infC:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

infC

Gene Synonym(s)

ECK1716, b1718, JW5829, fit, srjA[1], srjA

Product Desc.

protein chain initiation factor IF-3[2][3]

Protein chain initiation factor IF3; unusual AUU start codon[4]

Product Synonyms(s)

protein chain initiation factor IF-3[1], B1718[2][1], Fit[2][1], SrjA[2][1], InfC[2][1], IF3[2][1] , ECK1716, fit, JW5829, srjA, b1718

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): infC[2], thrS-infC-rpmI-rplT[2][3]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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HT_Cmplx17_Mem: InfC+RpsG.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

infC

Mnemonic

Initiation factor

Synonyms

ECK1716, b1718, JW5829, fit, srjA[1], srjA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

38.76 minutes 

MG1655: 1798662..1798120
<gbrowseImage> name=NC_000913:1798120..1798662 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1777797..1777363
<gbrowseImage> name=NC_012967:1777363..1777797 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1690179..1690721
<gbrowseImage> name=NC_012759:1690179..1690721 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1802352..1801810
<gbrowseImage> name=NC_007779:1801810..1802352 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1798120

Edman degradation

PMID:330233


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

infCY107F,L

Y107F,L

Reduced ribosome binding

seeded from UniProt:P0A707

infCK110R,L

K110R,L

Reduced ribosome binding

seeded from UniProt:P0A707

infC362

PMID:8858589

CGSC:66428

infC561

PMID:8858589

CGSC:66431


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5829

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAAGGCGGAAAACGAGTTCA

Primer 2:CCtTGTTTCTTCTTAGGAGCGAG

20F5

Kohara Phage

Genobase

PMID:3038334

20H8

Kohara Phage

Genobase

PMID:3038334

8A4

Kohara Phage

Genobase

PMID:3038334

zdi-925::Tn10

Linked marker

CAG12151 = CGSC7385[5]

est. P1 cotransduction: 46% [6]
Synonyms:zdh-925::Tn10

zdj-276::Tn10

Linked marker

CAG18464 = CGSC7387[5]

est. P1 cotransduction: 25% [6]
Synonyms:zdi-276::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10506

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10506

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000499

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946225

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0501

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005734

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

InfC

Synonyms

protein chain initiation factor IF-3[1], B1718[2][1], Fit[2][1], SrjA[2][1], InfC[2][1], IF3[2][1] , ECK1716, fit, JW5829, srjA, b1718

Product description

protein chain initiation factor IF-3[2][3]

Protein chain initiation factor IF3; unusual AUU start codon[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00080

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001288

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019813

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019814

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019815

F

Seeded from EcoCyc (v14.0)

complete

GO:0003743

translation initiation factor activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0396

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0648

P

Seeded from EcoCyc (v14.0)

complete

GO:0006413

translational initiation

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00080

P

Seeded from EcoCyc (v14.0)

complete

GO:0006413

translational initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001288

P

Seeded from EcoCyc (v14.0)

complete

GO:0006413

translational initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019813

P

Seeded from EcoCyc (v14.0)

complete

GO:0006413

translational initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019814

P

Seeded from EcoCyc (v14.0)

