pgk:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

pgk

Gene Synonym(s)

ECK2922, b2926, JW2893[1], JW2893

Product Desc.

PGK[2][3]

Phosphoglycerate kinase[4]

Product Synonyms(s)

phosphoglycerate kinase[1], B2926[2][1], Pgk[2][1] , ECK2922, JW2893, b2926

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pgk[2], epd-pgk-fbaA[2], pgk-fbaA[2], epd-pgk[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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HT_Cmplx50_Mem: Pgk+Usg.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

pgk

Mnemonic

Phosphoglycerate kinase

Synonyms

ECK2922, b2926, JW2893[1], JW2893

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

66.16 minutes 

MG1655: 3070644..3069481
<gbrowseImage> name=NC_000913:3069481..3070644 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2958373..2957210
<gbrowseImage> name=NC_012967:2957210..2958373 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2956629..2957792
<gbrowseImage> name=NC_012759:2956629..2957792 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3071278..3070115
<gbrowseImage> name=NC_007779:3070115..3071278 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3164514..3163351
<gbrowseImage> name=NC_010473:3163351..3164514 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3069484

Edman degradation

PMID:9298646
PMID:9600841
PMID:9732527
PMID:9740056


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

pgk::Tn5KAN-I-SceI (FB20977)

Insertion at nt 880 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20977

does not contain pKD46

pgk::Tn5KAN-I-SceI (FB20978)

Insertion at nt 880 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20978

contains pKD46

pgk-2

PMID:368027

CGSC:8944


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2893

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCTCTGTAATTAAGATGACCGA

Primer 2:CCtTTCTTAGCGCGCTCTTCGAG

6C5

Kohara Phage

Genobase

PMID:3038334

1H10

Kohara Phage

Genobase

PMID:3038334

recD1901::Tn10

Linked marker

CAG12135 = CGSC7429[5]

est. P1 cotransduction: % [6]

speA210::Tn10

Linked marker

CAG12168 = CGSC7431[5]

est. P1 cotransduction: 57% [6]
Synonyms:zgd-210::Tn10, zgf-210::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10703

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10703

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000695

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947414

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0697

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009605

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Pgk

Synonyms

phosphoglycerate kinase[1], B2926[2][1], Pgk[2][1] , ECK2922, JW2893, b2926

Product description

PGK[2][3]

Phosphoglycerate kinase[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0004618

phosphoglycerate kinase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00145

F

Seeded from EcoCyc (v14.0)

complete

GO:0004618

phosphoglycerate kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001576

F

Seeded from EcoCyc (v14.0)

complete

GO:0004618

phosphoglycerate kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015824

F

Seeded from EcoCyc (v14.0)

complete

GO:0004618

phosphoglycerate kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015901

F

Seeded from EcoCyc (v14.0)

complete

GO:0004618

phosphoglycerate kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015911

F

Seeded from EcoCyc (v14.0)

complete

GO:0004618

phosphoglycerate kinase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.2.3

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00145

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00145

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001576

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015824

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015901

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015911

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0324

P

Seeded from EcoCyc (v14.0)

complete

GO:0016301

kinase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0418

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dnaK

PMID:15690043

Experiment(s):EBI-890008

Protein

eno

PMID:15690043

Experiment(s):EBI-890008

Protein

hfq

PMID:15690043

Experiment(s):EBI-890008

Protein

rne

PMID:15690043

Experiment(s):EBI-890008

Protein

rplI

PMID:15690043

Experiment(s):EBI-890008

Protein

rpsF

PMID:15690043

Experiment(s):EBI-890008

Protein

rpsN

PMID:15690043

Experiment(s):EBI-890008

Protein

rpsT

PMID:15690043

Experiment(s):EBI-890008

Protein

rpsT

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsF

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.6

Protein

hfq

PMID:19402753

LCMS(ID Probability):99.6

Protein

rne

PMID:19402753

LCMS(ID Probability):99.6

Protein

pnp

PMID:19402753

LCMS(ID Probability):99.6

Protein

eno

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSVIKMTDLD LAGKRVFIRA DLNVPVKDGK VTSDARIRAS LPTIELALKQ GAKVMVTSHL
GRPTEGEYNE EFSLLPVVNY LKDKLSNPVR LVKDYLDGVD VAEGELVVLE NVRFNKGEKK
DDETLSKKYA ALCDVFVMDA FGTAHRAQAS THGIGKFADV ACAGPLLAAE LDALGKALKE
PARPMVAIVG GSKVSTKLTV LDSLSKIADQ LIVGGGIANT FIAAQGHDVG KSLYEADLVD
EAKRLLTTCN IPVPSDVRVA TEFSETAPAT LKSVNDVKAD EQILDIGDAS AQELAEILKN
AKTILWNGPV GVFEFPNFRK GTEIVANAIA DSEAFSIAGG GDTLAAIDLF GIADKISYIS
TGGGAFLEFV EGKVLPAVAM LEERAKK
Length

