYLEEHG ERVRYLHSDI
DTVERMEIIR DLRLGEFDVL VGINLLREGL DMPEVSLVAI LDADKEGFLR SERSLIQTIG
RAARNVNGKA ILYGDKITPS MAKAIGETER RREKQQKYNE EHGITPQGLN KKVVDILALG
QNIAKTKAKG RGKSRPIVEP DNVPMDMSPK ALQQKIHELE GLMMQHAQNL EFEEAAQIRD
QLHQLRELFI AAS
Length

673

Mol. Wt

76.227 kDa

pI

5.0 (calculated)

Extinction coefficient

34,270 - 34,395 (calc based on 23 Y, 0 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A8F8

Domain

464..546

PF00271 Helicase conserved C-terminal domain

PMID:19920124

Domain

633..668

PF02151 UvrB/uvrC motif

PMID:19920124

Domain

10..134

PF04851 Type III restriction enzyme, res subunit

PMID:19920124

Domain

552..595

PF12344 Ultra-violet resistance protein B

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=uvrB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128747

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945385

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002658

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A8F8

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11062

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11062

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945385

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001051

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1055

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

11.53+/-0.084

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.036615537

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

370

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

197

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

292

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

uvrB

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:812729..812769 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0779 (EcoliWiki Page)

NCBI GEO profiles for uvrB

microarray

GenExpDB:b0779 (EcoliWiki Page)

Summary of data for uvrB from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to uvrB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11062

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1055

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0779

EcoGene

EcoGene:EG11062

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001051

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002658

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Shigella flexneri

UVRB

From SHIGELLACYC

E. coli O157

UVRB

From ECOO157CYC

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Notes

Families

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Database Accession Notes

Pfam (EcoliWiki Page)

PF00271 Helicase conserved C-terminal domain

Pfam (EcoliWiki Page)

PF02151 UvrB/uvrC motif

Superfamily (EcoliWiki Page)

SUPERFAMILY:46600

Panther (EcoliWiki Page)

PTHR24029:SF65

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Pfam (EcoliWiki Page)

PF04851 Type III restriction enzyme, res subunit

Pfam (EcoliWiki Page)

PF12344 Ultra-violet resistance protein B

EcoCyc

EcoCyc:EG11062

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11062

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001051

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1055

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002658

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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