complete

GO:0006413

translational initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019815

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ynbC

PMID:15690043

Experiment(s):EBI-889800

Protein

rng

PMID:15690043

Experiment(s):EBI-889800

Protein

rplB

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rplC

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rplD

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rplE

PMID:15690043

Experiment(s):EBI-889800

Protein

rplJ

PMID:15690043

Experiment(s):EBI-889800

Protein

rplK

PMID:15690043

Experiment(s):EBI-889800

Protein

rpsA

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rpsB

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rpsC

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rpsD

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rpsE

PMID:15690043

Experiment(s):EBI-889800, EBI-894739, EBI-884272

Protein

rpsF

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rpsG

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

rpsK

PMID:15690043

Experiment(s):EBI-889800

Protein

rpsM

PMID:15690043

Experiment(s):EBI-889800, EBI-894739

Protein

ccmB

PMID:15690043

Experiment(s):EBI-894739

Protein

dacA

PMID:15690043

Experiment(s):EBI-894739

Protein

hupB

PMID:15690043

Experiment(s):EBI-894739

Protein

rplI

PMID:15690043

Experiment(s):EBI-894739

Protein

rplL

PMID:15690043

Experiment(s):EBI-894739

Protein

rplM

PMID:15690043

Experiment(s):EBI-894739

Protein

rplO

PMID:15690043

Experiment(s):EBI-894739

Protein

rplP

PMID:15690043

Experiment(s):EBI-894739

Protein

rplS

PMID:15690043

Experiment(s):EBI-894739

Protein

rplT

PMID:15690043

Experiment(s):EBI-894739

Protein

rplU

PMID:15690043

Experiment(s):EBI-894739

Protein

rplV

PMID:15690043

Experiment(s):EBI-894739

Protein

rplX

PMID:15690043

Experiment(s):EBI-894739

Protein

rpmG

PMID:15690043

Experiment(s):EBI-894739

Protein

rpsH

PMID:15690043

Experiment(s):EBI-894739

Protein

rpsI

PMID:15690043

Experiment(s):EBI-894739

Protein

rpsN

PMID:15690043

Experiment(s):EBI-894739

Protein

rpsO

PMID:15690043

Experiment(s):EBI-894739

Protein

rpsP

PMID:15690043

Experiment(s):EBI-894739

Protein

rpsR

PMID:15690043

Experiment(s):EBI-894739

Protein

rpsS

PMID:15690043

Experiment(s):EBI-894739

Protein

rpsT

PMID:15690043

Experiment(s):EBI-894739

Protein

rpsU

PMID:15690043

Experiment(s):EBI-894739

Protein

yfiF

PMID:15690043

Experiment(s):EBI-894739

Protein

yhbY

PMID:15690043

Experiment(s):EBI-894739

Protein

sufC

PMID:15690043

Experiment(s):EBI-894739

Protein

hupB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplK

PMID:19402753

LCMS(ID Probability):90.0 MALDI(Z-score):17.053160

Protein

gyrA

PMID:19402753

MALDI(Z-score):27.834783

Protein

rplS

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):4.182490

Protein

rpsT

PMID:19402753

LCMS(ID Probability):99.4

Protein

rpsF

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):25.158298

Protein

rplO

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsJ

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):13.119568

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):2.271909

Protein

rpsN

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):6.774524

Protein

rplT

PMID:19402753

LCMS(ID Probability):99.0

Protein

rpsS

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):27.307921

Protein

rpsM

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):31.815457

Protein

rpsH

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):2.028396

Protein

rpsR

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):36.139927

Protein

srmB

PMID:19402753

MALDI(Z-score):27.406480

Protein

sufC

PMID:19402753

LCMS(ID Probability):99.2

Protein

rpsD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):37.639394

Protein

rpsI

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):20.822580

Protein

rpsU

PMID:19402753

LCMS(ID Probability):99.6

Protein

clpA

PMID:19402753

MALDI(Z-score):22.184306

Protein

dacA

PMID:19402753

LCMS(ID Probability):99.2

Protein

rpsO

PMID:19402753

LCMS(ID Probability):99.6

Protein

parC

PMID:19402753

MALDI(Z-score):28.844089

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):3.745052

Protein

yhbY

PMID:19402753

LCMS(ID Probability):99.0

Protein

nadE

PMID:19402753

MALDI(Z-score):39.214842

Protein

yfiF

PMID:19402753

LCMS(ID Probability):99.0

Protein

rng

PMID:19402753

MALDI(Z-score):18.226567

Protein

plsB

PMID:19402753

MALDI(Z-score):25.207725

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKGGKRVQTA RPNRINGEIR AQEVRLTGLE GEQLGIVSLR EALEKAEEAG VDLVEISPNA
EPPVCRIMDY GKFLYEKSKS SKEQKKKQKV IQVKEIKFRP GTDEGDYQVK LRSLIRFLEE
GDKAKITLRF RGREMAHQQI GMEVLNRVKD DLQELAVVES FPTKIEGRQM IMVLAPKKKQ
Length

180

Mol. Wt

20.563 kDa

pI

9.9 (calculated)

Extinction coefficient

4,470 - 4,595 (calc based on 3 Y, 0 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed; alternate

UniProt:P0A707

Domain

10..85

PF05198 Translation initiation factor IF-3, N-terminal domain

PMID:19920124

Domain

90..178

PF00707 Translation initiation factor IF-3, C-terminal domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=infC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129674

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946225

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005734

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A707

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10506

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10506

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946225

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000499

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0501

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.64E+04

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

22624

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

5470

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

10419

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

infC

thrS-infC-rpmI-rplT

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1798642..1798682 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1718 (EcoliWiki Page)

NCBI GEO profiles for infC

microarray

GenExpDB:b1718 (EcoliWiki Page)

Summary of data for infC from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to infC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10506

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0501

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1718

EcoGene

EcoGene:EG10506

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000499

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005734

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000019136 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G30690 (score: 1.000; bootstrap: 98%)
  • AT2G24060 (score: 0.650)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027568 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011173 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1923616 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6K674 (score: 1.000; bootstrap: 71%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000151956 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000021586 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

INFC

From SHIGELLACYC

E. coli O157

INFC

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00707 Translation initiation factor IF-3, C-terminal domain

Pfam (EcoliWiki Page)

PF05198 Translation initiation factor IF-3, N-terminal domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:54364

Panther (EcoliWiki Page)

PTHR10938:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:55200

EcoCyc

EcoCyc:EG10506

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10506

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000499

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0501

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005734

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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