phoA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

phoA

Gene Synonym(s)

ECK0378, b0383, JW0374, psiA[1], psiA

Product Desc.

PhoA[2][3];

Component of alkaline phosphatase[2][3]

Alkaline phosphatase, periplasmic; binds Zn(II); dimeric[4]

Product Synonyms(s)

bacterial alkaline phosphatase[1], B0383[2][1], PsiA[2][1], PhoA[2][1] , ECK0378, JW0374, psiA, b0383

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): phoA-psiF[2], OP00071, phoA

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Arg22 is removed from the mature enzyme by Iap to form isozyme 3. Isozyme 2 is a heterodimer of isozymes 1 and 3 subunits. PhoA requires the reducing environment of the periplasm and DsbA for activity; cysteine bonds C190-C200 and C308-C358 are needed. PhoA fusions are used to indicate periplasmic location of hybrid proteins.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

phoA

Mnemonic

Phosphate

Synonyms

ECK0378, b0383, JW0374, psiA[1], psiA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

8.64 minutes 

MG1655: 400971..402386
<gbrowseImage> name=NC_000913:400971..402386 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 369393..370808
<gbrowseImage> name=NC_012967:369393..370808 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 303730..305145
<gbrowseImage> name=NC_012759:303730..305145 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 400971..402386
<gbrowseImage> name=NC_007779:400971..402386 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 340302..341717
<gbrowseImage> name=NC_010473:340302..341717 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

401034

Edman degradation

PMID:6273802
PMID:7022451


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

phoA(del) (Keio:JW0374)

deletion

deletion

PMID:16738554

Shigen

CGSC8552[5]

phoA

Deletion

phoA4(Am)

CGSC:4864

amber (UAG) mutation

phoA8(del)

PMID:6450745

CGSC:4917

phoA1

CGSC:6183

phoA64

CGSC:7365

phoA14(Oc)

CGSC:7852

ochre (UAA) mutation

phoA15

CGSC:7856

phoA16(Oc)

CGSC:7862

ochre (UAA) mutation

phoA12

CGSC:7896

phoA6(Oc)

CGSC:8130

ochre (UAA) mutation

phoA7(UGA)

CGSC:8134

opal (UGA) mutation

phoA10

CGSC:8135

phoA5(Am)

CGSC:10564

amber (UAG) mutation

phoA11(Oc)

CGSC:11686

ochre (UAA) mutation

phoA13(Am)

CGSC:14247

amber (UAG) mutation

phoA22

CGSC:14308

phoA37

CGSC:27543

phoA39

CGSC:27544

phoA42

CGSC:27545

phoA43

CGSC:27546

phoA44

CGSC:27547

phoA45

CGSC:27548

phoA47

CGSC:27549

phoA49

CGSC:27550

phoA532(del)

CGSC:72078

phoA748(del)::kan

PMID:16738554

CGSC:102350


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0374

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAACAAAGCACTATTGCACT

Primer 2:CCTTTCAGCCCCAGAGCGGCTTT

1A10

Kohara Phage

Genobase

PMID:3038334

6A12

Kohara Phage

Genobase

PMID:3038334

zai-3053::Tn10

Linked marker

CAG18091 = CGSC7336[5]

est. P1 cotransduction: 80% [6]
Synonyms:zaj-3053::Tn10 nnnCAG18091 also carries proC9999 (CGSC).

tsx-247::Tn10

Linked marker

CAG12148 = CGSC7337[5]

est. P1 cotransduction: 30% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10727

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10727

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000718

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945041

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0720

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001328

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PhoA

Synonyms

bacterial alkaline phosphatase[1], B0383[2][1], PsiA[2][1], PhoA[2][1] , ECK0378, JW0374, psiA, b0383

Product description

PhoA[2][3];

Component of alkaline phosphatase[2][3]

