rcsC:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

rcsC

Gene Synonym(s)

ECK2211, b2218, JW5917, JW5920, JW5920+JW5917[1]

Product Desc.

RcsC sensor kinase[2][3]

Negative regulatory gene for capsule (colanic acid) synthesis, controls sliminess; contains TerF; probable histidine kinase[4]

Product Synonyms(s)

hybrid sensory kinase in two-component regulatory system with RcsB and YojN[1], B2218[2][1], sensor protein RcsC-Phis[2][1], ECK2211, JW5917, JW5920, b2218

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rcsC[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rcsC

Mnemonic

Regulator of capsule synthesis

Synonyms

ECK2211, b2218, JW5917, JW5920, JW5920+JW5917[1]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

49.9 minutes, 49.9 minutes 

MG1655: 2317850..2315049
<gbrowseImage> name=NC_000913:2315049..2317850 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2266528..2263727
<gbrowseImage> name=NC_012967:2263727..2266528 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2200854..2203703
<gbrowseImage> name=NC_012759:2200854..2203703 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2320735..2320361
<gbrowseImage> name=NC_007779:2320361..2320735 source=W3110 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2324498..2322075
<gbrowseImage> name=NC_007779:2322075..2324498 source=W3110 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2324498..2320361
<gbrowseImage> name=NC_007779:2320361..2324498 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2408886..2406037
<gbrowseImage> name=NC_010473:2406037..2408886 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔrcsC (Keio:JW5917)

deletion

deletion

PMID:16738554

Shigen

rcsC::Tn5KAN-2 (FB20714)

Insertion at nt 1312 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20714

contains pKD46

rcsC::Tn5KAN-2 (FB20715)

Insertion at nt 1312 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20715

does not contain pKD46

rcsCD948E

D948E

(in strain: O9:K30:H12)

Strain variation; seeded from UniProt:P14376

rcsCL315V

L315V

(in strain: O9:K30:H12)

Strain variation; seeded from UniProt:P14376

rcsCK776E

K776E

(in strain: O9:K30:H12)

Strain variation; seeded from UniProt:P14376

rcsCI890T

I890T

(in strain: O9:K30:H12)

Strain variation; seeded from UniProt:P14376

rcsCL938V

L938V

(in strain: O9:K30:H12)

Strain variation; seeded from UniProt:P14376

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

22A6

Kohara Phage

Genobase

PMID:3038334

5A1

Kohara Phage

Genobase

PMID:3038334

4F12

Kohara Phage

Genobase

PMID:3038334

napA722::Tn10

Linked marker

CAG12098 = CGSC7400[5]

est. P1 cotransduction: 62% [6]
Synonyms:zeg-722, zei-722::Tn10

atoS298::Tn10

Linked marker

CAG12177 gyrA+ = CGSC7525[5]

est. P1 cotransduction: 85% [6]
Synonyms:zeh-298::Tn10, zej-298::Tn10 nnnThe original CAG12177 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10822

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10822

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000813

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948993

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0815

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007336

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RcsC

Synonyms

hybrid sensory kinase in two-component regulatory system with RcsB and YojN[1], B2218[2][1], sensor protein RcsC-Phis[2][1], ECK2211, JW5917, JW5920, b2218

Product description

RcsC sensor kinase[2][3]

Negative regulatory gene for capsule (colanic acid) synthesis, controls sliminess; contains TerF; probable histidine kinase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000155

two-component sensor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003661

F

Seeded from EcoCyc (v14.0)

complete

GO:0000155

two-component sensor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005467

F

Seeded from EcoCyc (v14.0)

complete

GO:0000156

two-component response regulator activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001789

F

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001789

P

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019017

P

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0902

P

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0004673

protein histidine kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005467

F

Seeded from EcoCyc (v14.0)

complete

GO:0004673

protein histidine kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019017

F

Seeded from EcoCyc (v14.0)

complete

GO:0004673

protein histidine kinase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.13.3

F

Seeded from EcoCyc (v14.0)

complete

GO:0004871

signal transducer activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000014

F

Seeded from EcoCyc (v14.0)

complete

GO:0004871

signal transducer activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009082

F

Seeded from EcoCyc (v14.0)

complete

GO:0004871

signal transducer activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019017

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003594

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019017

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019017

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001789

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019017

P

Seeded from EcoCyc (v14.0)

complete

GO:0007165

signal transduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000014

P

Seeded from EcoCyc (v14.0)

complete

GO:0007165

signal transduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003661

P

Seeded from EcoCyc (v14.0)

complete

GO:0007165

signal transduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005467

P

Seeded from EcoCyc (v14.0)

complete

GO:0007165

signal transduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009082

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003661

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019017

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

GO:0016301

kinase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0418

F

Seeded from EcoCyc (v14.0)

complete

GO:0016310

phosphorylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004358

P

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016772

transferase activity, transferring phosphorus-containing groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004358

