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On One Page

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Gene |

Product(s) |

Expression|

Evolution |

References |

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Standard Name	manA
Gene Synonym(s)	ECK1608, b1613, JW1605, pmi^[1], pmi, manI ^[2]
Product Desc.	Mannosephosphate isomerase^[3]
Product Synonyms(s)	mannose-6-phosphate isomerase^[1], Pmi^[4]^[1], B1613^[4]^[1], ManA^[4]^[1], phosphomannose isomerase^[4]^[1], phosphohexoisomerase^[4]^[1], phosphohexomutase^[4]^[1], D-mannose-6-phosphate ketol-isomerase^[4]^[1] , ECK1608, JW1605, pmi, b1613
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): manA^[4]
Regulation/Activity
Quick Links
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</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	manA
Mnemonic	Mannose
Synonyms	ECK1608, b1613, JW1605, pmi^[1], pmi, manI ^[2]
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	36.35 minutes	MG1655: 1686600..1687775 <gbrowseImage> name=NC_000913:1686600..1687775 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 1665771..1666946 <gbrowseImage> name=NC_012967:1665771..1666946 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 1578659..1579834 <gbrowseImage> name=NC_012759:1578659..1579834 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 1690290..1691465 <gbrowseImage> name=NC_007779:1690290..1691465 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 1777561..1778736 <gbrowseImage> name=NC_010473:1777561..1778736 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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</protect>

