groL:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

groL

Gene Synonym(s)

ECK4137, b4143, JW4103, groEL, mopB, groE, hdh, mopA, tabB[1][2]

Product Desc.

GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein[2][3];

Component of GroEL-GroES Chaperonin-CPLX[3]

Chaperonin Cpn60; phage morphogenesis; GroESL large subunit GroEL, weak ATPase; binds Ap4A[4]

Product Synonyms(s)

Cpn60 chaperonin GroEL, large subunit of GroESL[1], B4143[2][1], Hdh[2][1], TabB[2][1], GroL[2][1], MopA[2][1], GroEL[2][1] , ECK4137, groEL, JW4103, mopA, b4143

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): groS[2], groS, groES

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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groL is an essential gene. GroEL binds and regulates rpoH. Cells deficient in GroEL and GroES lyse due to inability to produce cell wall as a result of the reduced level of DapA, the first enzyme in the DAP synthesis pathway. Growth below 8C is impaired due to GroESL inactivation and can be rescued by transgenic Oleispira antarctica Cpn10/60. Overproduction of GroESL can supress tig/dnaK synthetic lethality at 30 degrees C.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

groL

Mnemonic

Growth of phage

Synonyms

ECK4137, b4143, JW4103, groEL, mopB, groE, hdh, mopA, tabB[1][2]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

94.17 minutes 

MG1655: 4369048..4370694
<gbrowseImage> name=NC_000913:4369048..4370694 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4349746..4351392
<gbrowseImage> name=NC_012967:4349746..4351392 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4307783..4309429
<gbrowseImage> name=NC_012759:4307783..4309429 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4375705..4377351
<gbrowseImage> name=NC_007779:4375705..4377351 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4469410..4471056
<gbrowseImage> name=NC_010473:4469410..4471056 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

4369051

Edman degradation

PMID:9298646
PMID:9600841


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

groL(del) (Keio:JW4103)

deletion

deletion

PMID:16738554

Shigen
CGSC10954[5]

groL768(del)::kan

PMID:16738554

CGSC:101252

groLS(del)::cam

Lethality, unless the strain also contains a functional copy of the groLS operon.

PMID:12189177


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Notes

groL is essential; The Keio collection[6] lists a deletion of groL. The insertion in this strain is a duplication of the groL region.[7]


Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW4103

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGCAGCTAAAGACGTAAAATT

Primer 2:CCCATCATGCCGCCCATGCCACC

5G7

Kohara Phage

Genobase

PMID:3038334

9B1

Kohara Phage

Genobase

PMID:3038334

1D4

Kohara Phage

Genobase

PMID:3038334

cadB2231::Tn10

Linked marker

CAG18488 = CGSC7479[5]

est. P1 cotransduction: 65% [8]
Synonyms:zjd-2231::Tn10

cycA30::Tn10

Linked marker

CAG12073 = CGSC7482[5]

est. P1 cotransduction: 6% [8]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10599

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10599

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000592

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948665

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0594

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013568

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GroEL

Synonyms

Cpn60 chaperonin GroEL, large subunit of GroESL[1], B4143[2][1], Hdh[2][1], TabB[2][1], GroL[2][1], MopA[2][1], GroEL[2][1] , ECK4137, groEL, JW4103, mopA, b4143

Product description

GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein[2][3];

Component of GroEL-GroES Chaperonin-CPLX[3]

Chaperonin Cpn60; phage morphogenesis; GroESL large subunit GroEL, weak ATPase; binds Ap4A[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0042963

phage assembly

PMID:7015340

IMP: Inferred from Mutant Phenotype

P

complete

GO:0016887

ATPase activity

PMID:379350

IDA: Inferred from Direct Assay

F

complete

GO:0009408

response to heat

PMID:8349564

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of GroEL-GroES Chaperonin-CPLX

could be indirect

Protein

aceE

PMID:15690043

Experiment(s):EBI-885524

Protein

clpB

PMID:15690043

Experiment(s):EBI-885524

Protein

lon

PMID:15690043

Experiment(s):EBI-885524

Protein

narG

PMID:15690043

Experiment(s):EBI-885524

Protein

rpsB

PMID:15690043

Experiment(s):EBI-885524

Protein

ybbN

PMID:15690043

Experiment(s):EBI-885524

Protein

yibA

PMID:15690043

Experiment(s):EBI-885524

Protein

nuoG

PMID:16606699

Experiment(s):EBI-1147548

Protein

rhsA

PMID:16606699

Experiment(s):EBI-1147548

Protein

yjeS

PMID:16606699

Experiment(s):EBI-1147597

Protein

dnaK

PMID:15690043

Experiment(s):EBI-892151

Protein

grpE

PMID:15690043

Experiment(s):EBI-892151

Protein

pyrD

PMID:15690043

Experiment(s):EBI-892151

Protein

ycgR

PMID:15690043

Experiment(s):EBI-892151

Protein

yhdJ

PMID:15690043

Experiment(s):EBI-892151

Protein

grpE

PMID:19402753

LCMS(ID Probability):99.6

Protein

ybbN

PMID:19402753

MALDI(Z-score):17.053160

Protein

ycgR

PMID:19402753

LCMS(ID Probability):99.6

Protein

pyrD

PMID:19402753

LCMS(ID Probability):99.6

Protein

yhdJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

gpB of bacteriophage lambda


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Notes

In vivo substrates for GroEL have been identified by proteomic analysis. The properties of these GroEL substrates has been reviewed [9]