F

Seeded from EcoCyc (v14.0)

complete

GO:0018106

peptidyl-histidine phosphorylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005467

P

Seeded from EcoCyc (v14.0)

complete

GO:0018106

peptidyl-histidine phosphorylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019017

P

Seeded from EcoCyc (v14.0)

complete

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Interactions

RcsC-Phis

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MFRALALVLW LLIAFSSVFY IVNALHQRES EIRQEFNLSS DQAQRFIQRT SDVMKELKYI
AENRLSAENG VLSPRGRETQ ADVPAFEPLF ADSDCSAMSN TWRGSLESLA WFMRYWRDNF
SAAYDLNRVF LIGSDNLCMA NFGLRDMPVE RDTALKALHE RINKYRNAPQ DDSGSNLYWI
SEGPRPGVGY FYALTPVYLA NRLQALLGVE QTIRMENFFL PGTLPMGVTI LDENGHTLIS
LTGPESKIKG DPRWMQERSW FGYTEGFREL VLKKNLPPSS LSIVYSVPVD KVLERIRMLI
LNAILLNVLA GAALFTLARM YERRIFIPAE SDALRLEEHE QFNRKIVASA PVGICILRTA
DGVNILSNEL AHTYLNMLTH EDRQRLTQII CGQQVNFVDV LTSNNTNLQI SFVHSRYRNE
NVAICVLVDV SSRVKMEESL QEMAQAAEQA SQSKSMFLAT VSHELRTPLY GIIGNLDLLQ
TKELPKGVDR LVTAMNNSSS LLLKIISDIL DFSKIESEQL KIEPREFSPR EVMNHITANY
LPLVVRKQLG LYCFIEPDVP VALNGDPMRL QQVISNLLSN AIKFTDTGCI VLHVRADGDY
LSIRVRDTGV GIPAKEVVRL FDPFFQVGTG VQRNFQGTGL GLAICEKLIS MMDGDISVDS
EPGMGSQFTV RIPLYGAQYP QKKGVEGLSG KRCWLAVRNA SLCQFLETSL QRSGIVVTTY
EGQEPTPEDV LITDEVVSKK WQGRAVVTFC RRHIGIPLEK APGEWVHSVA APHELPALLA
RIYLIEMESD DPANALPSTD KAVSDNDDMM ILVVDDHPIN RRLLADQLGS LGYQCKTAND
GVDALNVLSK NHIDIVLSDV NMPNMDGYRL TQRIRQLGLT LPVIGVTANA LAEEKQRCLE
SGMDSCLSKP VTLDVIKQTL TLYAERVRKS RDS
Length

933

Mol. Wt

104.59 kDa

pI

5.9 (calculated)

Extinction coefficient

92,250 - 94,000 (calc based on 25 Y, 10 W, and 14 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

581..691

PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

PMID:19920124

Domain

469..534

PF00512 His Kinase A (phosphoacceptor) domain

PMID:19920124

Domain

827..937

PF00072 Response regulator receiver domain

PMID:19920124

Domain

708..799

PF09456 RcsC Alpha-Beta-Loop (ABL)

PMID:19920124

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<motif_map/>

tmhmm.php?gene=rcsC&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rcsC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698285

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948993

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007336

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P14376

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10822

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10822

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948993

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000813

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0815

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

8.874+/-0.205

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.030748663

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

102

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

70

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

60

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rcsC

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2317830..2317870 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2218 (EcoliWiki Page)

NCBI GEO profiles for rcsC

microarray

GenExpDB:b2218 (EcoliWiki Page)

Summary of data for rcsC from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2317751..2318083) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ19; Well:B5[7]

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Notes

Accessions Related to rcsC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10822

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0815

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2218

EcoGene

EcoGene:EG10822

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000813

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007336

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000017693 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G04280 (score: 1.000; bootstrap: 100%)
  • AT5G26594 (score: 0.117)

From Inparanoid:20070104

Oryza gramene

  • Q71HN6 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YIL147C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000045806 (score: 1.000; bootstrap: 97%)
  • ENSXETP00000006545 (score: 0.083)

From Inparanoid:20070104

Shigella flexneri

RCSC

From SHIGELLACYC

E. coli O157

RCSC

From ECOO157CYC

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Notes

Families

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Database Accession Notes

Pfam (EcoliWiki Page)

PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Pfam (EcoliWiki Page)

PF00512 His Kinase A (phosphoacceptor) domain

Pfam (EcoliWiki Page)

PF09456 RcsC Alpha-Beta-Loop (ABL)

Pfam (EcoliWiki Page)

PF00072 Response regulator receiver domain


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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