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
manA(del) (Keio:JW1605)	deletion	deletion			PMID:16738554	Shigen CGSC9366^[5]
manA::Tn5KAN-2 (FB20388)	Insertion at nt 1014 in Plus orientation				PMID:15262929	E. coli Genome Project:FB20388	does not contain pKD46
manA::Tn5KAN-2 (FB20389)	Insertion at nt 1014 in Plus orientation				PMID:15262929	E. coli Genome Project:FB20389	contains pKD46
manA4						CGSC:5801
manA3					PMID:4862193	CGSC:11759
manA1578						CGSC:23696
manA8						CGSC:74098
manA761(del)::kan					PMID:16738554	CGSC:101754
manA^-			Sensitivity to	sensitive to Streptozotocin	PMID:6450313	Strain: IR-101	table 2
manA(del)			Resistant to	Resistant to chloramphenicol	PMID:1715857	Strain: HH84
manA(del)			Resistant to	Resistant to Tetracycline	PMID:1715857	Strain: HH84
manA(del)			Resistant to	Resistant to ampicillin	PMID:1715857	Strain: HH84
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW1605	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCCAAAAACTCATTAACTCAGT Primer 2:CCaAGCTTGTTGTAAACACGCGC
6A3	Kohara Phage	Genobase	PMID:3038334
6A5	Kohara Phage	Genobase	PMID:3038334
zdd-235::Tn10	Linked marker	CAG18461 = CGSC7378^[5]	est. P1 cotransduction: % ^[6] Synonyms:zdc-235::Tn10
zdi-925::Tn10	Linked marker	CAG12151 = CGSC7385^[5]	est. P1 cotransduction: % ^[6] Synonyms:zdh-925::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10566	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10566	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000559	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:944840	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0561	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0005398	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	ManA
Synonyms	mannose-6-phosphate isomerase^[1], Pmi^[4]^[1], B1613^[4]^[1], ManA^[4]^[1], phosphomannose isomerase^[4]^[1], phosphohexoisomerase^[4]^[1], phosphohexomutase^[4]^[1], D-mannose-6-phosphate ketol-isomerase^[4]^[1] , ECK1608, JW1605, pmi, b1613
Product description	Mannosephosphate isomerase^[3]
EC number (for enzymes)	5.3.1.8^[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0004476	mannose-6-phosphate isomerase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001250	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004476	mannose-6-phosphate isomerase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR016305	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004476	mannose-6-phosphate isomerase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:5.3.1.8	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0963	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0086	C	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001250	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0862	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046872	metal ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0479	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	prs	PMID:16606699	Experiment(s):EBI-1140263
Protein	zwf	PMID:16606699	Experiment(s):EBI-1140263
Protein	malZ	PMID:16606699	Experiment(s):EBI-1140263
Protein	bioC	PMID:16606699	Experiment(s):EBI-1140263
Protein	nadE	PMID:16606699	Experiment(s):EBI-1140263
Protein	mviN	PMID:16606699	Experiment(s):EBI-1140263
Protein	hybA	PMID:16606699	Experiment(s):EBI-1140263
Protein	rplB	PMID:16606699	Experiment(s):EBI-1140263
Protein	aas	PMID:16606699	Experiment(s):EBI-1140263
Protein	ykgF	PMID:16606699	Experiment(s):EBI-1140263
Protein	ushA	PMID:16606699	Experiment(s):EBI-1140263
Protein	yqjG	PMID:16606699	Experiment(s):EBI-1140263
Protein	yidK	PMID:16606699	Experiment(s):EBI-1140263
Protein	gltX	PMID:16606699	Experiment(s):EBI-1140263
Protein	ygaF	PMID:16606699	Experiment(s):EBI-1140263
Protein	ydfT	PMID:15690043	Experiment(s):EBI-892424
Protein	minC	PMID:15690043	Experiment(s):EBI-892424
Protein	ycbY	PMID:15690043	Experiment(s):EBI-892424
Protein	rimN	PMID:15690043	Experiment(s):EBI-892424
Protein	rlmL	PMID:19402753	LCMS(ID Probability):99.0
Protein	rimN	PMID:19402753	LCMS(ID Probability):99.0
Protein	quuQ	PMID:19402753	LCMS(ID Probability):99.0
Protein	minC	PMID:19402753	LCMS(ID Probability):99.0
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</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
cytoplasm			From EcoCyc^[7]
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MQKLINSVQN YAWGSKTALT ELYGMENPSS QPMAELWMGA HPKSSSRVQN AAGDIVSLRD VIESDKSTLL GEAVAKRFGE LPFLFKVLCA AQPLSIQVHP NKHNSEIGFA KENAAGIPMD AAERNYKDPN HKPELVFALT PFLAMNAFRE FSEIVSLLQP VAGAHPAIAH FLQQPDAERL SELFASLLNM QGEEKSRALA ILKSALDSQQ GEPWQTIRLI SEFYPEDSGL FSPLLLNVVK LNPGEAMFLF AETPHAYLQG VALEVMANSD NVLRAGLTPK YIDIPELVAN VKFEAKPANQ LLTQPVKQGA ELDFPIPVDD FAFSLHDLSD KETTISQQSA AILFCVEGDA TLWKGSQQLQ LKPGESAFIA ANESPVTVKG HGRLARVYNK L
Length	391
Mol. Wt	42.85 kDa
pI	5.3 (calculated)
Extinction coefficient	32,430 - 32,680 (calc based on 7 Y, 4 W, and 2 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	1..357	PF01238 Phosphomannose isomerase type I		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=manA taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:49176125	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:944840	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0005398	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P00946	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10566	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10566	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:944840	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000559	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0561	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MC4100	8.59E+02	molecules/cell	Medium: median data from rich and minimal media Temperature (°C): 37 Doubling time (min): Growth Rate(min): Growth phase: other:	emPAI		PMID:18304323
Protein	Ecoli K-12	22.119+/-0.147	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.047659574	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	1879	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	576	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	1479	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
manA
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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1686580..1686620 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b1613 (EcoliWiki Page)	NCBI GEO profiles for manA
microarray	GenExpDB:b1613 (EcoliWiki Page)	Summary of data for manA from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to manA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10566	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0561	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b1613
EcoGene	EcoGene:EG10566	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000559	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0005398	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000017463 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000024805 (score: 1.000; bootstrap: 52%)	From Inparanoid:20070104
Arabidopsis thaliana	AT3G02570 (score: 1.000; bootstrap: 100%) AT1G67070 (score: 0.545)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000007684 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00031479 (score: 1.000; bootstrap: 100%) WBGene00038390 (score: 0.080)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00014013 (score: 1.000; bootstrap: 100%) WBGene00015464 (score: 0.074)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000026549 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000010975 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-050904-6 (score: 1.000; bootstrap: 100%) ZDB-CDNA-050904-6 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Dictyostelium discoideum	DDB0231659 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0037744 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila pseudoobscura	GA21062-PA (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000002608 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Homo sapiens	ENSP00000318318 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000006918 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000011544 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Mus musculus	MGI:97075 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Oryza gramene	Q6H5C7 (score: 1.000; bootstrap: 100%) Q9FTR6 (score: 0.606)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000012471 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000025783 (score: 1.000; bootstrap: 100%) ENSRNOP00000036464 (score: 0.328)	From Inparanoid:20070104
Saccharomyces cerevisiae	YER003C (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPBC2G26 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000137082 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00019688001 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000045684 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Shigella flexneri	MANA	From SHIGELLACYC
E. coli O157	MANA	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Superfamily (EcoliWiki Page)	SUPERFAMILY:51182
Panther (EcoliWiki Page)	PTHR10309:SF0
Pfam (EcoliWiki Page)	PF01238 Phosphomannose isomerase type I
EcoCyc	EcoCyc:EG10566	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10566	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000559	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0561	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0005398	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 ^1.13 ^1.14 ^1.15 ^1.16 ^1.17 ^1.18 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 Munch-Petersen, A & Mygind, B (1976) Nucleoside transport systems in Escherichia coli K12: specificity and regulation. J. Cell. Physiol. 89 551-9 PubMed
↑ ^3.0 ^3.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^4.00 ^4.01 ^4.02 ^4.03 ^4.04 ^4.05 ^4.06 ^4.07 ^4.08 ^4.09 ^4.10 ^4.11 ^4.12 ^4.13 ^4.14 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

manA:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to manA Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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