387

Mol. Wt

41.118 kDa

pI

5.0 (calculated)

Extinction coefficient

14,440 - 14,815 (calc based on 6 Y, 1 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A799

Modification Site

196

phosphorylation site at T196

probability greater than 75%

PMID:17938405

Modification Site

192

phosphorylation site at S192

probability greater than 75%

PMID:17938405

Modification Site

199

phosphorylation site at T199

probability greater than 75%

PMID:17938405

Domain

5..373

PF00162 Phosphoglycerate kinase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=pgk taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130827

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947414

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009605

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A799

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10703

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10703

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947414

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000695

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0697

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.24E+05

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

564.396+/-4.067

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.69951+/-0.014

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.672828891

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

2990

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: Ml

PMID: 9298646

Protein

E. coli K-12 MG1655

25539

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

12205

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

18098

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

pgk

epd-pgk-fbaA

pgk-fbaA

epd-pgk

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3070624..3070664 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2926 (EcoliWiki Page)

NCBI GEO profiles for pgk

microarray

GenExpDB:b2926 (EcoliWiki Page)

Summary of data for pgk from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (3070542..3070750) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ05; Well:F12[7]

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Notes

Accessions Related to pgk Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10703

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0697

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2926

EcoGene

EcoGene:EG10703

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000695

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009605

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012460 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000030351 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G56190 (score: 1.000; bootstrap: 100%)
  • AT3G12780 (score: 0.862)
  • AT1G79550 (score: 0.591)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000026335 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000001187 (score: 0.724)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032991 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020185 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003135 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000025449 (score: 0.828)
  • ENSCAFP00000015504 (score: 0.612)
  • ENSCAFP00000009487 (score: 0.245)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004591 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2711 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3325 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3658 (score: 0.998)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191349 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031451 (score: 1.000; bootstrap: 100%)
  • FBgn0003075 (score: 0.396)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA22152-PA (score: 1.000; bootstrap: 100%)
  • GA16139-PA (score: 0.427)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000012878 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000218265 (score: 1.000; bootstrap: 100%)
  • ENSP00000305995 (score: 0.860)
  • ENSP00000339036 (score: 0.763)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000015734 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000024679 (score: 0.456)
  • ENSMMUP00000016910 (score: 0.337)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004988 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:3643179 (score: 1.000; bootstrap: 100%)
  • MGI:3648557 (score: 1.000; bootstrap: 100%)
  • MGI:97555 (score: 0.993)
  • MGI:97563 (score: 0.812)

From Inparanoid:20070104

Oryza gramene

  • Q6H6C7 (score: 1.000; bootstrap: 100%)
  • Q655T1 (score: 0.880)
  • P12783 (score: 0.867)
  • P12782 (score: 0.693)
  • Q84JX6 (score: 0.498)
  • Q850M5 (score: 0.457)
  • Q850M4 (score: 0.457)
  • Q850M6 (score: 0.454)
  • Q850M3 (score: 0.454)
  • Q850M2 (score: 0.454)
  • Q8LLS5 (score: 0.357)
  • Q8LLT3 (score: 0.354)
  • Q8L4S4 (score: 0.354)
  • Q8LLS6 (score: 0.352)
  • Q8LLT8 (score: 0.350)
  • Q8LLT6 (score: 0.350)
  • Q8LLT4 (score: 0.350)
  • Q8LLT2 (score: 0.350)
  • Q8LLT1 (score: 0.350)
  • Q8LLT0 (score: 0.350)
  • Q8LLS9 (score: 0.350)
  • Q8LLS7 (score: 0.350)
  • Q8L547 (score: 0.350)
  • Q8L546 (score: 0.350)
  • Q8LLT7 (score: 0.346)
  • Q8LLT5 (score: 0.346)
  • Q8LLS8 (score: 0.346)
  • Q8LLS4 (score: 0.328)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000031205 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000017980 (score: 0.531)
  • ENSPTRP00000044138 (score: 0.325)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000003390 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000038276 (score: 0.875)
  • ENSRNOP00000018177 (score: 0.819)
  • ENSRNOP00000045511 (score: 0.092)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YCR012W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC14F54c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000160355 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014631001 (score: 1.000; bootstrap: 100%)
  • GSTENP00000467001 (score: 0.235)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000016241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

G7V-672

From SHIGELLACYC

E. coli O157

G7E-3

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11406:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:53748

Pfam (EcoliWiki Page)

PF00162 Phosphoglycerate kinase

EcoCyc

EcoCyc:EG10703

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10703

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000695

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0697

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009605

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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