tig:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

tig

Gene Synonym(s)

ECK0430, b0436, JW0426[1], JW0426

Product Desc.

trigger factor; a molecular chaperone involved in cell division[2][3]

Trigger factor, protein folding chaperone; also peptidyl-prolyl cis-trans isomerase; interacts with nascent polypeptide chains[4]

Product Synonyms(s)

peptidyl-prolyl cis/trans isomerase (trigger factor)[1], B0436[2][1], Tig[2][1] , ECK0430, JW0426, b0436

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tig[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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dnaK and tig mutants are synthetic lethal at 30 degrees C, however, no lethal effects are observed at 23 degrees C. Overproduction of GroEL/GroES at 30 degrees C supresses synthetic lethality.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

tig

Mnemonic

Trigger factor

Synonyms

ECK0430, b0436, JW0426[1], JW0426

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

9.79 minutes 

MG1655: 454357..455655
<gbrowseImage> name=NC_000913:454357..455655 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 425838..427136
<gbrowseImage> name=NC_012967:425838..427136 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 357116..358414
<gbrowseImage> name=NC_012759:357116..358414 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 454357..455655
<gbrowseImage> name=NC_007779:454357..455655 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 393688..394986
<gbrowseImage> name=NC_010473:393688..394986 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

454357

Edman degradation

PMID:2211496
PMID:2843289
PMID:9298646
PMID:9600841
PMID:9868784


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

tig(del) (Keio:JW0426)

deletion

deletion

PMID:16738554

Shigen

CGSC8589[5]

tigFRK44AAA

FRK44AAA

Decreases association with ribosomes

seeded from UniProt:P0A850

tig-722(del)::kan

PMID:16738554

CGSC:103156


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0426

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCAAGTTTCAGTTGAAACCAC

Primer 2:CCCGCCTGCTGGTTCATCAGCTC

2H5

Kohara Phage

Genobase

PMID:3038334

3B6

Kohara Phage

Genobase

PMID:3038334

tsx-247::Tn10

Linked marker

CAG12148 = CGSC7337[5]

est. P1 cotransduction: 43% [6]

zaj-3054::Tn10

Linked marker

CAG12017 = CGSC7339[5]

est. P1 cotransduction: 85% [6]
Synonyms:zba-3054::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11003

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11003

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000992

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945081

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0996

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001511

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Tig

Synonyms

peptidyl-prolyl cis/trans isomerase (trigger factor)[1], B0436[2][1], Tig[2][1] , ECK0430, JW0426, b0436

Product description

trigger factor; a molecular chaperone involved in cell division[2][3]

Trigger factor, protein folding chaperone; also peptidyl-prolyl cis-trans isomerase; interacts with nascent polypeptide chains[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00303

F

Seeded from EcoCyc (v14.0)

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

F

Seeded from EcoCyc (v14.0)

complete

I need a term for prolyl isomerase

Missing: GO ID, evidence, reference

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

PMID:8633085

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0007049

cell cycle

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0131

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00303

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005215

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008880

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008881

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0044444

cytoplasmic part

PMID:9009267

TAS: Traceable Author Statement

C

Seeded from EcoCyc (v14.0)

complete

GO:0051083

'de novo' cotranslational protein folding

PMID:8633085

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc (v14.0)

