parE:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

parE

Gene Synonym(s)

ECK3021, b3030, JW2998, nfxD[1], nfxD

Product Desc.

topoisomerase IV subunit B[2][3];

Component of topoisomerase IV[3]

Topoisomerase IV, subunit B, ATP-dependent, type II; chromosome decatenase; relaxes positive supercoils much faster than negative supercoils; DNA unknotting activity; heterotetrameric[4]

Product Synonyms(s)

DNA topoisomerase IV, subunit B[1], B3030[2][1], NfxD[2][1], ParE[2][1] , ECK3021, JW2998, nfxD, b3030

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): parE[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Topo IV is stimulated by SeqA.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

parE

Mnemonic

Partition

Synonyms

ECK3021, b3030, JW2998, nfxD[1], nfxD

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

68.36 minutes 

MG1655: 3173418..3171526
<gbrowseImage> name=NC_000913:3171526..3173418 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3109568..3107676
<gbrowseImage> name=NC_012967:3107676..3109568 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3058674..3060566
<gbrowseImage> name=NC_012759:3058674..3060566 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3174052..3172160
<gbrowseImage> name=NC_007779:3172160..3174052 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3271163..3269271
<gbrowseImage> name=NC_010473:3269271..3271163 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

parEL445H

L445H

(in strain: DH161; quinolone- resistant)

Strain variation; seeded from UniProt:P20083

parEC316Y

C316Y

Sensitivity to

temperature sensitivity

PMID:12509418

identical to wt TopoIV in the superhelical DNA relaxation assay at permissive temperature

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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2998

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCACGCAAACTTATAACGCTGA

Primer 2:CCAACCTCAATCTCCGCCATGTC

17B2

Kohara Phage

Genobase

PMID:3038334

6B12

Kohara Phage

Genobase

PMID:3038334

metC162::Tn10

Linked marker

CAG18475 = CGSC7435[5]

est. P1 cotransduction: 46% [6]

tolC210::Tn10

Linked marker

CAG12184 = CGSC7437[5]

est. P1 cotransduction: 80% [6]

plex5BA-parEC

Plasmid Clone

  • IPTG-inducible Topo IV expression plasmid
  • PMID:10660569
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10687

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10687

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000680

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947501

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0681

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009950

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ParE

Synonyms

DNA topoisomerase IV, subunit B[1], B3030[2][1], NfxD[2][1], ParE[2][1] , ECK3021, JW2998, nfxD, b3030

Product description

topoisomerase IV subunit B[2][3];

Component of topoisomerase IV[3]

Topoisomerase IV, subunit B, ATP-dependent, type II; chromosome decatenase; relaxes positive supercoils much faster than negative supercoils; DNA unknotting activity; heterotetrameric[4]

EC number (for enzymes)
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Notes

More information about the Topo IV complex may be found on the Topoisomerase IV page.

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003916

DNA topoisomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0799

F

Seeded from EcoCyc (v14.0)

complete

GO:0003918

DNA topoisomerase (ATP-hydrolyzing) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001241

F

Seeded from EcoCyc (v14.0)

complete

GO:0003918

DNA topoisomerase (ATP-hydrolyzing) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002288

F

Seeded from EcoCyc (v14.0)

complete

GO:0003918

DNA topoisomerase (ATP-hydrolyzing) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005737

F

Seeded from EcoCyc (v14.0)

complete

GO:0003918

DNA topoisomerase (ATP-hydrolyzing) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013506

F

Seeded from EcoCyc (v14.0)

complete

GO:0003918

DNA topoisomerase (ATP-hydrolyzing) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013759

F

Seeded from EcoCyc (v14.0)

complete

GO:0003918

DNA topoisomerase (ATP-hydrolyzing) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013760

F

Seeded from EcoCyc (v14.0)

complete

GO:0030541

plasmid partitioning

PMID:8104339

IDA: Inferred from Direct Assay

P

complete

GO:0003918

DNA topoisomerase (ATP-hydrolyzing) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018522

