putA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

putA

Gene Synonym(s)

ECK1005, b1014, JW0999, poaA, putC, proline utilization A[1][2]

Product Desc.

PutA bifunctional enzyme and transcriptional regulator[2]; PutA transcriptional repressor, Proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase[3];

Component of PUTA-CPLX[2]; PutA transcriptional repressor, Proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase[3]

Proline dehydrogenase and repressor for the putAP divergon[4]

Product Synonyms(s)

fused DNA-binding transcriptional regulator[1], proline dehydrogenase[1], pyrroline-5-carboxylate dehydrogenase[1], B1014[2][1], PutC[2][1], PoaA[2][1], PutA[2][1] , ECK1005, JW0999, poaA, putC, b1014

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): putA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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PutA is a multifunctional membrane-associated flavoprotein involved in proline catabolism: the central proline dehydrogenese domain feeds its product to the C-terminal Delta(1)-pyrroline-5-carboxylate dehydrogenese domain, to produce glutamate. The N-terminal 90 residue domain is the DNA-binding repressor domain. A divergon is a regulon comprised of two adjacent divergent operons or genes. Binds TrxA (Kumar, 2004).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

putA

Mnemonic

Proline utilization

Synonyms

ECK1005, b1014, JW0999, poaA, putC, proline utilization A[1][2]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

23.15 minutes 

MG1655: 1078105..1074143
<gbrowseImage> name=NC_000913:1074143..1078105 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1095166..1091204
<gbrowseImage> name=NC_012967:1091204..1095166 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 977111..981073
<gbrowseImage> name=NC_012759:977111..981073 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1079304..1075342
<gbrowseImage> name=NC_007779:1075342..1079304 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1132033..1128071
<gbrowseImage> name=NC_010473:1128071..1132033 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

putA(del) (Keio:JW0999)

deletion

deletion

PMID:16738554

Shigen

CGSC8981[5]

putA11

CGSC:12047

putA1::Tn5

PMID:7016835

CGSC:89583

put(del)A758::kan

PMID:16738554

CGSC:102550

putAP(del)101

Auxotrophies

Proline Auxotroph

PMID:6355059

Strains: RM2

putP putA +

Resistant to

Dehydroproline resistance

PMID:7016835

Strain:CSH4

table 2

putP putA +

Resistant to

L-Azetidine-2-carboxylate resistance

PMID:7016835

Strain:CSH4

table 2

putP in strain C4

Resistant to

Dehydroproline resistance

PMID:4865475

Strain: C4

Table 1

putP in strain C4

Resistant to

L-Azetidine-2-carboxylate resistance

PMID:4865475

Strain: C4

Table 1

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0999

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:gccGGAACCACCACCATGGGGGTTAAGCTG

Primer 2:ccACCTATAGTCATTAAGCTGGCGTTACCG

7B5

Kohara Phage

Genobase

PMID:3038334

zcc-282::Tn10

Linked marker

CAG18466 = CGSC7359[5]

est. P1 cotransduction: 67% [6]

zce-726::Tn10

Linked marker

CAG12078 = CGSC7361[5]

est. P1 cotransduction: % [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10801

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10801

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000792

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945600

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0794

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003424

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PutA

Synonyms

fused DNA-binding transcriptional regulator[1], proline dehydrogenase[1], pyrroline-5-carboxylate dehydrogenase[1], B1014[2][1], PutC[2][1], PoaA[2][1], PutA[2][1] , ECK1005, JW0999, poaA, putC, b1014

Product description

PutA bifunctional enzyme and transcriptional regulator[2]; PutA transcriptional repressor, Proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase[3];

Component of PUTA-CPLX[2]; PutA transcriptional repressor, Proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase[3]

Proline dehydrogenase and repressor for the putAP divergon[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003677

DNA binding

PMID:1618807

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

PMID:18586269

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0003842

1-pyrroline-5-carboxylate dehydrogenase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005933

F

Seeded from EcoCyc (v14.0)

complete

GO:0003842

1-pyrroline-5-carboxylate dehydrogenase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.5.1.12

F

Seeded from EcoCyc (v14.0)

complete

GO:0003842

1-pyrroline-5-carboxylate dehydrogenase activity

PMID:1618807

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0004657

proline dehydrogenase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002872

F

Seeded from EcoCyc (v14.0)

complete

GO:0004657

proline dehydrogenase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.5.99.8

F

Seeded from EcoCyc (v14.0)

complete

GO:0004657

proline dehydrogenase activity

PMID:1618807

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P63389

F

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006537

glutamate biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002872

P

Seeded from EcoCyc (v14.0)

complete

GO:0006561

proline biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005933

P

Seeded from EcoCyc (v14.0)

