mnmE:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

mnmE

Gene Synonym(s)

trmE, ECK3699, b3706, JW3684, thdF, o454[1][2][3]

Product Desc.

GTP-binding protein with a role in modification of tRNA[3][2]

5-methylaminomethyl-2-thiouridine modification at tRNA U34; cmnm(5) addition to tRNA-s(2)U34, forming (with subsequent or interdependent MnmG action) cmnm(5)s(2)U34-tRNA, an intermediate in mnm(5)s(2)U34-tRNA synthesis[4]

Product Synonyms(s)

GTPase[1], B3706[3][1], MnmE[3][1], TrmE[3][1], ThdF[3][1], O454[3][1] , ECK3699, JW3684, thdF, trmE, b3706

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): trmE[3]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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GTPase activity is essential for modification function. Mutants are hypomodified for s(2)U34 in tRNA(Lys). The carboxymethylaminomethyl donor is unknown. U34 is the wobble base.mnmE has proposed to be epistatic to mnmG, preceding it in the pathway (Bregeon, 2001), but Yim (2000) suggest that the MnmE and MnmG activities are interdependent, not sequential. MnmG(GidA) and MnmE form a heterotetrameric complex (Yim, 2006).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

mnmE

Mnemonic

Methyl-amino(N)-Methyl

Synonyms

trmE, ECK3699, b3706, JW3684, thdF, o454[1][2][3]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

83.73 minutes 

MG1655: 3884851..3886215
<gbrowseImage> name=NC_000913:3884851..3886215 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3847189..3848553
<gbrowseImage> name=NC_012967:3847189..3848553 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3773184..3774548
<gbrowseImage> name=NC_012759:3773184..3774548 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3753587..3752223
<gbrowseImage> name=NC_007779:3752223..3753587 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

mnmED338N

D338N

Strong decrease in GTP binding. Does not affect hydrolase activity, but has 10-fold higher affinity for XTP than for GTP. Partially impairs tRNA modifying function

seeded from UniProt:P25522

thdF::Tn5KAN-I-SceI (FB21404)

Insertion at nt 378 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21404

contains pKD46

thdF::Tn5KAN-I-SceI (FB21405)

Insertion at nt 378 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21405

does not contain pKD46

mnmET251S

T251S

4-fold decrease in GTPase activity and 1.2-fold decrease of affinity

seeded from UniProt:P25522

mnmER252A

R252A

7-fold decrease in GTPase activity and 6-fold increase of affinity

seeded from UniProt:P25522

mnmER288A

R288A

1.7-fold decrease in GTPase activity and 1.5-fold increase of affinity

seeded from UniProt:P25522

mnmEG249A

G249A

22-fold decrease in GTPase activity and 7-fold increase of affinity

seeded from UniProt:P25522

mnmET250A

T250A

4-fold decrease in GTPase activity and 1.5-fold increase of affinity

seeded from UniProt:P25522

mnmET250S

T250S

1.8-fold decrease in GTPase activity and 1.5-fold increase of affinity

seeded from UniProt:P25522

mnmED270A

D270A

Does not affect GTP binding, but impairs hydrolase activity. Completely impairs tRNA modifying function

seeded from UniProt:P25522

mnmEL255D

L255D

1.5-fold decrease in affinity for GTP

seeded from UniProt:P25522

mnmER256A

R256A

2-fold decrease in GTPase activity and almost no change in affinity

seeded from UniProt:P25522

mnmEN226K

N226K

70-fold decrease in GTPase activity. 2-fold decrease of affinity for GTP

seeded from UniProt:P25522

mnmEG228A

G228A

Loss of GTP binding and hydrolase activity. Completely impairs tRNA modifying function

seeded from UniProt:P25522

mnmEC451S

C451S

No change in GTP binding and hydrolase activity. Does not affect association to the cell inner membrane. Completely impairs tRNA modifying function

seeded from UniProt:P25522

mnmER224A

R224A

1.5-fold decrease in GTPase activity and almost no change in affinity

seeded from UniProt:P25522

mnmET251A

T251A

92-fold decrease in GTPase activity and 59-fold increase of affinity

seeded from UniProt:P25522

mnmER275A

R275A

6-fold decrease in GTPase activity and 1.9-fold increase of affinity

seeded from UniProt:P25522

mnmEE282A

E282A

1900-fold decrease in GTPase activity

seeded from UniProt:P25522

mnmEE282Q

E282Q

370-fold decrease in GTPase activity

seeded from UniProt:P25522

mnmEN226A

N226A

100-fold decrease in GTPase activity. 5-fold decrease of affinity for GTP

seeded from UniProt:P25522

mnmER252K

R252K

2-fold decrease in GTPase activity and no change in affinity

seeded from UniProt:P25522

mnmED253A

D253A

9-fold decrease in GTPase activity and 13-fold increase of affinity

seeded from UniProt:P25522

ΔtrmE737::kan

PMID:16738554

CGSC:103218


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

2A2

Kohara Phage

Genobase

PMID:3038334

3F11

Kohara Phage

Genobase

PMID:3038334

3C10

Kohara Phage

Genobase

PMID:3038334

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10997

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10997

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000986

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948222

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0990

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012123

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TrmE

Synonyms

GTPase[1], B3706[3][1], MnmE[3][1], TrmE[3][1], ThdF[3][1], O454[3][1] , ECK3699, JW3684, thdF, trmE, b3706

