malK:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

malK

Gene Synonym(s)

ECK4027, b4035, JW3995, malB[1]

Product Desc.

MalK[2][3];

Component of maltose ABC transporter[2][3]; Maltose/Maltodextrin Transport System[3]

Maltose transport complex, ATP-binding subunit[4]

Product Synonyms(s)

fused maltose transport subunit, ATP-binding component of ABC superfamily[1], regulatory protein[1], B4035[2][1], MalB[2][1], MalK[2][1] , ECK4027, JW3995, b4035

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): malK-lamB-malM[2], OP00165

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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The inactive, ATP-bound form of MalK directly antagonizes the mal regulon activator MalT. The maltose transport complex MalFGK(2) also transports maltodextrin. Overexpression causes filamentous biofilm formation. MalT regulon.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

malK

Mnemonic

Maltose

Synonyms

ECK4027, b4035, JW3995, malB[1]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

91.49 minutes 

MG1655: 4244807..4245922
<gbrowseImage> name=NC_000913:4244807..4245922 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4225716..4226831
<gbrowseImage> name=NC_012967:4225716..4226831 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4183652..4184767
<gbrowseImage> name=NC_012759:4183652..4184767 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4250374..4251489
<gbrowseImage> name=NC_007779:4250374..4251489 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4344503..4345618
<gbrowseImage> name=NC_010473:4344503..4345618 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔmalK (Keio:JW3995)

deletion

deletion

PMID:16738554

Shigen
CGSC10876[5]

malKG137A

G137A

Loss of maltose transport. Has greater ability to decrease mal gene expression than wild-type malK

seeded from UniProt:P68187

malKA124T

A124T

Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity

seeded from UniProt:P68187

malKA85M

A85M

Suppressor of EAA loop mutations in MalFG

seeded from UniProt:P68187

malKK106C

K106C

Suppressor of EAA loop mutations in MalFG

seeded from UniProt:P68187

malKV114C

V114C

Suppressor of EAA loop mutations in MalFG

seeded from UniProt:P68187

malKR228C

R228C

Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity

seeded from UniProt:P68187

malKF241I

F241I

Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity

seeded from UniProt:P68187

malKW267G

W267G

Normal maltose transport but constitutive mal gene expression

seeded from UniProt:P68187

malKD158N

D158N

Loss of maltose transport but retains ability to repress mal genes

seeded from UniProt:P68187

malKG340A

G340A

Maltose transport is affected but retains ability to interact with malT

seeded from UniProt:P68187

malKG278P

G278P

Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity

seeded from UniProt:P68187

malKS282L

S282L

Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity

seeded from UniProt:P68187

malKG284S

G284S

Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity

seeded from UniProt:P68187

malKG302D

G302D

Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity

seeded from UniProt:P68187

malKE308Q

E308Q

Maltose transport is affected but retains ability to interact with malT

seeded from UniProt:P68187

malKS322F

S322F

Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity

seeded from UniProt:P68187

malKG346S

G346S

Normal maltose transport but constitutive mal gene expression

seeded from UniProt:P68187

malKF355Y

F355Y

Maltose transport is affected but retains ability to interact with malT

seeded from UniProt:P68187

malKV117M

V117M

Suppressor of EAA loop mutations in MalFG

seeded from UniProt:P68187

malKE119K

E119K

Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity

seeded from UniProt:P68187

malK62(Am)

CGSC:7084

amber (UAG) mutation

malK58::Tn5

CGSC:9958

malK27

CGSC:14199

ΔmalK731::kan

PMID:16738554

CGSC:101738


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3995

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGCGAGCGTACAGCTGCAAAA

Primer 2:CCAACGCCCGGCTCCTTATGCAG

7A4

Kohara Phage

Genobase

PMID:3038334

1F8

Kohara Phage

Genobase

PMID:3038334

12B4

Kohara Phage

Genobase

PMID:3038334

malF3089::Tn10

Linked marker

CAG12164 = CGSC7476[5]

est. P1 cotransduction: 87% [6]

zje-2241::Tn10

Linked marker

CAG18427 = CGSC7481[5]

est. P1 cotransduction: 4% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10558

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10558

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000551

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948537

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0553

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013216

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

MalK

Synonyms

fused maltose transport subunit, ATP-binding component of ABC superfamily[1], regulatory protein[1], B4035[2][1], MalB[2][1], MalK[2][1] , ECK4027, JW3995, b4035

Product description

MalK[2][3];

Component of maltose ABC transporter[2][3]; Maltose/Maltodextrin Transport System[3]

Maltose transport complex, ATP-binding subunit[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008995

