secA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

secA

Gene Synonym(s)

ECK0099, b0098, JW0096, azi, pea, prlD[1], prlD

Product Desc.

SecA[2][3];

Component of Sec Protein Secretion Complex[2][3]

Translocon ATPase; targets protein precursors to the SecYE core translocon for secretion; autogenous translational repressor; ATP-dependent helicase activity on secMA mRNA; homodimeric/monomeric[4]

Product Synonyms(s)

preprotein translocase subunit, ATPase[1], B0098[2][1], Pea[2][1], Azi[2][1], PrlD[2][1], SecA[2][1] , azi, ECK0099, JW0096, pea, prlD, b0098

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): secMA-mutT[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Helicase activity is dispensable for both functions. Oligomerization induced by signal peptides. secA is regulated by the secretion competence of the SecM signal peptide. HT_Cmplx33_Cyt: AcpP+PurB+SecA. HT_Cmplx48_Mem: SecA+YdgA+YjiY.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

secA

Mnemonic

Secretory

Synonyms

ECK0099, b0098, JW0096, azi, pea, prlD[1], prlD

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

2.33 minutes 

MG1655: 108279..110984
<gbrowseImage> name=NC_000913:108279..110984 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 111083..113788
<gbrowseImage> name=NC_012967:111083..113788 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 108278..110983
<gbrowseImage> name=NC_012759:108278..110983 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 108279..110984
<gbrowseImage> name=NC_007779:108279..110984 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 82383..85088
<gbrowseImage> name=NC_010473:82383..85088 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

108279

Edman degradation

PMID:2841285


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

secA207(aziR)

azide resistant

CGSC:6430

secA206(aziR)

azide resistant

CGSC:4928

secA214(aziR)

azide resistant

CGSC:6432

secA215

CGSC:6917

secA204(aziR)

azide resistant

CGSC:8372

secA209(aziR)

azide resistant

CGSC:8422

secA216

CGSC:9825

secA201(aziR)

azide resistant

CGSC:13121

secA202(aziR)

azide resistant

CGSC:13339

secA203(aziR)

azide resistant

CGSC:13341

secA205(aziR)

azide resistant

CGSC:13953

secA51(ts)

temperature sensitive

PMID:7665473

CGSC:38546


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Notes

SecA mutants were first identified by Oliver and Beckwith[5] by looking for suppressors of the Lac- phenotype of a maE-lacZ fusion. The original secA alleles were ts lethals.


Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0096

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCTAATCAAATTGTTAACTAA

Primer 2:CCTTGCAGGCGGCCATGGCACTG

15B8

Kohara Phage

Genobase

PMID:3038334

leuO3051::Tn10

Linked marker

CAG12095 = CGSC7324[6]

est. P1 cotransduction: 39% [7]
Synonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).

zad-220::Tn10

Linked marker

CAG12025 = CGSC7326[6]

est. P1 cotransduction: 18% [7]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10936

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10936

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000925

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944821

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0929

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000343

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SecA

Synonyms

preprotein translocase subunit, ATPase[1], B0098[2][1], Pea[2][1], Azi[2][1], PrlD[2][1], SecA[2][1] , azi, ECK0099, JW0096, pea, prlD, b0098

Product description

SecA[2][3];

Component of Sec Protein Secretion Complex[2][3]

Translocon ATPase; targets protein precursors to the SecYE core translocon for secretion; autogenous translational repressor; ATP-dependent helicase activity on secMA mRNA; homodimeric/monomeric[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011130

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:17229438

IPI: Inferred from Physical Interaction

F

Seeded from EcoCyc (v14.0)

