nuoL:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

nuoL

Gene Synonym(s)

ECK2272, b2278, JW2273[1], JW2273

Product Desc.

NuoL[2][3];

Component of NADH dehydrogenase I[2][3]

NADH:ubiquinone oxidoreductase subunit L, complex I; NADH dehydrogenase I; NuoL facilitates the uptake of Na(+), is homologus to antiporters, and is implicated in proton pumping[4]

Product Synonyms(s)

NADH:ubiquinone oxidoreductase, membrane subunit L[1], B2278[2][1], NuoL[2][1] , ECK2272, JW2273, b2278

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nuoABCEFGHIJKLMN[2], nuo1-14

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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NuoL and NuoM are located at the distal end of the membrane arm. the redox centers are in the peripheral arm.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

nuoL

Mnemonic

NADH:ubiquinone oxidoreductase

Synonyms

ECK2272, b2278, JW2273[1], JW2273

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

51.54 minutes, 51.54 minutes 

MG1655: 2393068..2391227
<gbrowseImage> name=NC_000913:2391227..2393068 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2338637..2336796
<gbrowseImage> name=NC_012967:2336796..2338637 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2277032..2278873
<gbrowseImage> name=NC_012759:2277032..2278873 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2399716..2397875
<gbrowseImage> name=NC_007779:2397875..2399716 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2484833..2482992
<gbrowseImage> name=NC_010473:2482992..2484833 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

nuoL(del) (Keio:JW2273)

deletion

deletion

PMID:16738554

Shigen
CGSC9832[5]

nuoL::Tn5KAN-2 (FB20735)

Insertion at nt 454 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20735

contains pKD46

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire D-Galactose

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire b-Methyl-D-glucoside

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire a-D-Glucose-6-phosphate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire D-Galacturonate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire DL-Lactate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire Glucuronamide

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanyl-glycine

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire Glycyl-L-aspartate

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938

nuoL(del)::kan

deletion

Biolog:respiration

unable to respire Uridine

PMID:16095938

nuoL760(del)::kan

PMID:16738554

CGSC:102158

nuoL760(del)::FRT

deletion

Mutagenesis rate

Decrease in stressed induced mutagenesis (SIM)

PMID:23224554

Parent Strain: SMR4562 Experimental Strain: SMR12239

The mutation conferred a strong decrease in SIM with a reduction of mutant frequency by 90 % of the wild type. See Figure S3 for full experimental data.

SMR4562 yiaG-yfp FRTcatFRT nuoL760(del)::FRTKanFRT

deletion

SigmaS

Decrease in SigmaS activity

PMID:23224554

Parental Strain: SMR10582 Experimental Strain: SMR14273

See table S8 for full experimental results.

CAG45114 nuoL760(del)::FRTKanFRT

deletion

SigmaE activity

decrease in sigmaE activity

PMID:23224554

Parental Strain: CAG45114 Experimental Strain: SMR15354

See table S11 for experimental data.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2273

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAACATGCTTGCCTTAACCAT

Primer 2:CCACGCAGTACCATCAACAGTGC

4C8

Kohara Phage

Genobase

PMID:3038334

E9B9

Kohara Phage

Genobase

PMID:3038334

zfb-223::Tn10

Linked marker

CAG18484 = CGSC7406[5]

est. P1 cotransduction: 94% [6]
Synonyms:zej-223::Tn10

zfd-1::Tn10

Linked marker

CAG18467 = CGSC7408[5]

est. P1 cotransduction: % [6]
Synonyms:zfb-1::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12092

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12092

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001997

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945540

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2016

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007532

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

NuoL

Synonyms

NADH:ubiquinone oxidoreductase, membrane subunit L[1], B2278[2][1], NuoL[2][1] , ECK2272, JW2273, b2278

Product description

NuoL[2][3];

Component of NADH dehydrogenase I[2][3]

NADH:ubiquinone oxidoreductase subunit L, complex I; NADH dehydrogenase I; NuoL facilitates the uptake of Na(+), is homologus to antiporters, and is implicated in proton pumping[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0008137

NADH dehydrogenase (ubiquinone) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001516

F

Seeded from EcoCyc (v14.0)

complete

GO:0008137

NADH dehydrogenase (ubiquinone) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001750

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

PMID:7607227

IDA: Inferred from Direct Assay

C

The NADH dehydrogenase I complex fractionates with cytoplasmic membranes.