Alkaline phosphatase, periplasmic; binds Zn(II); dimeric[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0030288

outer membrane-bounded periplasmic space

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

PMID:3910843

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0004035

alkaline phosphatase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.1.3.1

F

Seeded from EcoCyc (v14.0)

complete

GO:0004035

alkaline phosphatase activity

PMID:1525473

TAS: Traceable Author Statement

F

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001952

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017849

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017850

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018299

P

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

PMID:3910843

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0016311

dephosphorylation

PMID:1525473

TAS: Traceable Author Statement

P

Seeded from EcoCyc (v14.0)

complete

GO:0030613

oxidoreductase activity, acting on phosphorus or arsenic in donors

PMID:15148399

IDA: Inferred from Direct Assay

F

Proposed reaction: H3PO3 + H20 -> H3PO4 + H2

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0016791

phosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001952

F

Seeded from EcoCyc (v14.0)

complete

GO:0016791

phosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018299

F

Seeded from EcoCyc (v14.0)

complete

GO:0033748

hydrogenase (acceptor) activity

PMID:15148399

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

PMID:3910843

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of alkaline phosphatase

could be indirect

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1136417
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

periplasm

From EcoCyc[3]

Periplasm

PMID:7022451

EchoLocation:phoA


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKQSTIALAL LPLLFTPVTK ARTPEMPVLE NRAAQGDITA PGGARRLTGD QTAALRDSLS
DKPAKNIILL IGDGMGDSEI TAARNYAEGA GGFFKGIDAL PLTGQYTHYA LNKKTGKPDY
VTDSAASATA WSTGVKTYNG ALGVDIHEKD HPTILEMAKA AGLATGNVST AELQDATPAA
LVAHVTSRKC YGPSATSEKC PGNALEKGGK GSITEQLLNA RADVTLGGGA KTFAETATAG
EWQGKTLREQ AQARGYQLVS DAASLNSVTE ANQQKPLLGL FADGNMPVRW LGPKATYHGN
IDKPAVTCTP NPQRNDSVPT LAQMTDKAIE LLSKNEKGFF LQVEGASIDK QDHAANPCGQ
IGETVDLDEA VQRALEFAKK EGNTLVIVTA DHAHASQIVA PDTKAPGLTQ ALNTKDGAVM
VMSYGNSEED SQEHTGSQLR IAAYGPHAAN VVGLTDQTDL FYTMKAALGL K
Length

471

Mol. Wt

49.438 kDa

pI

6.1 (calculated)

Extinction coefficient

32,890 - 33,390 (calc based on 11 Y, 3 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-21

UniProt Manual:Signal Peptides

UniProt:P00634

Domain

64..430

PF00245 Alkaline phosphatase

PMID:19920124

Domain

427..470

PF00245 Alkaline phosphatase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=phoA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:49176017

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945041

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001328

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P00634

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10727

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10727

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945041

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000718

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0720

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

89

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

190

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

174

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

phoA-psiF

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement. 

There is a pleiotropic decrease in expression of phoA with the addition of procaine. [7]

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:400951..400991 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0383 (EcoliWiki Page)

NCBI GEO profiles for phoA

microarray

GenExpDB:b0383 (EcoliWiki Page)

Summary of data for phoA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (400770..400979) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:G8[8]

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Notes

Accessions Related to phoA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10727

