purA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

purA

Gene Synonym(s)

ECK4173, b4177, JW4135, Ad4, adeK[1]

Product Desc.

PurA[2][3];

Component of adenylosuccinate synthase[2]; adenylosuccinate synthetase[3]

Adenylosuccinate synthase, purine synthesis[4]

Product Synonyms(s)

adenylosuccinate synthetase[1], B4177[2][1], AdeK[2][1], PurA[2][1] , ECK4173, JW4135, b4177

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): purA[2], OP00133

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

purA

Mnemonic

Purine

Synonyms

ECK4173, b4177, JW4135, Ad4, adeK[1]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

94.89 minutes 

MG1655: 4402710..4404008
<gbrowseImage> name=NC_000913:4402710..4404008 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4382842..4384140
<gbrowseImage> name=NC_012967:4382842..4384140 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4341445..4342743
<gbrowseImage> name=NC_012759:4341445..4342743 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4409367..4410665
<gbrowseImage> name=NC_007779:4409367..4410665 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4503072..4504370
<gbrowseImage> name=NC_010473:4503072..4504370 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

4402713

Edman degradation

PMID:3058695
PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

purA(del) (Keio:JW4135)

deletion

deletion

PMID:16738554

Shigen

CGSC10978[5]

purAK141I

K141I

Total loss of activity

seeded from UniProt:P0A7D4

purAG16V

G16V

Significant reduction in activity

seeded from UniProt:P0A7D4

purAG13V

G13V

Significant reduction in activity

seeded from UniProt:P0A7D4

purAG18V

G18V

Significant reduction in activity

seeded from UniProt:P0A7D4

purAI20T

I20T

Significant reduction in activity

seeded from UniProt:P0A7D4

purAR148L

R148L

Reduced activity

seeded from UniProt:P0A7D4

purAK19R

K19R

Significant reduction in activity

seeded from UniProt:P0A7D4

purA54

CGSC:8561

purA45

CGSC:8916

purA44

CGSC:10162

purA206(Stable,TempR,ApR)::Mud

CGSC:10915

purA46

CGSC:11068

purA727(del)::kan

PMID:16738554

CGSC:102528

purA +

Sensitivity to

Sensitivity to Nalidixic acid

PMID:4923064

ES4

figure 1

purA in strains B and W-11

Resistant to

Resistance to Methyl(6)purine + hypoxanthine

PMID:4908785

B and W-11


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW4135

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGGTAACAACGTCGTCGTACT

Primer 2:CCgGCGTCGAACGGGTCGCGCAG

3A1

Kohara Phage

Genobase

PMID:3038334

6G4

Kohara Phage

Genobase

PMID:3038334

cadB2231::Tn10

Linked marker

CAG18488 = CGSC7479[5]

est. P1 cotransduction: 13% [6]
Synonyms:zjd-2231::Tn10

cycA30::Tn10

Linked marker

CAG12073 = CGSC7482[5]

est. P1 cotransduction: 42% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10790

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10790

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000781

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948695

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0783

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013672

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PurA

Synonyms

adenylosuccinate synthetase[1], B4177[2][1], AdeK[2][1], PurA[2][1] , ECK4173, JW4135, b4177

Product description

PurA[2][3];

Component of adenylosuccinate synthase[2]; adenylosuccinate synthetase[3]

Adenylosuccinate synthase, purine synthesis[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00011

F

Seeded from EcoCyc (v14.0)

complete

GO:0004019

adenylosuccinate synthase activity

PMID:3038024

IDA: Inferred from Direct Assay

F

complete

GO:0000287

magnesium ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001114

F

Seeded from EcoCyc (v14.0)

complete

GO:0015949

nucleobase, nucleoside and nucleotide interconversion

PMID:3038024

IDA: Inferred from Direct Assay

P

complete

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0004019

adenylosuccinate synthase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00011

F

Seeded from EcoCyc (v14.0)

complete

GO:0006164

purine nucleotide biosynthetic process

PMID:4942450

IMP: Inferred from Mutant Phenotype

P

complete

GO:0004019

adenylosuccinate synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001114

F

Seeded from EcoCyc (v14.0)

complete

GO:0006164

purine nucleotide biosynthetic process

PMID:9115248

IMP: Inferred from Mutant Phenotype

P

complete

GO:0004019

adenylosuccinate synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018220

F

Seeded from EcoCyc (v14.0)

complete

GO:0046086

adenosine biosynthetic process

PMID:9115248

IMP: Inferred from Mutant Phenotype

P

complete

GO:0004019

adenylosuccinate synthase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:6.3.4.4