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAAKDVKFGN DARVKMLRGV NVLADAVKVT LGPKGRNVVL DKSFGAPTIT KDGVSVAREI
ELEDKFENMG AQMVKEVASK ANDAAGDGTT TATVLAQAII TEGLKAVAAG MNPMDLKRGI
DKAVTAAVEE LKALSVPCSD SKAIAQVGTI SANSDETVGK LIAEAMDKVG KEGVITVEDG
TGLQDELDVV EGMQFDRGYL SPYFINKPET GAVELESPFI LLADKKISNI REMLPVLEAV
AKAGKPLLII AEDVEGEALA TLVVNTMRGI VKVAAVKAPG FGDRRKAMLQ DIATLTGGTV
ISEEIGMELE KATLEDLGQA KRVVINKDTT TIIDGVGEEA AIQGRVAQIR QQIEEATSDY
DREKLQERVA KLAGGVAVIK VGAATEVEMK EKKARVEDAL HATRAAVEEG VVAGGGVALI
RVASKLADLR GQNEDQNVGI KVALRAMEAP LRQIVLNCGE EPSVVANTVK GGDGNYGYNA
ATEEYGNMID MGILDPTKVT RSALQYAASV AGLMITTECM VTDLPKNDAA DLGAAGGMGG
MGGMGGMM
Length

548

Mol. Wt

57.328 kDa

pI

4.7 (calculated)

Extinction coefficient

10,430 - 10,805 (calc based on 7 Y, 0 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A6F5

Domain

23..525

PF00118 TCP-1/cpn60 chaperonin family

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=groL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

See Help:Jmol in EcoliWiki

Text label
<jmol> <jmolApplet> <color>white</color> <uploadedFileContents >1AON.pdb</uploadedFileContents> <name></name> <script> wireframe off; spacefill off; trace off; rotate ON; cartoon; color chain; </script> </jmolApplet> </jmol>
<jmol> <jmolCheckbox > <scriptWhenChecked > rotate on; </scriptWhenChecked > <scriptWhenUnchecked > rotate off; </scriptWhenUnchecked > <checked>true</checked> <text>rotate</text> </jmolCheckbox > <jmolButton><script>reset; </script><text>reset</text></jmolButton> </jmol>









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Notes

The automated system for homologous structures in the pdb selects a fragment structure. The entry 1AON, which is a more complete structure, is shown in the structure viewer.

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131968

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948665

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013568

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6F5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10599

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10599

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948665

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000592

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0594

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

6.10E+04

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 EMG2

2180

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: Ml4

PMID: 9298646

Protein

E. coli K-12 EMG2

360

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M46

PMID: 9298646

Protein

E. coli K-12 MG1655

52165

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

11204

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

57895

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

groS

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:4369028..4369068 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b4143 (EcoliWiki Page)

NCBI GEO profiles for groL

microarray

GenExpDB:b4143 (EcoliWiki Page)

Summary of data for groL from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to groL Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10599

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0594

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4143

EcoGene

EcoGene:EG10599

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000592

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013568

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014839 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000029459 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G33210 (score: 1.000; bootstrap: 94%)
  • AT3G23990 (score: 0.721)
  • AT3G13860 (score: 0.308)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000016708 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032785 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00002025 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000016007 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000016418 (score: 0.452)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016023 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-392 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-021206-1 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3263 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0219929 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0015245 (score: 1.000; bootstrap: 100%)
  • FBgn0031728 (score: 0.619)
  • FBgn0011244 (score: 0.214)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14234-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000013122 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000340019 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000009462 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013745 (score: 0.396)
  • ENSMMUP00000008956 (score: 0.225)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000015389 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000010966 (score: 0.608)

From Inparanoid:20070104

Mus musculus

  • MGI:96242 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q43298 (score: 1.000; bootstrap: 91%)
  • P29185 (score: 0.950)
  • Q8H903 (score: 0.898)
  • Q5TKQ5 (score: 0.368)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000021826 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019912 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000040498 (score: 0.923)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR259C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC12G124 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143901 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00021743001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000034957 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

MOPA

From SHIGELLACYC

E. coli O157

MOPA

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00118 TCP-1/cpn60 chaperonin family

Superfamily (EcoliWiki Page)

SUPERFAMILY:48592

Superfamily (EcoliWiki Page)

SUPERFAMILY:52029

Panther (EcoliWiki Page)

PTHR11353:SF10

Superfamily (EcoliWiki Page)

SUPERFAMILY:54849

EcoCyc

EcoCyc:EG10599

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10599

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000592

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0594

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013568

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  7. ↑ Yamamoto, N et al. (2009) Update on the Keio collection of Escherichia coli single-gene deletion mutants. Mol. Syst. Biol. 5 335 PubMed
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  9. ↑ Ellis, RJ (2005) Chaperomics: in vivo GroEL function defined. Curr. Biol. 15 R661-3 PubMed

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