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Gene |

Product(s) |

Expression|

Evolution |

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Standard Name	opgB
Gene Synonym(s)	ECK4349, b4359, JW5794, yjjO, mdoB^[1], mdoB, yjjO
Product Desc.	phosphoglycerol transferase I^[2]^[3]
Product Synonyms(s)	phosphoglycerol transferase I^[1], B4359^[2]^[1], YjjO ^[2]^[1], MdoB^[2]^[1] , ECK4349, JW5794, mdoB, yjjO, b4359
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): opgB^[2]
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	opgB
Mnemonic	Osmoregulated periplasmic glucans
Synonyms	ECK4349, b4359, JW5794, yjjO, mdoB^[1], mdoB, yjjO
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	99.04 minutes, 99.04 minutes	MG1655: 4597464..4595173 <gbrowseImage> name=NC_000913:4595173..4597464 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
BW2952		NC_012759: 4533657..4535948 <gbrowseImage> name=NC_012759:4533657..4535948 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 4604121..4601830 <gbrowseImage> name=NC_007779:4601830..4604121 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 4643926..4641918 <gbrowseImage> name=NC_010473:4641918..4643926 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability	Comments
ΔmdoB (Keio:JW5794)	deletion	deletion	PMID:16738554	Shigen CGSC11581^[4]
mdoB202::Tn10	Insertion at 4,595,456 bp in MG1655 (NC_000913)		adapted from Nichols et al.^[5]	CAG18430 = CGSC7488^[4]	Synonyms: zjj-202::Tn10, zji-202::Tn10
mdoB202::Tn10			PMID:2952553 PMID:9829956	CGSC:4559
mdoB11			PMID:6094515	CGSC:7582
ΔmdoB757::kan			PMID:16738554	CGSC:101776
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW5794	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCTCAGAACTACTCTCTTTCGC Primer 2:CCaCCTTCACGTTCTACCACTTT
7C1	Kohara Phage	Genobase	PMID:3038334
8D1	Kohara Phage	Genobase	PMID:3038334
zjf-920::Tn10	Linked marker	CAG12019 = CGSC7484^[4]	est. P1 cotransduction: % ^[5] Synonyms:zjh-901::Tn10, zjg-920::Tn10
thrA34::Tn10	Linked marker	CAG18442 = CGSC7320^[4]	est. P1 cotransduction: 14% ^[5] Synonyms:thr-34::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG12591	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2476	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b4359
ECOL199310CYC (EcoliWiki Page)	ECOL199310CYC:C5438
EcoGene	EcoGene:EG12591	Escherichia coli str. K-12 substr. MG1655
ECOO157CYC (EcoliWiki Page)	ECOO157CYC:MDOB
CGSC (EcoliWiki Page)	CGSC:18169
ASAP	ASAP:ABE-0014297	Escherichia coli str. K-12 substr. MG1655
EcoCyc (EcoliWiki Page)	ECOCYC:EG12591	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:948888	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002326	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	OpgB
Synonyms	phosphoglycerol transferase I^[1], B4359^[2]^[1], YjjO ^[2]^[1], MdoB^[2]^[1] , ECK4349, JW5794, mdoB, yjjO, b4359
Product description	phosphoglycerol transferase I^[2]^[3]
EC number (for enzymes)	2.7.8.20^[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017849	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017850	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01070	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020881	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000917	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017849	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017850	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008484	sulfuric ester hydrolase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000917	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008960	phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01070	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008960	phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020881	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008960	phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:2.7.8.20	F	Seeded from EcoCyc (v14.0)	complete
	GO:0009250	glucan biosynthetic process	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01070	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009250	glucan biosynthetic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020881	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0812	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9909	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016740	transferase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0808	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
plasma membrane			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MLIYAWKAGR NTWWFAATLT VLGLFVVLNI TLFASDYFTG DGINDAVLYT LTNSLTGAGV SKYILPGIGI VLGLTAVFGA LGWILRRRRH HPHHFGYSLL ALLLALGSVD ASPAFRQITE LVKSQSRDGD PDFAAYYKEP SKTIPDPKLN LVYIYGESLE RTYFDNEAFP DLTPELGALK NEGLDFSHTQ QLPGTDYTIA GMVASQCGIP LFAPFEGNAS ASVSSFFPQN ICLGDILKNS GYQNYFVQGA NLRFAGKDVF LKSHGFDHLY GSEELKSVVA DPHYRNDWGF YDDTVLDEAW KKFEELSRSG QRFSLFTLTV DTHHPDGFIS RTCNRKKYDF DGKPNQSFSA VSCSQENIAT FINKIKASPW FKDTVIVVSS DHLAMNNTAW KYLNKQDRNN LFFVIRGDKP QQETLAVKRN TMDNGATVLD ILGGDNYLGL GRSSLSGQSM SEIFLNIKEK TLAWKPDIIR LWKFPKEMKE FTIDQQKNMI AFSGSHFRLP LLLRVSDKRV EPLPESEYSA PLRFQLADFA PRDNFVWVDR CYKMAQLWAP ELALSTDWCV SQGQLGGQQI VQHVDKTTWQ GKTAFKDTVI DMARYKGNVD TLKIVDNDIR YKADSFIFNV AGAPEEVKQF SGISRPESWG RWSNAQLGDE VKIEYKHPLP KKFDLVITAK AYGNNASRPI PVRVGNEEQT LVLGNEVTTT TLHFDNPTDA DTLVIVPPEP VSTNEGNILG HSPRKLGIGM VEIKVVEREG
Length	750
Mol. Wt	84.117 kDa
pI	6.6 (calculated)
Extinction coefficient	125,250 - 126,000 (calc based on 25 Y, 16 W, and 6 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	162..561	PF00884 Sulfatase		PMID:19920124
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<motif_map/>

Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=mdoB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:90111741	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:948888	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0014297	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P39401	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG12591	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG12591	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:948888	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002326	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2476	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Reference(s)
Protein	E. coli K-12 MC4100	1.02E+02	molecules/cell	Medium: median data from rich and minimal media Temperature (°C): 37 Doubling time (min): Growth Rate(min): Growth phase: other:	emPAI	PMID:18304323
Protein	E. coli K-12 MG1655	450	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	84	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	228	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
mdoB
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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:4597444..4597484 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b4359 (EcoliWiki Page)	NCBI GEO profiles for mdoB
microarray	GenExpDB:b4359 (EcoliWiki Page)	Summary of data for mdoB from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
	GFP Fusion	Intergenic region (4596898..4597297) fused to gfpmut2.	OpenBioSystems	GFP fusion described in Zaslaver, et al. Plate:109-AZ11; Well:C11^[6]
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Notes

Accessions Related to opgB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG12591	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2476	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b4359
EcoGene	EcoGene:EG12591	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002326	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0014297	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Shigella flexneri	MDOB	From SHIGELLACYC
E. coli O157	MDOB	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00884 Sulfatase
Superfamily (EcoliWiki Page)	SUPERFAMILY:53649
EcoCyc	EcoCyc:EG12591	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG12591	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002326	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2476	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0014297	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 ^4.3 CGSC: The Coli Genetics Stock Center
↑ ^5.0 ^5.1 ^5.2 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

opgB:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to opgB Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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