complete

GO:0008137

NADH dehydrogenase (ubiquinone) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003916

F

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0003954

NADH dehydrogenase activity

PMID:3122832

IDA: Inferred from Direct Assay

F

Purified NADH dehydrogenase I in membrane vesicles can oxidize NADH.

complete

GO:0030964

NADH dehydrogenase complex

PMID:7607227

IDA: Inferred from Direct Assay

C

E. coli NADH dehydrogenase I was purified and the subunits separated by SDS-PAGE. These seven subunits were not recovered from the gel in sufficient amounts to allow Edman degradation. The polypeptides were assigned to their respective genes based on their apparent molecular masses.

complete

GO:0008137

NADH dehydrogenase (ubiquinone) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003945

F

Seeded from EcoCyc (v14.0)

complete

GO:0008137

NADH dehydrogenase (ubiquinone) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018393

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0042773

ATP synthesis coupled electron transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001516

P

Seeded from EcoCyc (v14.0)

complete

GO:0042773

ATP synthesis coupled electron transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001750

P

Seeded from EcoCyc (v14.0)

complete

GO:0042773

ATP synthesis coupled electron transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003916

P

Seeded from EcoCyc (v14.0)

complete

GO:0042773

ATP synthesis coupled electron transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003945

P

Seeded from EcoCyc (v14.0)

complete

GO:0042773

ATP synthesis coupled electron transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018393

P

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0874

F

Seeded from EcoCyc (v14.0)

complete

GO:0050136

NADH dehydrogenase (quinone) activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.6.99.5

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001516

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001750

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003916

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003945

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018393

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of NADH dehydrogenase I

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized to the periplasm with 16 predicted transmembrane domains

Daley et al. (2005) [7]

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNMLALTIIL PLIGFVLLAF SRGRWSENVS AIVGVGSVGL AALVTAFIGV DFFANGEQTY
SQPLWTWMSV GDFNIGFNLV LDGLSLTMLS VVTGVGFLIH MYASWYMRGE EGYSRFFAYT
NLFIASMVVL VLADNLLLMY LGWEGVGLCS YLLIGFYYTD PKNGAAAMKA FVVTRVGDVF
LAFALFILYN ELGTLNFREM VELAPAHFAD GNNMLMWATL MLLGGAVGKS AQLPLQTWLA
DAMAGPTPVS ALIHAATMVT AGVYLIARTH GLFLMTPEVL HLVGIVGAVT LLLAGFAALV
QTDIKRVLAY STMSQIGYMF LALGVQAWDA AIFHLMTHAF FKALLFLASG SVILACHHEQ
NIFKMGGLRK SIPLVYLCFL VGGAALSALP LVTAGFFSKD EILAGAMANG HINLMVAGLV
GAFMTSLYTF RMIFIVFHGK EQIHAHAVKG VTHSLPLIVL LILSTFVGAL IVPPLQGVLP
QTTELAHGSM LTLEITSGVV AVVGILLAAW LWLGKRTLVT SIANSAPGRL LGTWWYNAWG
FDWLYDKVFV KPFLGIAWLL KRDPLNSMMN IPAVLSRFAG KGLLLSENGY LRWYVASMSI
GAVVVLALLM VLR
Length

613

Mol. Wt

66.439 kDa

pI

8.4 (calculated)

Extinction coefficient

116,310 - 116,685 (calc based on 19 Y, 16 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

133..407

PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains

PMID:19920124

Domain

61..122

PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus

PMID:19920124

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<motif_map/>

tmhmm.php?gene=nuoL&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=nuoL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130213

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945540

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007532

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P33607

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12092

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12092

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945540

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001997

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2016

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

1634

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

510

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

645

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

nuoABCEFGHIJKLMN

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2393048..2393088 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2278 (EcoliWiki Page)

NCBI GEO profiles for nuoL

microarray

GenExpDB:b2278 (EcoliWiki Page)

Summary of data for nuoL from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to nuoL Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12092

