nrdA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

nrdA

Gene Synonym(s)

ECK2226, b2234, JW2228, dnaF[1], dnaF

Product Desc.

NrdA[2][3];

Component of B1 protein[2][3]; ribonucleotide reductase I[2]

Ribonucleoside diphosphate reductase, subunit alpha; class I, aerobic; ribonucleotide reductase; B1 protein, R1 subunit[4]

Product Synonyms(s)

ribonucleoside diphosphate reductase 1, alpha subunit[1], B2234[2][1], DnaF[2][1], NrdA[2][1] , dnaF, ECK2226, JW2228, b2234

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nrdAB[2], OP00063, nrd, nrdA

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Reducing equivalents provided by glutaredoxin or thioredoxin. Binds TrxA (Kumar, 2004). About half of the overproduced protein has the first one or two amino acids removed. E. coli B native protein is reported to start with Gln. a second native E. coli B protein start may correspond to a cleavage after Leu26. Leu26 CTG codon is unlikely to be an alternative start codon in K-12 or B and no evidence of this cleavage or an alternative start codon was seen with the overproduced K-12 protein. An M-N or MN-Q cleavage by MAP would be unusual. The variable N-termini may be created by an unknown protease.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

nrdA

Mnemonic

Nucleotide reductase

Synonyms

ECK2226, b2234, JW2228, dnaF[1], dnaF

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

50.5 minutes 

MG1655: 2342887..2345172
<gbrowseImage> name=NC_000913:2342887..2345172 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2291565..2293850
<gbrowseImage> name=NC_012967:2291565..2293850 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2228692..2230977
<gbrowseImage> name=NC_012759:2228692..2230977 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2349535..2351820
<gbrowseImage> name=NC_007779:2349535..2351820 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2433875..2436160
<gbrowseImage> name=NC_010473:2433875..2436160 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2342887

Edman degradation

PMID:3894026


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

nrdA

Deletion

nrdA

Deletion

nrdAE441A,Q

E441A,Q

Loss of activity

seeded from UniProt:P00452

nrdAE441D

E441D

Decrease in activity

seeded from UniProt:P00452

nrdAY730F

Y730F

Loss of activity

seeded from UniProt:P00452

nrdAY731F

Y731F

Loss of activity

seeded from UniProt:P00452

nrdA1(ts)

temperature sensitive

CGSC:7271

nrdA pPS1

Resistant to

increased resistance to hydroxyurea

PMID:7009552

KK535

figure 4B.

nrdA pPS2

Resistant to

resistance to hydroxyurea

PMID:7009552

KK535

figure 4B

nrdA pPS101

Resistant to

slight increase in hydroxyurea resistance

PMID:7009552

KK535

figure 4

nrdA pPS201

Resistant to

slight increase resistance to hydroxyurea

PMID:7009552

KK535

figure 4

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2228

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAATCAGAATCTGCTGGTGAC

Primer 2:CCGATCTTACATGCGCCGCTTTC

2E8

Kohara Phage

Genobase

PMID:3038334

22C4

Kohara Phage

Genobase

PMID:3038334

atoS298::Tn10

Linked marker

CAG12177 gyrA+ = CGSC7525[5]

est. P1 cotransduction: 42% [6]
Synonyms:zeh-298::Tn10, zej-298::Tn10 nnnThe original CAG12177 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).

zfa-723::Tn10

Linked marker

CAG12178 gyrA+ = CGSC7526[5]

est. P1 cotransduction: 100% [6]
Synonyms:zei-723::Tn10, zfa-723::Tn10 nnnThe original CAG12178 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10660

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10660

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000653

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946612

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0654

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007383

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

NrdA

Synonyms

ribonucleoside diphosphate reductase 1, alpha subunit[1], B2234[2][1], DnaF[2][1], NrdA[2][1] , dnaF, ECK2226, JW2228, b2234

Product description

NrdA[2][3];

Component of B1 protein[2][3]; ribonucleotide reductase I[2]

Ribonucleoside diphosphate reductase, subunit alpha; class I, aerobic; ribonucleotide reductase; B1 protein, R1 subunit[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0015949

nucleobase, nucleoside and nucleotide interconversion

PMID:13973714

IDA: Inferred from Direct Assay

P

complete

GO:0005971

ribonucleoside-diphosphate reductase complex

PMID:13973714

IDA: Inferred from Direct Assay

C

complete

GO:0009263

deoxyribonucleotide biosynthetic process

PMID:13973714

IDA: Inferred from Direct Assay

P

complete

GO:0004748

ribonucleoside-diphosphate reductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000788

F

Seeded from EcoCyc (v14.0)

complete

GO:0004748

ribonucleoside-diphosphate reductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008926

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

PMID:4902211

IDA: Inferred from Direct Assay

F

complete

GO:0004748

ribonucleoside-diphosphate reductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013509

F

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0004748

ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor

PMID:13973714

IDA: Inferred from Direct Assay

F

replaces outdated GO:0016959

complete

GO:0004748

ribonucleoside-diphosphate reductase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.17.4.1

