nuoC:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

nuoC

Gene Synonym(s)

ECK2280, b2286, JW5375, nuoCD, nuoD[1], nuoD

Product Desc.

NuoC[2][3];

Component of connecting fragment of NADH dehydrogenase I[3]; NADH dehydrogenase I[2][3]

NADH:ubiquinone oxidoreductase subunit C, complex I; NADH dehydrogenase I[4]

Product Synonyms(s)

NADH:ubiquinone oxidoreductase, chain C,D[1], B2286[2][1], NuoD[2][1], NuoCD[2][1], NuoC[2][1] , ECK2280, JW5375, nuoCD, nuoD, b2286

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nuoABCEFGHIJKLMN[2], nuo1-14

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Leif (1995) find the starting amino acids at codon +4 (MVNN), in conflict with the more recent data of David (2002), which does not include these 4 amino acids and the initial Met. Alignment with Yersinia NuoC supports the second ATG annotated here. The reason for the discrepancy is not known as both used native protein preparations, although the protein band sequenced by Leif et al. was not the correct MW for the revised, fused NuoCD protein sequence. HT_Cmplx18_Mem: NuoB+NuoC.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

nuoC

Mnemonic

NADH:ubiquinone oxidoreductase

Synonyms

ECK2280, b2286, JW5375, nuoCD, nuoD[1], nuoD

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

51.73 minutes 

MG1655: 2401879..2400077
<gbrowseImage> name=NC_000913:2400077..2401879 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2347448..2345646
<gbrowseImage> name=NC_012967:2345646..2347448 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2285882..2287672
<gbrowseImage> name=NC_012759:2285882..2287672 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2408527..2406725
<gbrowseImage> name=NC_007779:2406725..2408527 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2493644..2491842
<gbrowseImage> name=NC_010473:2491842..2493644 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2400080

Edman degradation

PMID:7607227
PMID:11997136


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

nuoC(del) (Keio:JW5375)

deletion

deletion

PMID:16738554

Shigen

nuoC768(del)::FRT

deletion

Mutagenesis rate

Decrease in rate of stress induced mutagenesis (SIM)

PMID:23224554

Parent Strain: SMR4162 Experimental Strain: SMR12223

The mutation conferred a strong decrease in the rate of SIM, the mutation frequency being roughly 90 percent less than the wild type. See table S3 for full experimental results.

nuoC768(del)::FRT

deletion

Sensitivity to

Increased SDS-EDTA sensitivity

PMID:23224554

Parent Strain: SMR4162 Experimental Strain: SMR12223

The mutation conferred an increase in SDS-EDTA sensitivity relative to the wild type. See tables S7 and S1 for a summary of experimental data.

SMR4562 nuoC768(del)::FRT yiaG-yfp FRTcatFRT

Deletion

Sigma S

Decrease in SigmaS activity

PMID:23224554

Parental Strain: SMR10582 Experimental Strain: SMR12655

See table S8 for full experimental results.

CAG45114 nuoC768(del)::RTKanFRT

deltion

SigmaE activity

Decrease in sigmaE activity

PMID:23224554

Parental Strain: CAG45115 Experimental Strain: SMR15277

See table S11 for full experimental data.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5375

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGTGAACAATATGACCGACTT

Primer 2:CCGCGGTCCACATCTGACATAAC

E9B9

Kohara Phage

Genobase

PMID:3038334

9C2

Kohara Phage

Genobase

PMID:3038334

zfb-223::Tn10

Linked marker

CAG18484 = CGSC7406[5]

est. P1 cotransduction: 69% [6]
Synonyms:zej-223::Tn10

zfd-1::Tn10

Linked marker

CAG18467 = CGSC7408[5]

est. P1 cotransduction: % [6]
Synonyms:zfb-1::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12084

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12084

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001990

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946759

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2009

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007549

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

NuoC

Synonyms

NADH:ubiquinone oxidoreductase, chain C,D[1], B2286[2][1], NuoD[2][1], NuoCD[2][1], NuoC[2][1] , ECK2280, JW5375, nuoCD, nuoD, b2286

Product description

NuoC[2][3];

Component of connecting fragment of NADH dehydrogenase I[3]; NADH dehydrogenase I[2][3]

NADH:ubiquinone oxidoreductase subunit C, complex I; NADH dehydrogenase I[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

NOT

GO:0005737

cytoplasm

PMID:7607227

IDA: Inferred from Direct Assay

C

Seeded from Riley et al 2006 [1].

See discussion page for explanation of 'NOT' qualifier.

complete

GO:0003824

catalytic activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0511

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

PMID:7607227

IDA: Inferred from Direct Assay

C

The NADH dehydrogenase I complex fractionates with cytoplasmic membranes.

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0003954

NADH dehydrogenase activity

PMID:3122832

IDA: Inferred from Direct Assay

F

Purified NADH dehydrogenase I in membrane vesicles can oxidize NADH.