Missing: with/from

GO:0005515

protein binding

PMID:17229438

IPI: Inferred from Physical Interaction

EcoliWiki:secA

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01382

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000185

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011115

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

PMID:1837021

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

PMID:1837021

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006605

protein targeting

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01382

P

Seeded from EcoCyc (v14.0)

complete

GO:0006605

protein targeting

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000185

P

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0017038

protein import

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011115

P

Seeded from EcoCyc (v14.0)

complete

GO:0017038

protein import

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011116

P

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:17229438

IPI: Inferred from Physical Interaction

EcoliWiki:secA

F

E. coli SecA is a homodimer.

complete

GO:0017038

protein import

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011130

P

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

PMID:17229438

IPI: Inferred from Physical Interaction

F

Missing: with/from

GO:0065002

intracellular protein transmembrane transport

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01382

P

Seeded from EcoCyc (v14.0)

complete

GO:0065002

intracellular protein transmembrane transport

PMID:6279567

IMP: Inferred from Mutant Phenotype

P

secA51(Ts)

complete

GO:0065002

intracellular protein transmembrane transport

PMID:6279567

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

PMID:6279567

IMP: Inferred from Mutant Phenotype

P

complete

GO:0006605

protein targeting

PMID:6279567

IMP: Inferred from Mutant Phenotype

P

complete

GO:0005737

cytoplasm

PMID:1837021

IDA: Inferred from Direct Assay

C

Dimeric form of SecA is cytoplasmically localized (Figure 2 & 4).

complete

GO:0005886

plasma membrane

PMID:1837021

IDA: Inferred from Direct Assay

C

SecA is also strongly associated with the plasma membrane (Figure 5).

complete

GO:0043952

protein transport by the Sec complex

PMID:6279567

IMP: Inferred from Mutant Phenotype

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of Sec Protein Secretion Complex

could be indirect

Protein

ycfB

PMID:15690043

Experiment(s):EBI-886105

Protein

ycaO

PMID:15690043

Experiment(s):EBI-880477

Protein

dnaK

PMID:15690043

Experiment(s):EBI-880477

Protein

gatZ

PMID:15690043

Experiment(s):EBI-880477

Protein

infC

PMID:15690043

Experiment(s):EBI-880477

Protein

minD

PMID:15690043

Experiment(s):EBI-880477

Protein

rho

PMID:15690043

Experiment(s):EBI-880477

Protein

secB

PMID:15690043

Experiment(s):EBI-880477, EBI-880504, EBI-886105

Protein

tufA

PMID:15690043

Experiment(s):EBI-880477, EBI-889981, EBI-886105, EBI-894882

Protein

rplL

PMID:15690043

Experiment(s):EBI-886105

Protein

rplV

PMID:15690043

Experiment(s):EBI-886105

Protein

rpsB

PMID:15690043

Experiment(s):EBI-886105

Protein

ybiU

PMID:15690043

Experiment(s):EBI-886105

Protein

aas

PMID:15690043

Experiment(s):EBI-886105

Protein

norV

PMID:15690043

Experiment(s):EBI-886105

Protein

bioB

PMID:15690043

Experiment(s):EBI-886105

Protein

motA

PMID:15690043

Experiment(s):EBI-886105

Protein

rplK

PMID:15690043

Experiment(s):EBI-886105

Protein

acpP

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):18.837554

Protein

fimA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplK

PMID:19402753

LCMS(ID Probability):99.4

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6

Protein

hns

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):14.030777

Protein

secB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):17.040815

Protein

rpsJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

cspE

PMID:19402753

LCMS(ID Probability):98.9 MALDI(Z-score):17.462556

Protein

rpmB

PMID:19402753

LCMS(ID Probability):99.6

Protein

kefA

PMID:19402753

MALDI(Z-score):18.451503

Protein

rho

PMID:19402753

MALDI(Z-score):34.875526

Protein

metK

PMID:19402753

MALDI(Z-score):21.897250

Protein

mnmA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.4 MALDI(Z-score):17.053160