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008926

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013509

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005971

ribonucleoside-diphosphate reductase complex

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000788

C

Seeded from EcoCyc (v14.0)

complete

GO:0005971

ribonucleoside-diphosphate reductase complex

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008926

C

Seeded from EcoCyc (v14.0)

complete

GO:0005971

ribonucleoside-diphosphate reductase complex

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013346

C

Seeded from EcoCyc (v14.0)

complete

GO:0006260

DNA replication

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000788

P

Seeded from EcoCyc (v14.0)

complete

GO:0006260

DNA replication

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008926

P

Seeded from EcoCyc (v14.0)

complete

GO:0006260

DNA replication

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013509

P

Seeded from EcoCyc (v14.0)

complete

GO:0006260

DNA replication

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0235

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008926

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013346

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013509

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of B1 protein

could be indirect

Protein

mreB

PMID:15690043

Experiment(s):EBI-881495

Protein

proA

PMID:15690043

Experiment(s):EBI-881495

Protein

tufA

PMID:15690043

Experiment(s):EBI-881495

Protein

bglX

PMID:16606699

Experiment(s):EBI-1142281

Protein

mreB

PMID:19402753

MALDI(Z-score):35.698224

Protein

Subunits of ribonucleotide reductase I

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNQNLLVTKR DGSTERINLD KIHRVLDWAA EGLHNVSISQ VELRSHIQFY DGIKTSDIHE
TIIKAAADLI SRDAPDYQYL AARLAIFHLR KKAYGQFEPP ALYDHVVKMV EMGKYDNHLL
EDYTEEEFKQ MDTFIDHDRD MTFSYAAVKQ LEGKYLVQNR VTGEIYESAQ FLYILVAACL
FSNYPRETRL QYVKRFYDAV STFKISLPTP IMSGVRTPTR QFSSCVLIEC GDSLDSINAT
SSAIVKYVSQ RAGIGINAGR IRALGSPIRG GEAFHTGCIP FYKHFQTAVK SCSQGGVRGG
AATLFYPMWH LEVESLLVLK NNRGVEGNRV RHMDYGVQIN KLMYTRLLKG EDITLFSPSD
VPGLYDAFFA DQEEFERLYT KYEKDDSIRK QRVKAVELFS LMMQERASTG RIYIQNVDHC
NTHSPFDPAI APVRQSNLCL EIALPTKPLN DVNDENGEIA LCTLSAFNLG AINNLDELEE
LAILAVRALD ALLDYQDYPI PAAKRGAMGR RTLGIGVINF AYYLAKHGKR YSDGSANNLT
HKTFEAIQYY LLKASNELAK EQGACPWFNE TTYAKGILPI DTYKKDLDTI ANEPLHYDWE
ALRESIKTHG LRNSTLSALM PSETSSQISN ATNGIEPPRG YVSIKASKDG ILRQVVPDYE
HLHDAYELLW EMPGNDGYLQ LVGIMQKFID QSISANTNYD PSRFPSGKVP MQQLLKDLLT
AYKFGVKTLY YQNTRDGAED AQDDLVPSIQ DDGCESGACK I
Length

761

Mol. Wt

85.778 kDa

pI

5.7 (calculated)

Extinction coefficient

88,590 - 89,965 (calc based on 41 Y, 5 W, and 11 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

5..92

PF03477 ATP cone domain

PMID:19920124

Domain

141..220

PF00317 Ribonucleotide reductase, all-alpha domain

PMID:19920124

Domain

222..732

PF02867 Ribonucleotide reductase, barrel domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=nrdA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130169

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946612

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007383

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P00452

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10660

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10660

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946612

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000653

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0654

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.08E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

251.1+/-1.592

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.02047+/-0.00547

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.061706783

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

6667

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

904

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2748

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

nrdAB

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2342867..2342907 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2234 (EcoliWiki Page)

NCBI GEO profiles for nrdA

microarray

GenExpDB:b2234 (EcoliWiki Page)

Summary of data for nrdA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to nrdA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10660

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0654

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2234

EcoGene

EcoGene:EG10660

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000653

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007383

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012190 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000018334 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G21790 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000017428 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031617 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004391 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000008963 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018589 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000000624 (score: 0.261)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-990415-247 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-766 (score: 0.543)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230075 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0011703 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027981 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000300738 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000005291 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000010432 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:98180 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6K848 (score: 1.000; bootstrap: 100%)
  • Q5VRF5 (score: 0.901)
  • Q948F3 (score: 0.134)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005668 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YIL066C (score: 1.000; bootstrap: 100%)
  • YER070W (score: 0.814)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC1F75 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000152532 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000141958 (score: 0.819)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014797001 (score: 1.000; bootstrap: 100%)
  • GSTENP00022159001 (score: 0.700)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000008670 (score: 1.000; bootstrap: 99%)
  • ENSXETP00000041202 (score: 0.152)

From Inparanoid:20070104

Shigella flexneri

NRDA

From SHIGELLACYC

E. coli O157

NRDA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03477 ATP cone domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:48168

Superfamily (EcoliWiki Page)

SUPERFAMILY:51998

Panther (EcoliWiki Page)

PTHR11573:SF5

Pfam (EcoliWiki Page)

PF00317 Ribonucleotide reductase, all-alpha domain

Pfam (EcoliWiki Page)

PF02867 Ribonucleotide reductase, barrel domain

EcoCyc

EcoCyc:EG10660

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10660

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000653

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0654

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007383

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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