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2016

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2278

EcoGene

EcoGene:EG12092

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001997

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007532

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000001705 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000031805 (score: 0.293)
  • ENSAPMP00000020683 (score: 0.228)
  • ENSAPMP00000017344 (score: 0.150)
  • ENSAPMP00000028865 (score: 0.126)
  • ENSAPMP00000028230 (score: 0.108)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042913 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010967 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-011205-12 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201619 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000029278 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000354813 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:102496 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5IWR1 (score: 1.000; bootstrap: 62%)
  • Q33054 (score: 0.906)
  • Q6QY40 (score: 0.884)
  • Q6QXX7 (score: 0.884)
  • Q6ENB0 (score: 0.884)
  • P46620 (score: 0.884)
  • Q6L3E3 (score: 0.879)
  • Q6ENQ0 (score: 0.879)
  • Q95H46 (score: 0.877)
  • Q5IWR4 (score: 0.877)
  • Q5IWR5 (score: 0.867)
  • Q5IWR2 (score: 0.864)
  • Q5IWR3 (score: 0.863)
  • Q9T2A9 (score: 0.859)
  • P12129 (score: 0.855)
  • Q31800 (score: 0.855)
  • Q9T2A7 (score: 0.853)
  • Q9T2A5 (score: 0.852)
  • Q9T2A3 (score: 0.852)
  • Q33053 (score: 0.850)
  • Q32027 (score: 0.850)
  • Q9T2A4 (score: 0.849)
  • Q32875 (score: 0.849)
  • Q9T2A1 (score: 0.848)
  • Q9T2B0 (score: 0.847)
  • Q9T299 (score: 0.847)
  • Q9T296 (score: 0.847)
  • Q9T2A6 (score: 0.847)
  • Q32334 (score: 0.847)
  • Q32142 (score: 0.846)
  • Q9T2A2 (score: 0.845)
  • Q31926 (score: 0.845)
  • Q9T2A8 (score: 0.842)
  • Q5IWR7 (score: 0.842)
  • Q32843 (score: 0.842)
  • Q8MD58 (score: 0.841)
  • Q9T2A0 (score: 0.840)
  • Q32844 (score: 0.840)
  • Q31863 (score: 0.840)
  • Q32747 (score: 0.838)
  • Q32045 (score: 0.838)
  • Q8MD63 (score: 0.837)
  • Q31958 (score: 0.837)
  • Q31812 (score: 0.837)
  • Q8MD61 (score: 0.837)
  • Q9T297 (score: 0.836)
  • Q8MD65 (score: 0.836)
  • Q8MD56 (score: 0.836)
  • Q32020 (score: 0.836)
  • Q8MD59 (score: 0.835)
  • Q8MD55 (score: 0.834)
  • Q32173 (score: 0.834)
  • Q32780 (score: 0.833)
  • Q32589 (score: 0.832)
  • Q32440 (score: 0.832)
  • Q8MD60 (score: 0.831)
  • Q31878 (score: 0.831)
  • Q33214 (score: 0.831)
  • Q8MD64 (score: 0.831)
  • Q9T298 (score: 0.830)
  • Q8WJZ6 (score: 0.830)
  • Q8MD66 (score: 0.829)
  • Q8MD52 (score: 0.829)
  • Q32554 (score: 0.829)
  • Q32740 (score: 0.829)
  • Q71U73 (score: 0.828)
  • Q33066 (score: 0.828)
  • Q8MD54 (score: 0.827)
  • Q8MD53 (score: 0.827)
  • Q9XQ60 (score: 0.827)
  • Q8WJX7 (score: 0.827)
  • Q32021 (score: 0.827)
