purD:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

purD

Gene Synonym(s)

ECK3997, b4005, JW3969, adth(a), adtha[1], adth

Product Desc.

Phosphoribosylamine-glycine ligase, purine synthesis; phosphoribosylglycinamide synthase; glycinamide ribonucleotide synthase (GARS)[2]

Product Synonyms(s)

phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase[1], B4005[3][1], PurD[3][1] , adth, ECK3997, JW3969, b4005

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): purHD[3], OP00078, purH

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

purD

Mnemonic

Purine

Synonyms

ECK3997, b4005, JW3969, adth(a), adtha[1], adth

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

90.58 minutes 

MG1655: 4203954..4202665
<gbrowseImage> name=NC_000913:4202665..4203954 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4185516..4184227
<gbrowseImage> name=NC_012967:4184227..4185516 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4092345..4093634
<gbrowseImage> name=NC_012759:4092345..4093634 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3430750..3432039
<gbrowseImage> name=NC_007779:3430750..3432039 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4303650..4302361
<gbrowseImage> name=NC_010473:4302361..4303650 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔpurD (Keio:JW3969)

deletion

deletion

PMID:16738554

Shigen
CGSC10855[4]

purD81(KanR)::Tn5

CGSC:7278

purD90

CGSC:7461

purD38::Mu

CGSC:9082

purD62

CGSC:9750

purD13

CGSC:11164

ΔpurD776::kan

PMID:16738554

CGSC:102530


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3969

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAAGTATTAGTGATTGGTAA

Primer 2:CCGTTCTGCTCGCGTTCGATAGC

thiC39::Tn10

Linked marker

CAG18500 = CGSC7472[4]

est. P1 cotransduction: 75% [5]
Synonyms:thi-39::Tn10

malF3089::Tn10

Linked marker

CAG12164 = CGSC7476[4]

est. P1 cotransduction: 21% [5]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10792

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10792

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000783

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948504

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0785

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013095

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PurD

Synonyms

phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase[1], B4005[3][1], PurD[3][1] , adth, ECK3997, JW3969, b4005

Product description

Phosphoribosylamine-glycine ligase, purine synthesis; phosphoribosylglycinamide synthase; glycinamide ribonucleotide synthase (GARS)[2]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011761

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013815

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013816

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013817

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016185

F

Seeded from EcoCyc (v14.0)

complete

GO:0004637

phosphoribosylamine-glycine ligase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00138

F

Seeded from EcoCyc (v14.0)

complete

GO:0004637

phosphoribosylamine-glycine ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000115

F

Seeded from EcoCyc (v14.0)

complete

GO:0004637

phosphoribosylamine-glycine ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020559

F

Seeded from EcoCyc (v14.0)

complete

GO:0004637

phosphoribosylamine-glycine ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020560

F

Seeded from EcoCyc (v14.0)

complete

GO:0004637

phosphoribosylamine-glycine ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020562

F

Seeded from EcoCyc (v14.0)

complete

GO:0004637

phosphoribosylamine-glycine ligase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:6.3.4.13

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011761

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013815

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013816

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013817

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016185

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0006164

purine nucleotide biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00138

P

Seeded from EcoCyc (v14.0)

complete

GO:0006164

purine nucleotide biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0658

P

Seeded from EcoCyc (v14.0)

complete

GO:0009113

purine base biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000115

P

Seeded from EcoCyc (v14.0)

complete

GO:0009113

purine base biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020559

P

Seeded from EcoCyc (v14.0)

complete

GO:0009113

purine base biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020560

P

Seeded from EcoCyc (v14.0)

complete

GO:0009113

purine base biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020562

P

Seeded from EcoCyc (v14.0)

complete

GO:0016874

ligase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0436

F

Seeded from EcoCyc (v14.0)

complete

GO:0030145

manganese ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0464

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

PMID:11967071

IEP: Inferred from Expression Pattern

P

complete

GO:0004637

phosphoribosylamine-glycine ligase activity

PMID:2182115

IDA: Inferred from Direct Assay

F

complete

GO:0006164

purine nucleotide biosynthetic process

PMID:2182115

NAS: Non-traceable Author Statement

P

complete

GO:0042623

ATPase activity, coupled

PMID:2182115

IDA: Inferred from Direct Assay

F

complete

GO:0005524

ATP binding

PMID:2182115

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

arpA

PMID:16606699

Experiment(s):EBI-1147263

Protein

glyS

PMID:16606699

Experiment(s):EBI-1147263

Protein

fusA

PMID:16606699

Experiment(s):EBI-1147263
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKVLVIGNGG REHALAWKAA QSPLVETVFV APGNAGTALE PALQNVAIGV TDIPALLDFA
QNEKIDLTIV GPEAPLVKGV VDTFRAAGLK IFGPTAGAAQ LEGSKAFTKD FLARHKIPTA
EYQNFTEVEP ALAYLREKGA PIVIKADGLA AGKGVIVAMT LEEAEAAVHD MLAGNAFGDA
GHRIVIEEFL DGEEASFIVM VDGEHVLPMA TSQDHKRVGD KDTGPNTGGM GAYSPAPVVT
DDVHQRTMER IIWPTVKGMA AEGNTYTGFL YAGLMIDKQG NPKVIEFNCR FGDPETQPIM
LRMKSDLVEL CLAACESKLD EKTSEWDERA SLGVVMAAGG YPGDYRTGDV IHGLPLEEVA
GGKVFHAGTK LADDEQVVTN GGRVLCVTAL GHTVAEAQKR AYALMTDIHW DDCFCRKDIG
WRAIEREQN
Length

429

Mol. Wt

45.939 kDa

pI

4.8 (calculated)

Extinction coefficient

39,420 - 40,170 (calc based on 8 Y, 5 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

103..296

PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain

PMID:19920124

Domain

330..424

PF02843 Phosphoribosylglycinamide synthetase, C domain

PMID:19920124

Domain

1..102

PF02844 Phosphoribosylglycinamide synthetase, N domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=purD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131835

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948504

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013095

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P15640

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10792

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10792

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948504

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000783

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0785

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

5.35E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

1072

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1372

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

337

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

purHD

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:4203934..4203974 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b4005 (EcoliWiki Page)

NCBI GEO profiles for purD

microarray

GenExpDB:b4005 (EcoliWiki Page)

Summary of data for purD from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to purD Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10792

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0785

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4005

EcoGene

EcoGene:EG10792

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000783

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013095

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000015750 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000020955 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G09830 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012108 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032125 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00018174 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000013625 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-000616-14 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-328 (score: 0.867)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230084 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0000053 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16345-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025711 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000025709 (score: 0.546)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000290230 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029894 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000026338 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:95654 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6YZX5 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000023870 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000033253 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGL234W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC4051 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000132027 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015817001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000051826 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

PURD

From SHIGELLACYC

E. coli O157

PURD

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02844 Phosphoribosylglycinamide synthetase, N domain

Pfam (EcoliWiki Page)

PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain

Pfam (EcoliWiki Page)

PF02843 Phosphoribosylglycinamide synthetase, C domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51246

Superfamily (EcoliWiki Page)

SUPERFAMILY:52440

Panther (EcoliWiki Page)

PTHR10520:SF10

Superfamily (EcoliWiki Page)

SUPERFAMILY:56059

EcoCyc

EcoCyc:EG10792

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10792

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000783

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0785

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013095

Escherichia coli str. K-12 substr. MG1655

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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