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001241

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002288

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003594

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005737

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013506

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013759

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013760

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018522

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0051276

chromosome organization

PMID:18765793

IMP: Inferred from Mutant Phenotype

P

complete

GO:0005694

chromosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001241

C

Seeded from EcoCyc (v14.0)

complete

GO:0007062

sister chromatid cohesion

PMID:18765793

IMP: Inferred from Mutant Phenotype

P

complete

GO:0005694

chromosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002288

C

Seeded from EcoCyc (v14.0)

complete

GO:0005694

chromosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005737

C

Seeded from EcoCyc (v14.0)

complete

GO:0005694

chromosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013506

C

Seeded from EcoCyc (v14.0)

complete

GO:0005694

chromosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013759

C

Seeded from EcoCyc (v14.0)

complete

GO:0005694

chromosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013760

C

Seeded from EcoCyc (v14.0)

complete

GO:0006265

DNA topological change

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001241

P

Seeded from EcoCyc (v14.0)

complete

GO:0006265

DNA topological change

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002288

P

Seeded from EcoCyc (v14.0)

complete

GO:0006265

DNA topological change

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005737

P

Seeded from EcoCyc (v14.0)

complete

GO:0006265

DNA topological change

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013506

P

Seeded from EcoCyc (v14.0)

complete

GO:0006265

DNA topological change

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013759

P

Seeded from EcoCyc (v14.0)

complete

GO:0006265

DNA topological change

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013760

P

Seeded from EcoCyc (v14.0)

complete

GO:0006265

DNA topological change

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018522

P

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

GO:0046677

response to antibiotic

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0046

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of topoisomerase IV

could be indirect

Protein

ssb

PMID:15690043

Experiment(s):EBI-883317

Protein

ynbC

PMID:15690043

Experiment(s):EBI-883317

Protein

csgD

PMID:15690043

Experiment(s):EBI-883317

Protein

secA

PMID:15690043

Experiment(s):EBI-883317

Protein

yhcC

PMID:15690043

Experiment(s):EBI-883317

Protein

dhaK

PMID:15690043

Experiment(s):EBI-890620

Protein

ygbK

PMID:15690043

Experiment(s):EBI-890620

Protein

fucO

PMID:15690043

Experiment(s):EBI-890620

Protein

parC

PMID:15690043

Experiment(s):EBI-890620

Protein

rplD

PMID:15690043

Experiment(s):EBI-890620

Protein

rpsB

PMID:15690043

Experiment(s):EBI-890620

Protein

coaE

PMID:15690043

Experiment(s):EBI-890620

Protein

yebG

PMID:15690043

Experiment(s):EBI-890620

Protein

yidK

PMID:15690043

Experiment(s):EBI-890620

Protein

yqcE

PMID:15690043

Experiment(s):EBI-890620

Protein

nuoH

PMID:16606699

Experiment(s):EBI-1144593

Protein

yhcG

PMID:16606699

Experiment(s):EBI-1144593

Protein

rpsA

PMID:19402753

MALDI(Z-score):20.001460

Protein

rpsM

PMID:19402753

MALDI(Z-score):19.771818

Protein

rplA

PMID:19402753

MALDI(Z-score):31.982572

Protein

dhaK

PMID:19402753

LCMS(ID Probability):99.0

Protein

rpsD

PMID:19402753

MALDI(Z-score):36.982674

Protein

rpsC

PMID:19402753

MALDI(Z-score):35.528681

Protein

rplB

PMID:19402753

MALDI(Z-score):37.215033

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):17.445326

Protein

infC

PMID:19402753

MALDI(Z-score):49.787020

Protein

fimB

PMID:19402753

MALDI(Z-score):34.947666

Protein

coaE

PMID:19402753

LCMS(ID Probability):99.0

Protein

yebG

PMID:19402753

LCMS(ID Probability):99.0

Protein

panC

PMID:19402753

MALDI(Z-score):25.405580

Protein

dcm

PMID:19402753

LCMS(ID Probability):90.0 MALDI(Z-score):28.813132

Protein

yfcD

PMID:19402753

MALDI(Z-score):27.659565

Protein

ygbK

PMID:19402753

LCMS(ID Probability):99.0

Protein

fucO

PMID:19402753

LCMS(ID Probability):99.0

Protein

yqcE

PMID:19402753

LCMS(ID Probability):99.0

Protein

yidK

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTQTYNADAI EVLTGLEPVR RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HAKRVDVILH
ADQSLEVIDD GRGMPVDIHP EEGVPAVELI LCRLHAGGKF SNKNYQFSGG LHGVGISVVN
ALSKRVEVNV RRDGQVYNIA FENGEKVQDL QVVGTCGKRN TGTSVHFWPD ETFFDSPRFS
VSRLTHVLKA KAVLCPGVEI TFKDEINNTE QRWCYQDGLN DYLAEAVNGL PTLPEKPFIG
NFAGDTEAVD WALLWLPEGG ELLTESYVNL IPTMQGGTHV NGLRQGLLDA MREFCEYRNI
LPRGVKLSAE DIWDRCAYVL SVKMQDPQFA GQTKERLSSR QCAAFVSGVV KDAFILWLNQ
NVQAAELLAE MAISSAQRRM RAAKKVVRKK LTSGPALPGK LADCTAQDLN RTELFLVEGD
SAGGSAKQAR DREYQAIMPL KGKILNTWEV SSDEVLASQE VHDISVAIGI DPDSDDLSQL
RYGKICILAD ADSDGLHIAT LLCALFVKHF RALVKHGHVY VALPPLYRID LGKEVYYALT
EEEKEGVLEQ LKRKKGKPNV QRFKGLGEMN PMQLRETTLD PNTRRLVQLT IDDEDDQRTD
AMMDMLLAKK RSEDRRNWLQ EKGDMAEIEV
Length