  • Q9XQ59 (score: 0.826)
  • Q33177 (score: 0.826)
  • Q9XQ46 (score: 0.825)
  • Q9XQ50 (score: 0.824)
  • Q95AN0 (score: 0.824)
  • Q8WJZ5 (score: 0.824)
  • Q33305 (score: 0.824)
  • Q8WJZ4 (score: 0.824)
  • Q8WJY9 (score: 0.824)
  • Q33291 (score: 0.823)
  • Q33012 (score: 0.823)
  • Q9XQ27 (score: 0.823)
  • Q8WJZ3 (score: 0.822)
  • Q8MD62 (score: 0.822)
  • Q95GG7 (score: 0.821)
  • Q32824 (score: 0.821)
  • Q32200 (score: 0.821)
  • Q9XQ55 (score: 0.820)
  • Q9XQ28 (score: 0.819)
  • Q8WJY6 (score: 0.819)
  • Q31781 (score: 0.819)
  • Q32172 (score: 0.818)
  • Q32880 (score: 0.818)
  • Q9XQ26 (score: 0.817)
  • Q9XQ36 (score: 0.817)
  • Q8WJY1 (score: 0.817)
  • Q32532 (score: 0.817)
  • Q32522 (score: 0.817)
  • Q33111 (score: 0.816)
  • Q50DK6 (score: 0.815)
  • Q31806 (score: 0.815)
  • Q33025 (score: 0.815)
  • Q50DK5 (score: 0.814)
  • Q9XQ47 (score: 0.814)
  • Q8WJX9 (score: 0.814)
  • Q8WJX8 (score: 0.814)
  • Q9XQ52 (score: 0.813)
  • Q9XQ33 (score: 0.813)
  • Q32547 (score: 0.812)
  • Q9XQ32 (score: 0.812)
  • Q95AM9 (score: 0.812)
  • Q95GE1 (score: 0.811)
  • Q9XQ57 (score: 0.811)
  • Q95GF3 (score: 0.810)
  • Q8WJX6 (score: 0.810)
  • Q9XQ31 (score: 0.809)
  • Q6IUU1 (score: 0.809)
  • Q95GE8 (score: 0.809)
  • Q8WJY8 (score: 0.809)
  • Q8WJY2 (score: 0.809)
  • Q6IUT9 (score: 0.809)
  • Q8WJZ1 (score: 0.808)
  • Q9XQ34 (score: 0.808)
  • Q95GA2 (score: 0.808)
  • Q9XQ21 (score: 0.807)
  • Q9TMV8 (score: 0.807)
  • Q95GD7 (score: 0.807)
  • Q31844 (score: 0.807)
  • Q95GD0 (score: 0.806)
  • Q95GA1 (score: 0.806)
  • Q9XQ54 (score: 0.806)
  • Q95GF4 (score: 0.805)
  • Q6IUU0 (score: 0.805)
  • Q95GA0 (score: 0.804)
  • Q9XQ58 (score: 0.803)
  • Q95GE9 (score: 0.802)
  • Q95GB5 (score: 0.802)
  • Q9XQ61 (score: 0.801)
  • Q9XQ48 (score: 0.801)
  • Q95GC3 (score: 0.801)
  • Q95GC7 (score: 0.800)
  • Q9XQ30 (score: 0.800)
  • Q9XQ41 (score: 0.800)
  • Q95GD1 (score: 0.799)
  • Q95GC0 (score: 0.799)
  • Q8WJY7 (score: 0.799)
  • Q9XQ53 (score: 0.798)
  • Q9XQ45 (score: 0.798)
  • Q538B0 (score: 0.798)
  • Q95GG1 (score: 0.798)
  • Q7YMP4 (score: 0.798)
  • Q7YMP3 (score: 0.798)
  • Q95GF8 (score: 0.798)
  • Q95GG3 (score: 0.797)
  • Q95G92 (score: 0.797)
  • Q9XQ49 (score: 0.797)
  • Q9XQ38 (score: 0.796)
  • Q95GB1 (score: 0.796)
  • Q7YMQ5 (score: 0.796)
  • Q7YMQ6 (score: 0.796)
  • Q7YMP5 (score: 0.796)
  • Q95GG2 (score: 0.795)
  • Q85XV4 (score: 0.795)
  • Q95GB9 (score: 0.795)
  • Q9XQ29 (score: 0.794)
  • Q85XW0 (score: 0.794)
  • Q7YMQ7 (score: 0.794)
  • Q7YMQ3 (score: 0.794)
  • Q7YMP9 (score: 0.794)
  • Q7YMP8 (score: 0.794)
  • Q7YMQ8 (score: 0.794)
  • Q9XQ35 (score: 0.793)
  • Q95GD3 (score: 0.793)
  • Q85XU6 (score: 0.793)
  • Q32143 (score: 0.793)
  • Q7YMQ2 (score: 0.793)
  • Q7YMQ1 (score: 0.793)
  • Q7YMQ0 (score: 0.793)
  • Q7YMP2 (score: 0.793)
  • Q7YMP7 (score: 0.793)
  • Q9XQ44 (score: 0.792)
  • Q9XQ51 (score: 0.792)