complete

GO:0051301

cell division

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0132

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aspA

PMID:15690043

Experiment(s):EBI-895036

Protein

yneI

PMID:15690043

Experiment(s):EBI-895036

Protein

yniB

PMID:15690043

Experiment(s):EBI-895036

Protein

lysA

PMID:15690043

Experiment(s):EBI-895036

Protein

rplC

PMID:15690043

Experiment(s):EBI-895036

Protein

rplD

PMID:15690043

Experiment(s):EBI-895036

Protein

rplW

PMID:15690043

Experiment(s):EBI-895036

Protein

rpmB

PMID:15690043

Experiment(s):EBI-895036

Protein

rpmC

PMID:15690043

Experiment(s):EBI-895036

Protein

rpsA

PMID:15690043

Experiment(s):EBI-895036

Protein

rpsB

PMID:15690043

Experiment(s):EBI-895036

Protein

rpsE

PMID:15690043

Experiment(s):EBI-895036

Protein

rpsG

PMID:15690043

Experiment(s):EBI-895036

Protein

tdcA

PMID:15690043

Experiment(s):EBI-895036

Protein

yfiP

PMID:15690043

Experiment(s):EBI-895036

Protein

ade

PMID:15690043

Experiment(s):EBI-895036

Protein

gltJ

PMID:15690043

Experiment(s):EBI-895036

Protein

rpoC

PMID:16606699

Experiment(s):EBI-1136591

Protein

ompA

PMID:16606699

Experiment(s):EBI-1136591

Protein

rplF

PMID:16606699

Experiment(s):EBI-1136591

Protein

sdhB

PMID:16606699

Experiment(s):EBI-1136591

Protein

ycgL

PMID:16606699

Experiment(s):EBI-1136591

Protein

narZ

PMID:16606699

Experiment(s):EBI-1136591

Protein

hflB

PMID:16606699

Experiment(s):EBI-1136591

Protein

putA

PMID:16606699

Experiment(s):EBI-1136591

Protein

rpsC

PMID:16606699

Experiment(s):EBI-1136591

Protein

fadB

PMID:16606699

Experiment(s):EBI-1136591

Protein

gapA

PMID:16606699

Experiment(s):EBI-1136591

Protein

adk

PMID:16606699

Experiment(s):EBI-1136591

Protein

pflB

PMID:16606699

Experiment(s):EBI-1136591

Protein

rpsI

PMID:16606699

Experiment(s):EBI-1136591

Protein

rhsD

PMID:16606699

Experiment(s):EBI-1136591

Protein

ppsA

PMID:16606699

Experiment(s):EBI-1136591

Protein

rpoB

PMID:16606699

Experiment(s):EBI-1136591

Protein

slyD

PMID:16606699

Experiment(s):EBI-1136591

Protein

ompF

PMID:16606699

Experiment(s):EBI-1136591

Protein

rpsE

PMID:16606699

Experiment(s):EBI-1136591

Protein

rpsU

PMID:16606699

Experiment(s):EBI-1136591

Protein

rspA

PMID:16606699

Experiment(s):EBI-1136591

Protein

narY

PMID:16606699

Experiment(s):EBI-1136591

Protein

yfaS

PMID:16606699

Experiment(s):EBI-1136591

Protein

sdhA

PMID:16606699

Experiment(s):EBI-1136591

Protein

htpG

PMID:16606699

Experiment(s):EBI-1136591

Protein

lacZ

PMID:16606699

Experiment(s):EBI-1136591

Protein

rplN

PMID:16606699

Experiment(s):EBI-1136591

Protein

aceE

PMID:16606699

Experiment(s):EBI-1136591

Protein

nadE

PMID:16606699

Experiment(s):EBI-1136591

Protein

fliT

PMID:16606699

Experiment(s):EBI-1136591

Protein

rpsD

PMID:16606699

Experiment(s):EBI-1136591

Protein

rhsC

PMID:16606699

Experiment(s):EBI-1136591

Protein

rpmB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpmC

PMID:19402753

LCMS(ID Probability):99.0

Protein

rpsA

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQVSVETTQG LGRRVTITIA ADSIETAVKS ELVNVAKKVR IDGFRKGKVP MNIVAQRYGA
SVRQDVLGDL MSRNFIDAII KEKINPAGAP TYVPGEYKLG EDFTYSVEFE VYPEVELQGL
EAIEVEKPIV EVTDADVDGM LDTLRKQQAT WKEKDGAVEA EDRVTIDFTG SVDGEEFEGG
KASDFVLAMG QGRMIPGFED GIKGHKAGEE FTIDVTFPEE YHAENLKGKA AKFAINLKKV
EERELPELTA EFIKRFGVED GSVEGLRAEV RKNMERELKS AIRNRVKSQA IEGLVKANDI
DVPAALIDSE IDVLRRQAAQ RFGGNEKQAL ELPRELFEEQ AKRRVVVGLL LGEVIRTNEL
KADEERVKGL IEEMASAYED PKEVIEFYSK NKELMDNMRN VALEEQAVEA VLAKAKVTEK
ETTFNELMNQ QA
Length

432

Mol. Wt

48.192 kDa

pI

4.7 (calculated)

Extinction coefficient

17,420 (calc based on 8 Y, 1 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

152..238

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

PMID:19920124

Domain

1..145

PF05697 Bacterial trigger factor protein (TF)

PMID:19920124

Domain

262..413

PF05698 Bacterial trigger factor protein (TF) C-terminus

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=tig taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128421

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945081

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001511

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A850

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11003

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11003

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945081

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000992

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0996

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

3.12E+04

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

729.704+/-3.485

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.38386+/-0.01451

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

1.011171032

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

1070

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M4

PMID: 9298646

Protein

E. coli K-12 MG1655

69639

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

13128

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

40097

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

tig

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:454337..454377 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0436 (EcoliWiki Page)

NCBI GEO profiles for tig

microarray

GenExpDB:b0436 (EcoliWiki Page)

Summary of data for tig from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (453943..454420) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ11; Well:A3[7]

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Notes

Accessions Related to tig Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11003

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0996

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0436

EcoGene

EcoGene:EG11003

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000992

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001511

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G55220 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5Z4M6 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000036071 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

TIG

From SHIGELLACYC

E. coli O157

TIG

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

Superfamily (EcoliWiki Page)

SUPERFAMILY:54534

Superfamily (EcoliWiki Page)

SUPERFAMILY:102735

Superfamily (EcoliWiki Page)

SUPERFAMILY:109998

Pfam (EcoliWiki Page)

PF05697 Bacterial trigger factor protein (TF)

Pfam (EcoliWiki Page)

PF05698 Bacterial trigger factor protein (TF) C-terminus

EcoCyc

EcoCyc:EG11003

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11003

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000992

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0996

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001511

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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