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00011

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001114

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018220

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0342

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00011

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001114

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

PMID:8244965

IC: Inferred by Curator

C

Missing: with/from

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006164

purine nucleotide biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00011

P

Seeded from EcoCyc (v14.0)

complete

GO:0006164

purine nucleotide biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001114

P

Seeded from EcoCyc (v14.0)

complete

GO:0006164

purine nucleotide biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018220

P

Seeded from EcoCyc (v14.0)

complete

GO:0006164

purine nucleotide biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0658

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

PMID:11967071

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of adenylosuccinate synthase

could be indirect

Protein

rspA

PMID:16606699

Experiment(s):EBI-1147633

Protein

accD

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753

LCMS(ID Probability):99.6

Protein

hns

PMID:19402753

LCMS(ID Probability):99.6

Protein

otsA

PMID:19402753

LCMS(ID Probability):99.6

Protein

yigB

PMID:19402753

LCMS(ID Probability):99.6

Small Molecule

ppGpp

PMID:10364182


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGNNVVVLGT QWGDEGKGKI VDLLTERAKY VVRYQGGHNA GHTLVINGEK TVLHLIPSGI
LRENVTSIIG NGVVLSPAAL MKEMKELEDR GIPVRERLLL SEACPLILDY HVALDNAREK
ARGAKAIGTT GRGIGPAYED KVARRGLRVG DLFDKETFAE KLKEVMEYHN FQLVNYYKAE
AVDYQKVLDD TMAVADILTS MVVDVSDLLD QARQRGDFVM FEGAQGTLLD IDHGTYPYVT
SSNTTAGGVA TGSGLGPRYV DYVLGILKAY STRVGAGPFP TELFDETGEF LCKQGNEFGA
TTGRRRRTGW LDTVAVRRAV QLNSLSGFCL TKLDVLDGLK EVKLCVAYRM PDGREVTTTP
LAADDWKGVE PIYETMPGWS ESTFGVKDRS GLPQAALNYI KRIEELTGVP IDIISTGPDR
TETMILRDPF DA
Length

432

Mol. Wt

47.345 kDa

pI

4.4 (calculated)

Extinction coefficient

45,840 - 46,340 (calc based on 16 Y, 4 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A7D4

Domain

4..425

PF00709 Adenylosuccinate synthetase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=purA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131999

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948695

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013672

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A7D4

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10790

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10790

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948695

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000781

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0783

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

7.16E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

309.901+/-2.204

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

1.0938+/-0.04869

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.380200308

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

940

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M76�2

PMID: 9298646

Protein

E. coli K-12 MG1655

11727

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

5661

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

6316

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

purA

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:4402690..4402730 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b4177 (EcoliWiki Page)

NCBI GEO profiles for purA

microarray

GenExpDB:b4177 (EcoliWiki Page)

Summary of data for purA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to purA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10790

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0783

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4177

EcoGene

EcoGene:EG10790

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000781

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013672

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000753 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000002094 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G57610 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000023424 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000018436 (score: 0.289)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030553 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00016509 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000027097 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000023248 (score: 0.330)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018101 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050417-337 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050417-338 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040516-18 (score: 0.638)
  • ZDB-GENE-040516-18 (score: 0.638)
  • ZDB-GENE-020419-28 (score: 0.616)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201565 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027493 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14431-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018960 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000017386 (score: 0.686)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000263828 (score: 1.000; bootstrap: 100%)
  • ENSP00000333019 (score: 0.549)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000000021 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000021756 (score: 0.553)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017092 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000008139 (score: 0.637)

From Inparanoid:20070104

Mus musculus

  • MGI:87947 (score: 1.000; bootstrap: 100%)
  • MGI:87948 (score: 0.650)

From Inparanoid:20070104

Oryza gramene

  • O24578 (score: 1.000; bootstrap: 100%)
  • O24396 (score: 0.801)
  • Q851S8 (score: 0.627)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000003684 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000011563 (score: 0.428)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005961 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL220W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC1443 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000145112 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000151036 (score: 0.638)
  • NEWSINFRUP00000138863 (score: 0.498)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020387001 (score: 1.000; bootstrap: 100%)
  • GSTENP00031532001 (score: 0.421)
  • GSTENP00032403001 (score: 0.404)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000031673 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Shigella flexneri

PURA

From SHIGELLACYC

E. coli O157

PURA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00709 Adenylosuccinate synthetase

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR11846:SF0

EcoCyc

EcoCyc:EG10790

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10790

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000781

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0783

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013672

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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