  • Q9XQ24 (score: 0.791)
  • Q95GB7 (score: 0.791)
  • Q8WJY4 (score: 0.791)
  • Q85XT3 (score: 0.791)
  • Q7YMQ4 (score: 0.791)
  • Q7YMP6 (score: 0.791)
  • Q95GF5 (score: 0.791)
  • Q85XV8 (score: 0.791)
  • Q9XQ42 (score: 0.790)
  • Q85XW4 (score: 0.790)
  • Q9XQ20 (score: 0.790)
  • Q95GE4 (score: 0.790)
  • Q85XX1 (score: 0.790)
  • Q95GC5 (score: 0.789)
  • Q95GA9 (score: 0.789)
  • Q8SLI9 (score: 0.789)
  • Q95GB8 (score: 0.787)
  • Q85XX3 (score: 0.787)
  • Q85XT2 (score: 0.787)
  • Q8WJY0 (score: 0.786)
  • Q95G95 (score: 0.786)
  • Q8WJZ8 (score: 0.786)
  • Q9XQ56 (score: 0.785)
  • Q85XX8 (score: 0.785)
  • Q9XQ39 (score: 0.784)
  • Q85XV1 (score: 0.784)
  • Q85XV0 (score: 0.784)
  • Q95GB4 (score: 0.783)
  • Q8WJZ7 (score: 0.783)
  • Q95GF2 (score: 0.783)
  • Q85XU2 (score: 0.783)
  • Q85XW8 (score: 0.782)
  • Q85XT8 (score: 0.782)
  • Q95GF0 (score: 0.782)
  • Q95GG6 (score: 0.781)
  • Q85XX4 (score: 0.781)
  • Q95GE7 (score: 0.781)
  • Q95GC1 (score: 0.780)
  • Q85XW3 (score: 0.780)
  • Q85XU9 (score: 0.779)
  • Q9XQ40 (score: 0.779)
  • Q85XT7 (score: 0.778)
  • Q95GE5 (score: 0.778)
  • Q95GB6 (score: 0.778)
  • Q85XW2 (score: 0.777)
  • Q8WJY3 (score: 0.777)
  • Q95GG0 (score: 0.776)
  • Q8WJY5 (score: 0.775)
  • Q85XV2 (score: 0.775)
  • Q9XQ23 (score: 0.775)
  • Q95GC6 (score: 0.772)
  • Q85XT5 (score: 0.772)
  • Q95GF6 (score: 0.772)
  • Q8WJZ0 (score: 0.771)
  • Q85XX5 (score: 0.769)
  • Q85XT0 (score: 0.768)
  • Q9XQ43 (score: 0.767)
  • Q95GD8 (score: 0.767)
  • Q95GD4 (score: 0.767)
  • Q95G93 (score: 0.767)
  • Q85XW1 (score: 0.767)
  • Q95GE3 (score: 0.766)
  • Q8WJZ2 (score: 0.765)
  • Q95GD5 (score: 0.764)
  • Q95GG5 (score: 0.763)
  • Q95GA5 (score: 0.762)
  • Q95G98 (score: 0.762)
  • Q85XT1 (score: 0.761)
  • Q85XX7 (score: 0.760)
  • Q9XQ22 (score: 0.760)
  • Q9XQ25 (score: 0.760)
  • Q85XV5 (score: 0.759)
  • Q85XU0 (score: 0.759)
  • Q50DK7 (score: 0.758)
  • Q95GA4 (score: 0.758)
  • Q85XU1 (score: 0.758)
  • Q95GF7 (score: 0.757)
  • Q85XV6 (score: 0.756)
  • Q95GD6 (score: 0.754)
  • Q85XU5 (score: 0.754)
  • Q95G99 (score: 0.754)
  • Q9TMV6 (score: 0.753)
  • Q85XX2 (score: 0.751)
  • Q9XQ37 (score: 0.751)
  • Q85XW5 (score: 0.751)
  • Q95GF1 (score: 0.748)
  • Q95GB2 (score: 0.748)
  • Q95GE0 (score: 0.745)
  • Q85XW6 (score: 0.745)
  • Q95GG4 (score: 0.743)
  • Q95GA8 (score: 0.743)
  • Q85XT9 (score: 0.743)
  • Q95GA3 (score: 0.740)
  • Q95GB0 (score: 0.740)
  • Q85XT6 (score: 0.734)
  • Q85XV9 (score: 0.733)
  • Q85XT4 (score: 0.733)
  • Q8MD57 (score: 0.730)
  • Q85XW7 (score: 0.728)
  • Q95G91 (score: 0.727)
  • Q95GA7 (score: 0.725)
  • Q95GC4 (score: 0.723)
  • Q85XU8 (score: 0.721)
  • Q85XW9 (score: 0.720)
  • Q85XV3 (score: 0.720)
  • Q95GE2 (score: 0.717)
  • Q85XX6 (score: 0.712)
  • Q95GA6 (score: 0.711)
  • Q85XU3 (score: 0.710)
  • Q85XX0 (score: 0.703)
  • Q95GB3 (score: 0.703)
  • Q95G96 (score: 0.702)