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013611

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015855

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0015423

maltose-transporting ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015855

F

Seeded from EcoCyc (v14.0)

complete

GO:0015423

maltose-transporting ATPase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.6.3.19

F

Seeded from EcoCyc (v14.0)

complete

GO:0015609

maltooligosaccharide-importing ATPase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01709

F

Seeded from EcoCyc (v14.0)

complete

GO:0015768

maltose transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015855

P

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0043190

ATP-binding cassette (ABC) transporter complex

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008995

C

Seeded from EcoCyc (v14.0)

complete

GO:0043190

ATP-binding cassette (ABC) transporter complex

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013611

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of maltose ABC transporter

could be indirect

Protein

Subunits of Maltose/Maltodextrin Transport System

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MASVQLQNVT KAWGEVVVSK DINLDIHEGE FVVFVGPSGC GKSTLLRMIA GLETITSGDL
FIGEKRMNDT PPAERGVGMV FQSYALYPHL SVAENMSFGL KLAGAKKEVI NQRVNQVAEV
LQLAHLLDRK PKALSGGQRQ RVAIGRTLVA EPSVFLLDEP LSNLDAALRV QMRIEISRLH
KRLGRTMIYV THDQVEAMTL ADKIVVLDAG RVAQVGKPLE LYHYPADRFV AGFIGSPKMN
FLPVKVTATA IDQVQVELPM PNRQQVWLPV ESRDVQVGAN MSLGIRPEHL LPSDIADVIL
EGEVQVVEQL GNETQIHIQI PSIRQNLVYR QNDVVLVEEG ATFAIGLPPE RCHLFREDGT
ACRRLHKEPG V
Length

371

Mol. Wt

40.989 kDa

pI

6.7 (calculated)

Extinction coefficient

19,940 - 20,315 (calc based on 6 Y, 2 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

43..162

PF00005 ABC transporter

PMID:19920124

Domain

283..355

PF08402 TOBE domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=malK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131861

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948537

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013216

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P68187

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10558

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10558

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948537

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000551

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0553

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.12E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

96.891+/-0.434

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.70273+/-0.09491

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.059641256

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

31

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

61

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

malK-lamB-malM

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:4244787..4244827 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b4035 (EcoliWiki Page)

NCBI GEO profiles for malK

microarray

GenExpDB:b4035 (EcoliWiki Page)

Summary of data for malK from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to malK Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10558

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0553

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4035

EcoGene

EcoGene:EG10558

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000551

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013216

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014654 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031362 (score: 1.000; bootstrap: 69%)
  • FBgn0032167 (score: 0.229)
  • FBgn0025683 (score: 0.225)
  • FBgn0020762 (score: 0.211)
  • FBgn0031516 (score: 0.208)
  • FBgn0031220 (score: 0.184)
  • FBgn0052091 (score: 0.175)
  • FBgn0031449 (score: 0.159)
  • FBgn0031515 (score: 0.153)
  • FBgn0003996 (score: 0.077)
  • FBgn0003515 (score: 0.074)
  • FBgn0020445 (score: 0.059)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14594-PA (score: 1.000; bootstrap: 57%)
  • GA16356-PA (score: 0.236)
  • GA15545-PA (score: 0.235)
  • GA19180-PA (score: 0.225)
  • GA18458-PA (score: 0.185)
  • GA16671-PA (score: 0.176)
  • GA16397-PA (score: 0.154)
  • GA15454-PA (score: 0.057)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000130824 (score: 1.000; bootstrap: 57%)
  • NEWSINFRUP00000130826 (score: 0.180)
  • NEWSINFRUP00000167567 (score: 0.137)
  • NEWSINFRUP00000182359 (score: 0.125)
  • NEWSINFRUP00000177047 (score: 0.125)
  • NEWSINFRUP00000168237 (score: 0.097)
  • NEWSINFRUP00000171182 (score: 0.092)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014344001 (score: 1.000; bootstrap: 57%)
  • GSTENP00014343001 (score: 0.105)
  • GSTENP00020877001 (score: 0.101)
  • GSTENP00038511001 (score: 0.091)
  • GSTENP00014937001 (score: 0.051)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000042210 (score: 1.000; bootstrap: 89%)
  • ENSXETP00000041384 (score: 0.625)

From Inparanoid:20070104

Shigella flexneri

MALK

From SHIGELLACYC

E. coli O157

MALK

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00005 ABC transporter

Superfamily (EcoliWiki Page)

SUPERFAMILY:50331

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Pfam (EcoliWiki Page)

PF08402 TOBE domain

EcoCyc

EcoCyc:EG10558

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10558

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000551

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0553

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013216

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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