630

Mol. Wt

70.243 kDa

pI

5.5 (calculated)

Extinction coefficient

66,350 - 67,600 (calc based on 15 Y, 8 W, and 10 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

27..172

PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

PMID:19920124

Domain

218..388

PF00204 DNA gyrase B

PMID:19920124

Domain

553..620

PF00986 DNA gyrase B subunit, carboxyl terminus

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=parE taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

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</protect>

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130926

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947501

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009950

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P20083

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10687

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10687

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947501

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000680

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0681

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.06E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

9.1+/-0.166

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.059989429

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

2414

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

381

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1342

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

parE

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3173398..3173438 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3030 (EcoliWiki Page)

NCBI GEO profiles for parE

microarray

GenExpDB:b3030 (EcoliWiki Page)

Summary of data for parE from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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<protect></protect>

Notes

Accessions Related to parE Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10687

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0681

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3030

EcoGene

EcoGene:EG10687

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000680

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009950

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000022005 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000027483 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000006030 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000025651 (score: 0.113)
  • YP_026241 (score: 0.278)

From Inparanoid:20070104

Caenorhabditis briggsae

  • YP_026241 (score: 1.000; bootstrap: 94%)
  • WBGene00037627 (score: 1.000; bootstrap: 100%)
  • WBGene00025743 (score: 0.309)

From Inparanoid:20070104

Caenorhabditis elegans

  • YP_026241 (score: 1.000; bootstrap: 93%)
  • WBGene00010785 (score: 1.000; bootstrap: 100%)
  • WBGene00022854 (score: 0.429)
  • WBGene00009309 (score: 0.315)
  • WBGene00021604 (score: 0.282)
  • WBGene00019876 (score: 0.221)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000023713 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000008554 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017040 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • YP_026241 (score: 1.000; bootstrap: 85%)
  • ZDB-GENE-030131-2453 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041212-101 (score: 0.985)

From Inparanoid:20070104

Dictyostelium discoideum

  • YP_026241 (score: 1.000; bootstrap: 97%)
  • DDB0214907 (score: 1.000; bootstrap: 100%)
  • DDB0231510 (score: 0.313)

From Inparanoid:20070104

Drosophila melanogaster

  • YP_026241 (score: 1.000; bootstrap: 100%)
  • FBgn0003732 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • YP_026241 (score: 1.000; bootstrap: 100%)
  • GA10169-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006239 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000018410 (score: 0.641)
  • YP_026241 (score: 0.270)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000264331 (score: 1.000; bootstrap: 100%)
  • ENSP00000269577 (score: 0.607)
  • YP_026241 (score: 0.269)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000009678 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000018703 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000016461 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:98791 (score: 1.000; bootstrap: 100%)
  • MGI:98790 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000025354 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000015554 (score: 0.516)
  • YP_026241 (score: 0.270)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000040257 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YP_026241 (score: 0.260)
  • YNL088W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • YP_026241 (score: 0.260)
  • SPBC1A43c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000139068 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000180720 (score: 0.658)
  • YP_026241 (score: 0.269)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00024101001 (score: 1.000; bootstrap: 100%)
  • GSTENP00033707001 (score: 0.593)
  • YP_026241 (score: 0.279)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000048725 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Shigella flexneri

PARE

From SHIGELLACYC

E. coli O157

PARE

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Pfam (EcoliWiki Page)

PF00204 DNA gyrase B

Pfam (EcoliWiki Page)

PF00986 DNA gyrase B subunit, carboxyl terminus

Panther (EcoliWiki Page)

PTHR10169:SF20

Superfamily (EcoliWiki Page)

SUPERFAMILY:54211

Superfamily (EcoliWiki Page)

SUPERFAMILY:55874

Superfamily (EcoliWiki Page)

SUPERFAMILY:56719

EcoCyc

EcoCyc:EG10687

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10687

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000680

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0681

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009950

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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