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0030964

NADH dehydrogenase complex

PMID:7607227

IDA: Inferred from Direct Assay

C

The E. coli NADH dehydrogenase complex was purified and the subunits separated by SDS-PAGE. The N-termini of these 6 polypeptides were sequenced after deblocking with methanolic HCl.

complete

GO:0008137

NADH dehydrogenase (ubiquinone) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001268

F

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0016651

oxidoreductase activity, acting on NADH or NADPH

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001135

F

Seeded from EcoCyc (v14.0)

complete

GO:0016651

oxidoreductase activity, acting on NADH or NADPH

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010218

F

Seeded from EcoCyc (v14.0)

complete

GO:0016651

oxidoreductase activity, acting on NADH or NADPH

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010219

F

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001135

F

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0874

F

Seeded from EcoCyc (v14.0)

complete

GO:0050136

NADH dehydrogenase (quinone) activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01359

F

Seeded from EcoCyc (v14.0)

complete

GO:0050136

NADH dehydrogenase (quinone) activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.6.99.5

F

Seeded from EcoCyc (v14.0)

complete

GO:0051287

NAD or NADH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001135

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001135

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001268

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010218

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010219

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of connecting fragment of NADH dehydrogenase I

could be indirect

Protein

gadB

PMID:19402753

MALDI(Z-score):19.246482

Protein

pcnB

PMID:19402753

MALDI(Z-score):24.739832

Protein

pflB

PMID:19402753

MALDI(Z-score):20.070712

Protein

dps

PMID:19402753

LCMS(ID Probability):99.6

Protein

metK

PMID:19402753

MALDI(Z-score):20.921273

Protein

cysJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

cysI

PMID:19402753

LCMS(ID Probability):99.6

Protein

crr

PMID:19402753

LCMS(ID Probability):99.6

Protein

ycbX

PMID:19402753

LCMS(ID Probability):99.6

Protein

Subunits of NADH dehydrogenase I

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Cytoplasm

PMID:7607227

EchoLocation:nuoC


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MVNNMTDLTA QEPAWQTRDH LDDPVIGELR NRFGPDAFTV QATRTGVPVV WIKREQLLEV
GDFLKKLPKP YVMLFDLHGM DERLRTHREG LPAADFSVFY HLISIDRNRD IMLKVALAEN
DLHVPTFTKL FPNANWYERE TWDLFGITFD GHPNLRRIMM PQTWKGHPLR KDYPARATEF
SPFELTKAKQ DLEMEALTFK PEEWGMKRGT ENEDFMFLNL GPNHPSAHGA FRIVLQLDGE
EIVDCVPDIG YHHRGAEKMG ERQSWHSYIP YTDRIEYLGG CVNEMPYVLA VEKLAGITVP
DRVNVIRVML SELFRINSHL LYISTFIQDV GAMTPVFFAF TDRQKIYDLV EAITGFRMHP
AWFRIGGVAH DLPRGWDRLL REFLDWMPKR LASYEKAALQ NTILKGRSQG VAAYGAKEAL
EWGTTGAGLR ATGIDFDVRK ARPYSGYENF DFEIPVGGGV SDCYTRVMLK VEELRQSLRI
LEQCLNNMPE GPFKADHPLT TPPPKERTLQ HIETLITHFL QVSWGPVMPA NESFQMIEAT
KGINSYYLTS DGSTMSYRTR VRTPSFAHLQ QIPAAIRGSL VSDLIVYLGS IDFVMSDVDR
Length

600

Mol. Wt

68.695 kDa

pI

6.4 (calculated)

Extinction coefficient

95,800 - 96,300 (calc based on 20 Y, 12 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P33599

Domain

55..167

PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit

PMID:19920124

Domain

325..596

PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=nuoC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698291

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946759

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007549

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P33599

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12084

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12084

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946759

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001990

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2009

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

32.453+/-0.16

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.216981132

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

3010

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1164

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2039

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

nuoABCEFGHIJKLMN

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2401859..2401899 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2286 (EcoliWiki Page)

NCBI GEO profiles for nuoC

microarray

GenExpDB:b2286 (EcoliWiki Page)

Summary of data for nuoC from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to nuoC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12084

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2009

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2286

EcoGene

EcoGene:EG12084

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001990

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007549

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021821 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000021345 (score: 0.888)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000002923 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000002852 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029684 (score: 1.000; bootstrap: 100%)
  • WBGene00038858 (score: 0.871)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006463 (score: 1.000; bootstrap: 100%)
  • WBGene00001520 (score: 0.905)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000018953 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012166 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-051120-30 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-051120-18 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-273 (score: 0.438)
  • ZDB-GENE-050522-273 (score: 0.438)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201599 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039331 (score: 1.000; bootstrap: 100%)
  • FBgn0039909 (score: 0.394)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11278-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000001067 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000289897 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000006020 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006337 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:2385112 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • P25709 (score: 1.000; bootstrap: 69%)
  • Q6L3D4 (score: 0.992)
  • Q6ENP1 (score: 0.992)
  • Q95H42 (score: 0.955)
  • P12132 (score: 0.953)
  • Q6ENA1 (score: 0.953)
  • O98691 (score: 0.952)
  • Q6QY32 (score: 0.767)
  • Q6QXW9 (score: 0.767)
  • Q8SAU0 (score: 0.205)
  • Q7G6A6 (score: 0.205)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000002642 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143516 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00006157001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000043132 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NUOC

From SHIGELLACYC

E. coli O157

NUOC

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Pfam (EcoliWiki Page)

PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit

Panther (EcoliWiki Page)

PTHR11993:SF10

Superfamily (EcoliWiki Page)

SUPERFAMILY:56762

Superfamily (EcoliWiki Page)

SUPERFAMILY:143243

EcoCyc

EcoCyc:EG12084

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12084

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001990

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2009

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007549

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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