complete

GO:0010133

proline catabolic process to glutamate

PMID:7006756

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0010843

promoter binding

PMID:18586269

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0016566

specific transcriptional repressor activity

PMID:18586269

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

PMID:1618807

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002872

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005933

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015590

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016160

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016161

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016162

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of PUTA-CPLX

could be indirect

Protein

ydaC

PMID:16606699

Experiment(s):EBI-1138642

Protein

eutM

PMID:16606699

Experiment(s):EBI-1138642

Protein

yfaS

PMID:16606699

Experiment(s):EBI-1138642

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1138642

Protein

mukF

PMID:16606699

Experiment(s):EBI-1138642

Protein

groL

PMID:16606699

Experiment(s):EBI-1138642

Protein

rplQ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753

LCMS(ID Probability):99.6

Protein

yfiD

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplR

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753

LCMS(ID Probability):99.6

Protein

ahpC

PMID:19402753

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):2.778583

Protein

dnaN

PMID:19402753

MALDI(Z-score):22.046630

Protein

elaB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpmC

PMID:19402753

LCMS(ID Probability):99.6

Protein

hns

PMID:19402753

LCMS(ID Probability):99.6

Protein

eno

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpmG

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753

LCMS(ID Probability):99.6

Protein

tufB

PMID:19402753

MALDI(Z-score):18.820564

Protein

adk

PMID:19402753

LCMS(ID Probability):99.6

Protein

phoA

PMID:19402753

LCMS(ID Probability):99.6

Protein

pgk

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):5.720428

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.6

Protein

fbaA

PMID:19402753

LCMS(ID Probability):99.6

Protein

hslV

PMID:19402753

LCMS(ID Probability):99.6

Protein

ribE

PMID:19402753

LCMS(ID Probability):99.6

Protein

cspC

PMID:19402753

LCMS(ID Probability):99.6

Protein

talB

PMID:19402753

LCMS(ID Probability):99.6

Protein

leuD

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGTTTMGVKL DDATRERIKS AATRIDRTPH WLIKQAIFSY LEQLENSDTL PELPALLSGA
ANESDEAPTP AEEPHQPFLD FAEQILPQSV SRAAITAAYR RPETEAVSML LEQARLPQPV
AEQAHKLAYQ LADKLRNQKN ASGRAGMVQG LLQEFSLSSQ EGVALMCLAE ALLRIPDKAT
RDALIRDKIS NGNWQSHIGR SPSLFVNAAT WGLLFTGKLV STHNEASLSR SLNRIIGKSG
EPLIRKGVDM AMRLMGEQFV TGETIAEALA NARKLEEKGF RYSYDMLGEA ALTAADAQAY
MVSYQQAIHA IGKASNGRGI YEGPGISIKL SALHPRYSRA QYDRVMEELY PRLKSLTLLA
RQYDIGINID AEESDRLEIS LDLLEKLCFE PELAGWNGIG FVIQAYQKRC PLVIDYLIDL
ATRSRRRLMI RLVKGAYWDS EIKRAQMDGL EGYPVYTRKV YTDVSYLACA KKLLAVPNLI
YPQFATHNAH TLAAIYQLAG QNYYPGQYEF QCLHGMGEPL YEQVTGKVAD GKLNRPCRIY
APVGTHETLL AYLVRRLLEN GANTSFVNRI ADTSLPLDEL VADPVTAVEK LAQQEGQTGL
PHPKIPLPRD LYGHGRDNSA GLDLANEHRL ASLSSALLNS ALQKWQALPM LEQPVAAGEM
SPVINPAEPK DIVGYVREAT PREVEQALES AVNNAPIWFA TPPAERAAIL HRAAVLMESQ
MQQLIGILVR EAGKTFSNAI AEVREAVDFL HYYAGQVRDD FANETHRPLG PVVCISPWNF
PLAIFTGQIA AALAAGNSVL AKPAEQTPLI AAQGIAILLE AGVPPGVVQL LPGRGETVGA
QLTGDDRVRG VMFTGSTEVA TLLQRNIASR LDAQGRPIPL IAETGGMNAM IVDSSALTEQ
VVVDVLASAF DSAGQRCSAL RVLCLQDEIA DHTLKMLRGA MAECRMGNPG RLTTDIGPVI
DSEAKANIER HIQTMRSKGR PVFQAVRENS EDAREWQSGT FVAPTLIELD DFAELQKEVF
GPVLHVVRYN RNQLPELIEQ INASGYGLTL GVHTRIDETI AQVTGSAHVG NLYVNRNMVG
AVVGVQPFGG EGLSGTGPKA GGPLYLYRLL ANRPESALAV TLARQDAKYP VDAQLKAALT
QPLNALREWA ANRPELQALC TQYGELAQAG TQRLLPGPTG ERNTWTLLPR ERVLCIADDE
QDALTQLAAV LAVGSQVLWP DDALHRQLVK ALPSAVSERI QLAKAENITA QPFDAVIFHG
DSDQLRALCE AVAARDGTIV SVQGFARGES NILLERLYIE RSLSVNTAAA GGNASLMTIG
Length

1,320

Mol. Wt

143.817 kDa

pI

5.9 (calculated)

Extinction coefficient

124,110 - 125,735 (calc based on 39 Y, 12 W, and 13 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

654..1111

PF00171 Aldehyde dehydrogenase family

PMID:19920124

Domain

228..574

PF01619 Proline dehydrogenase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=putA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128980

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945600

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003424

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P09546

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10801

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10801

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945600

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000792

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0794

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

3.29E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

12.847+/-0.126

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.009464917

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

222

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

64

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

334

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

putA

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1078085..1078125 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1014 (EcoliWiki Page)

NCBI GEO profiles for putA

microarray

GenExpDB:b1014 (EcoliWiki Page)

Summary of data for putA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to putA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10801

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0794

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1014

EcoGene

EcoGene:EG10801

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000792

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003424

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Ciona intestinalis

  • ENSCINP00000005449 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0229934 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20135-PA (score: 1.000; bootstrap: 75%)
  • GA17274-PA (score: 0.344)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR037W (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC24C64 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

E. coli O157

PUTA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00171 Aldehyde dehydrogenase family

Superfamily (EcoliWiki Page)

SUPERFAMILY:51730

Panther (EcoliWiki Page)

PTHR11699:SF16

Superfamily (EcoliWiki Page)

SUPERFAMILY:53720

Superfamily (EcoliWiki Page)

SUPERFAMILY:81935

Pfam (EcoliWiki Page)

PF01619 Proline dehydrogenase

EcoCyc

EcoCyc:EG10801

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10801

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000792

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0794

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003424

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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