Product description

GTP-binding protein with a role in modification of tRNA[3][2]

5-methylaminomethyl-2-thiouridine modification at tRNA U34; cmnm(5) addition to tRNA-s(2)U34, forming (with subsequent or interdependent MnmG action) cmnm(5)s(2)U34-tRNA, an intermediate in mnm(5)s(2)U34-tRNA synthesis[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0003924

GTPase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00379

F

Seeded from EcoCyc (v14.0)

complete

GO:0003924

GTPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004520

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00379

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002917

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004520

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005225

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0342

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0030955

potassium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0630

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aceE

PMID:15690043

Experiment(s):EBI-890013, EBI-894976

Protein

rpsB

PMID:15690043

Experiment(s):EBI-890013, EBI-894976

Protein

yliL

PMID:15690043

Experiment(s):EBI-894976

Protein

dcm

PMID:15690043

Experiment(s):EBI-894976

Protein

dsbA

PMID:15690043

Experiment(s):EBI-894976

Protein

hupA

PMID:15690043

Experiment(s):EBI-894976

Protein

lpdA

PMID:15690043

Experiment(s):EBI-894976

Protein

mdh

PMID:15690043

Experiment(s):EBI-894976

Protein

rplC

PMID:15690043

Experiment(s):EBI-894976

Protein

rplD

PMID:15690043

Experiment(s):EBI-894976

Protein

rplM

PMID:15690043

Experiment(s):EBI-894976

Protein

rplV

PMID:15690043

Experiment(s):EBI-894976

Protein

rpmG

PMID:15690043

Experiment(s):EBI-894976

Protein

rpsF

PMID:15690043

Experiment(s):EBI-894976

Protein

rpsG

PMID:15690043

Experiment(s):EBI-894976

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-894976

Protein

rpsN

PMID:15690043

Experiment(s):EBI-894976

Protein

sapF

PMID:15690043

Experiment(s):EBI-894976

Protein

secA

PMID:15690043

Experiment(s):EBI-894976

Protein

pgaD

PMID:15690043

Experiment(s):EBI-894976

Protein

yidA

PMID:15690043

Experiment(s):EBI-894976

Protein

dsbA

PMID:19402753

LCMS(ID Probability):99.0

Protein

mdh

PMID:19402753

LCMS(ID Probability):99.0

Protein

secA

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):14.201221

Protein

yidA

PMID:19402753

LCMS(ID Probability):99.0

Protein

sapF

PMID:19402753

LCMS(ID Probability):99.0

Protein

mnmG

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):27.178626

Protein

dcm

PMID:19402753

LCMS(ID Probability):99.0

Protein

yliL

PMID:19402753

LCMS(ID Probability):99.0

Protein

pgaD

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[2]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSDNDTIVAQ ATPPGRGGVG ILRISGFKAR EVAETVLGKL PKPRYADYLP FKDADGSVLD
QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILTI PGLRIARPGE FSERAFLNDK
LDLAQAEAIA DLIDASSEQA ARSALNSLQG AFSARVNHLV EALTHLRIYV EAAIDFPDEE
IDFLSDGKIE AQLNDVIADL DAVRAEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE
AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLREASDE VERIGIERAW QEIEQADRVL
FMVDGTTTDA VDPAEIWPEF IARLPAKLPI TVVRNKADIT GETLGMSEVN GHALIRLSAR
TGEGVDVLRN HLKQSMGFDT NMEGGFLARR RHLQALEQAA EHLQQGKAQL LGAWAGELLA
EELRLAQQNL SEITGEFTSD DLLGRIFSSF CIGK
Length

454

Mol. Wt

49.232 kDa

pI

4.8 (calculated)

Extinction coefficient

26,470 - 26,595 (calc based on 3 Y, 4 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

228..336

PF01926 GTPase of unknown function

PMID:19920124

Domain

6..120

PF10396 GTP-binding protein TrmE N-terminus

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=mnmE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131574

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948222

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012123

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P25522

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10997

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10997

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948222

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000986

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0990

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

159.266+/-7.853

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.77529+/-0.02581

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

Protein

E. coli K-12 MG1655

1049

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

247

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

319

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

trmE

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File:.jpg

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3884831..3884871 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3706 (EcoliWiki Page)

NCBI GEO profiles for mnmE

microarray

GenExpDB:b3706 (EcoliWiki Page)

Summary of data for mnmE from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (3884257..3884526) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ13; Well:G1[5]

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Notes

Accessions Related to mnmE Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10997

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0990

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3706

EcoGene

EcoGene:EG10997

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000986

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012123

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000007751 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000027085 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G78010 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000005506 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038929 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009557 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000022663 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012111 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050522-335 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-335 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190890 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039189 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000351644 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000030809 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000018872 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1917609 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6Z9X4 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000018206 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000000070 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YMR023C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC2225c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158019 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019290001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000028627 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

THDF

From SHIGELLACYC

E. coli O157

THDF

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01926 GTPase of unknown function

Panther (EcoliWiki Page)

PTHR11649:SF30

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:116878

Pfam (EcoliWiki Page)

PF10396 GTP-binding protein TrmE N-terminus

EcoCyc

EcoCyc:EG10997

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10997

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000986

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0990

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012123

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 3.13 3.14 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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