Protein

minD

PMID:19402753

MALDI(Z-score):30.779902

Protein

norV

PMID:19402753

LCMS(ID Probability):99.6

Protein

gatZ

PMID:19402753

MALDI(Z-score):21.103314

Protein

aas

PMID:19402753

LCMS(ID Probability):99.6

Protein

motA

PMID:19402753

LCMS(ID Probability):99.6

Protein

bioB

PMID:19402753

LCMS(ID Probability):99.6

Protein

ybiU

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplL

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLIKLLTKVF GSRNDRTLRR MRKVVNIINA MEPEMEKLSD EELKGKTAEF RARLEKGEVL
ENLIPEAFAV VREASKRVFG MRHFDVQLLG GMVLNERCIA EMRTGEGKTL TATLPAYLNA
LTGKGVHVVT VNDYLAQRDA ENNRPLFEFL GLTVGINLPG MPAPAKREAY AADITYGTNN
EYGFDYLRDN MAFSPEERVQ RKLHYALVDE VDSILIDEAR TPLIISGPAE DSSEMYKRVN
KIIPHLIRQE KEDSETFQGE GHFSVDEKSR QVNLTERGLV LIEELLVKEG IMDEGESLYS
PANIMLMHHV TAALRAHALF TRDVDYIVKD GEVIIVDEHT GRTMQGRRWS DGLHQAVEAK
EGVQIQNENQ TLASITFQNY FRLYEKLAGM TGTADTEAFE FSSIYKLDTV VVPTNRPMIR
KDLPDLVYMT EAEKIQAIIE DIKERTAKGQ PVLVGTISIE KSELVSNELT KAGIKHNVLN
AKFHANEAAI VAQAGYPAAV TIATNMAGRG TDIVLGGSWQ AEVAALENPT AEQIEKIKAD
WQVRHDAVLE AGGLHIIGTE RHESRRIDNQ LRGRSGRQGD AGSSRFYLSM EDALMRIFAS
DRVSGMMRKL GMKPGEAIEH PWVTKAIANA QRKVESRNFD IRKQLLEYDD VANDQRRAIY
SQRNELLDVS DVSETINSIR EDVFKATIDA YIPPQSLEEM WDIPGLQERL KNDFDLDLPI
AEWLDKEPEL HEETLRERIL AQSIEVYQRK EEVVGAEMMR HFEKGVMLQT LDSLWKEHLA
AMDYLRQGIH LRGYAQKDPK QEYKRESFSM FAAMLESLKY EVISTLSKVQ VRMPEEVEEL
EQQRRMEAER LAQMQQLSHQ DDDSAAAAAL AAQTGERKVG RNDPCPCGSG KKYKQCHGRL Q
Length

901

Mol. Wt

102.024 kDa

pI

5.4 (calculated)

Extinction coefficient

75,750 - 76,250 (calc based on 25 Y, 7 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

881..901

PF02810 SEC-C motif

PMID:19920124

Domain

228..358

PF01043 SecA preprotein cross-linking domain

PMID:19920124

Domain

617..831

PF07516 SecA Wing and Scaffold domain

PMID:19920124

Domain

6..402

PF07517 SecA DEAD-like domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=secA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128091

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944821

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000343

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P10408

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10936

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10936

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944821

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000925

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0929

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

5.18E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

71.319+/-0.353

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.104805915

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

3987

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1148

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

3269

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

secMA-mutT

edit table
Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:108259..108299 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0098 (EcoliWiki Page)

NCBI GEO profiles for secA

microarray

GenExpDB:b0098 (EcoliWiki Page)

Summary of data for secA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (108145..108338) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ13; Well:F6[8]

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Notes

Accessions Related to secA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10936

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0929

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0098

EcoGene

EcoGene:EG10936

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000925

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000343

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000026425 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000029350 (score: 0.342)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G01800 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0183872 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q657P0 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000183023 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014261001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000018247 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

SECA

From SHIGELLACYC

E. coli O157

SECA

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:81767

Superfamily (EcoliWiki Page)

SUPERFAMILY:81886

Pfam (EcoliWiki Page)

PF02810 SEC-C motif

Pfam (EcoliWiki Page)

PF01043 SecA preprotein cross-linking domain

Pfam (EcoliWiki Page)

PF07516 SecA Wing and Scaffold domain

Pfam (EcoliWiki Page)

PF07517 SecA DEAD-like domain

EcoCyc

EcoCyc:EG10936

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10936

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000925

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0929

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000343

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Oliver, DB & Beckwith, J (1981) E. coli mutant pleiotropically defective in the export of secreted proteins. Cell 25 765-72 PubMed
  6. ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  8. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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