  • Q95GC2 (score: 0.700)
  • Q85XV7 (score: 0.699)
  • Q95G94 (score: 0.692)
  • Q95GD2 (score: 0.690)
  • Q85XU4 (score: 0.687)
  • Q95G90 (score: 0.681)
  • Q95GC9 (score: 0.668)
  • Q95GE6 (score: 0.664)
  • Q95GF9 (score: 0.648)
  • Q85XU7 (score: 0.594)
  • Q95GC8 (score: 0.546)
  • Q95GD9 (score: 0.462)
  • Q95G97 (score: 0.444)
  • Q9TMV4 (score: 0.282)
  • Q9MS45 (score: 0.067)
  • Q9MS23 (score: 0.067)
  • Q9MS22 (score: 0.067)
  • Q9MS44 (score: 0.066)
  • Q9MS43 (score: 0.066)
  • Q9MS41 (score: 0.066)
  • Q9MS40 (score: 0.066)
  • Q9MS39 (score: 0.066)
  • Q9MS38 (score: 0.066)
  • Q9MS33 (score: 0.066)
  • Q9MS32 (score: 0.066)
  • Q9MS31 (score: 0.066)
  • Q9MS29 (score: 0.066)
  • Q9MS28 (score: 0.066)
  • Q9MS27 (score: 0.066)
  • Q9MS26 (score: 0.066)
  • Q9MS25 (score: 0.066)
  • Q9MS24 (score: 0.066)
  • Q9MS21 (score: 0.066)
  • Q9MS14 (score: 0.066)
  • Q9MS12 (score: 0.066)
  • Q9MS11 (score: 0.066)
  • Q9MS42 (score: 0.066)
  • Q9MS19 (score: 0.065)
  • Q9MS37 (score: 0.064)
  • Q9MS36 (score: 0.064)
  • Q9MS30 (score: 0.064)
  • Q9MS20 (score: 0.064)
  • Q9MS18 (score: 0.063)
  • Q5DMA5 (score: 0.062)
  • Q9MS16 (score: 0.061)
  • Q9MS47 (score: 0.061)
  • Q5DMB0 (score: 0.061)
  • Q5DMA9 (score: 0.061)
  • Q5DMA6 (score: 0.061)
  • Q5DMA4 (score: 0.061)
  • Q5DMA3 (score: 0.061)
  • Q5DMA2 (score: 0.061)
  • Q9MS48 (score: 0.059)
  • Q9MS35 (score: 0.058)
  • Q9MS34 (score: 0.058)
  • Q9MEA7 (score: 0.058)
  • Q5DMA8 (score: 0.058)
  • O98466 (score: 0.058)
  • O98464 (score: 0.058)
  • O98468 (score: 0.057)
  • Q5DMC4 (score: 0.057)
  • Q5DMC1 (score: 0.057)
  • Q5DMA1 (score: 0.056)
  • O98469 (score: 0.056)
  • O98467 (score: 0.056)
  • Q5DMC3 (score: 0.056)
  • Q5DMC2 (score: 0.056)
  • Q9XQV6 (score: 0.055)
  • Q9XQV5 (score: 0.055)
  • Q5DMB5 (score: 0.055)
  • Q5DMB2 (score: 0.055)
  • Q5DMB9 (score: 0.055)
  • Q5DMB8 (score: 0.055)
  • Q5DMB7 (score: 0.055)
  • O98463 (score: 0.055)
  • Q9MS17 (score: 0.054)
  • Q9ZXX3 (score: 0.054)
  • Q5DMB3 (score: 0.054)
  • Q5DMB1 (score: 0.054)
  • O98465 (score: 0.054)
  • Q5DMC5 (score: 0.053)
  • Q5DMA0 (score: 0.053)
  • Q9MU70 (score: 0.051)
  • Q9XQV4 (score: 0.050)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000044573 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000049331 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NUOL

From SHIGELLACYC

E. coli O157

NUOL

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus

Pfam (EcoliWiki Page)

PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains

EcoCyc

EcoCyc:EG12092

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12092

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001997

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2016

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007532

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

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