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0720

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0383

EcoGene

EcoGene:EG10727

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000718

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001328

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012212 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000016054 (score: 0.421)
  • ENSANGP00000029133 (score: 0.379)
  • ENSANGP00000004005 (score: 0.332)
  • ENSANGP00000002165 (score: 0.332)
  • ENSANGP00000015627 (score: 0.318)
  • ENSANGP00000016308 (score: 0.222)
  • ENSANGP00000020398 (score: 0.220)
  • ENSANGP00000029400 (score: 0.198)
  • ENSANGP00000015648 (score: 0.105)
  • ENSANGP00000028729 (score: 0.071)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000033694 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000008363 (score: 0.137)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000011783 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000005937 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000022269 (score: 0.428)
  • ENSBTAP00000038294 (score: 0.353)
  • ENSBTAP00000016406 (score: 0.340)
  • ENSBTAP00000016392 (score: 0.309)
  • ENSBTAP00000022731 (score: 0.066)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000016470 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000021891 (score: 0.538)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000013633 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000016851 (score: 0.380)
  • ENSCINP00000012509 (score: 0.377)
  • ENSCINP00000000365 (score: 0.376)
  • ENSCINP00000014537 (score: 0.330)
  • ENSCINP00000014541 (score: 0.155)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050327-78 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050327-78 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050626-55 (score: 0.498)
  • ZDB-GENE-050626-142 (score: 0.498)
  • ZDB-CDNA-040425-2039 (score: 0.251)
  • ZDB-GENE-040420-1 (score: 0.251)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231570 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0033423 (score: 1.000; bootstrap: 100%)
  • FBgn0035619 (score: 0.484)
  • FBgn0043791 (score: 0.354)
  • FBgn0037083 (score: 0.317)
  • FBgn0038845 (score: 0.313)
  • FBgn0035620 (score: 0.291)
  • FBgn0034712 (score: 0.234)
  • FBgn0034711 (score: 0.229)
  • FBgn0034710 (score: 0.215)
  • FBgn0032779 (score: 0.198)
  • FBgn0016123 (score: 0.187)
  • FBgn0030661 (score: 0.153)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10582-PA (score: 1.000; bootstrap: 100%)
  • GA18693-PA (score: 0.489)
  • GA10422-PA (score: 0.325)
  • GA14786-PA (score: 0.318)
  • GA20850-PA (score: 0.286)
  • GA17037-PA (score: 0.254)
  • GA17199-PA (score: 0.233)
  • GA13119-PA (score: 0.204)
  • GA20828-PA (score: 0.169)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000012662 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000295450 (score: 1.000; bootstrap: 100%)
  • ENSP00000295453 (score: 0.947)
  • ENSP00000295463 (score: 0.831)
  • ENSP00000343937 (score: 0.434)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000009167 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000022178 (score: 0.798)
  • ENSMMUP00000002960 (score: 0.446)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003150 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000019976 (score: 0.455)

From Inparanoid:20070104

Mus musculus

  • MGI:108009 (score: 1.000; bootstrap: 100%)
  • MGI:1924018 (score: 0.732)
  • MGI:87984 (score: 0.685)
  • MGI:87983 (score: 0.461)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000022289 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000022290 (score: 0.850)
  • ENSPTRP00000000520 (score: 0.368)
  • ENSPTRP00000022287 (score: 0.273)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026095 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000026190 (score: 0.708)
  • ENSRNOP00000026294 (score: 0.707)
  • ENSRNOP00000038169 (score: 0.654)
  • ENSRNOP00000019004 (score: 0.460)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR481C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC14F53c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000157676 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000141310 (score: 0.110)
  • NEWSINFRUP00000137169 (score: 0.102)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026721001 (score: 1.000; bootstrap: 100%)
  • GSTENP00022940001 (score: 0.507)
  • GSTENP00022912001 (score: 0.493)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000050243 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000049272 (score: 0.468)

From Inparanoid:20070104

Shigella flexneri

PHOA

From SHIGELLACYC

E. coli O157

PHOA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00245 Alkaline phosphatase

Pfam (EcoliWiki Page)

PF00245 Alkaline phosphatase

Panther (EcoliWiki Page)

PTHR11596:SF34

Superfamily (EcoliWiki Page)

SUPERFAMILY:53649

EcoCyc

EcoCyc:EG10727

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10727

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000718

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0720

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001328

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Garrett, S et al. (1983) Isolation and characterization of chain-terminating nonsense mutations in a porin regulator gene, envZ. J. Bacteriol. 156 62-9 PubMed
  8. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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