gpmA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

gpmA

Gene Synonym(s)

ECK0744, b0755, JW0738, gpm[1], gpm

Product Desc.

phosphoglyceromutase 1[2][3];

Component of phosphoglyceromutase 1[2][3]

Phosphoglycerate mutase 1, 2,3-bisphosphoglycerate-dependent; Fur regulon; dimeric[4]

Product Synonyms(s)

phosphoglyceromutase 1[1], B0755[2][1], Gpm[2][1], GpmA[2][1] , ECK0744, gpm, JW0738, b0755

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gpmA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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HT_Cmplx25_Cyt: GpmA+GpmM.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

gpmA

Mnemonic

Glycerol P mutase

Synonyms

ECK0744, b0755, JW0738, gpm[1], gpm

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

16.94 minutes 

MG1655: 786818..786066
<gbrowseImage> name=NC_000913:786066..786818 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 768224..767472
<gbrowseImage> name=NC_012967:767472..768224 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 689034..689786
<gbrowseImage> name=NC_012759:689034..689786 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 788017..787265
<gbrowseImage> name=NC_007779:787265..788017 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 839410..838658
<gbrowseImage> name=NC_010473:838658..839410 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

786069

Edman degradation

PMID:8670822
PMID:8740179
PMID:9298646
PMID:9600841


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔgpmA (Keio:JW0738)

deletion

deletion

PMID:16738554

Shigen

gpmA::Tn5KAN-2 (FB20230)

Insertion at nt 160 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20230

does not contain pKD46

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0738

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGCTGTAACTAAGCTGGTTCT

Primer 2:CCCTTCGCTTTACCCTGGTTTGC

4H1

Kohara Phage

Genobase

PMID:3038334

nadA57::Tn10

Linked marker

CAG12147 = CGSC7351[5]

est. P1 cotransduction: 80% [6]

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[5]

est. P1 cotransduction: 24% [6]
Synonyms:zbi-29::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11699

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11699

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001642

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945068

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1650

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002563

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GpmA

Synonyms

phosphoglyceromutase 1[1], B0755[2][1], Gpm[2][1], GpmA[2][1] , ECK0744, gpm, JW0738, b0755

Product description

phosphoglyceromutase 1[2][3];

Component of phosphoglyceromutase 1[2][3]

Phosphoglycerate mutase 1, 2,3-bisphosphoglycerate-dependent; Fur regulon; dimeric[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001345

F

Seeded from EcoCyc (v14.0)

complete

GO:0004619

phosphoglycerate mutase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:5.4.2.1

F

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01039

P

Seeded from EcoCyc (v14.0)

complete

GO:0016052

carbohydrate catabolic process

P

Missing: evidence, reference

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005952

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0324

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001345

P

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

GO:0016868

intramolecular transferase activity, phosphotransferases

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005952

F

Seeded from EcoCyc (v14.0)

complete

GO:0046538

2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01039

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of phosphoglyceromutase 1

could be indirect

Protein

rpmB

PMID:16606699

Experiment(s):EBI-1137861

Protein

livK

PMID:16606699

Experiment(s):EBI-1137861

Protein

pepD

PMID:16606699

Experiment(s):EBI-1137861

Protein

aroG

PMID:16606699

Experiment(s):EBI-1137861

Protein

thrS

PMID:16606699

Experiment(s):EBI-1137861

Protein

aslA

PMID:16606699

Experiment(s):EBI-1137861

Protein

purC

PMID:16606699

Experiment(s):EBI-1137861

Protein

nadE

PMID:16606699

Experiment(s):EBI-1137861

Protein

mlc

PMID:16606699

Experiment(s):EBI-1137861
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAVTKLVLVR HGESQWNKEN RFTGWYDVDL SEKGVSEAKA AGKLLKEEGY SFDFAYTSVL
KRAIHTLWNV LDELDQAWLP VEKSWKLNER HYGALQGLNK AETAEKYGDE QVKQWRRGFA
VTPPELTKDD ERYPGHDPRY AKLSEKELPL TESLALTIDR VIPYWNETIL PRMKSGERVI
IAAHGNSLRA LVKYLDNMSE EEILELNIPT GVPLVYEFDE NFKPLKRYYL GNADEIAAKA
AAVANQGKAK
Length

250

Mol. Wt

28.556 kDa

pI

5.7 (calculated)

Extinction coefficient

56,380 (calc based on 12 Y, 7 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P62707

Domain

5..191

PF00300 Phosphoglycerate mutase family

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=gpmA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128723

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945068

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002563

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P62707

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11699

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11699

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945068

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001642

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1650

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.44E+04

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

760.082+/-8.09

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

1.079787234

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

960

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: Ml3

PMID: 9298646

Protein

E. coli K-12 MG1655

29287

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

11670

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

21706

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

gpmA

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:786798..786838 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0755 (EcoliWiki Page)

NCBI GEO profiles for gpmA

microarray

GenExpDB:b0755 (EcoliWiki Page)

Summary of data for gpmA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to gpmA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11699

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1650

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0755

EcoGene

EcoGene:EG11699

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001642

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002563

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000015800 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000005507 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G22170 (score: 1.000; bootstrap: 100%)
  • AT1G78050 (score: 0.632)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000016874 (score: 1.000; bootstrap: 97%)
  • ENSBTAP00000019336 (score: 0.585)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000013328 (score: 1.000; bootstrap: 97%)
  • ENSCAFP00000004259 (score: 0.567)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016603 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000008164 (score: 0.487)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-652 (score: 1.000; bootstrap: 93%)
  • ZDB-GENE-030131-1827 (score: 1.000; bootstrap: 94%)
  • ZDB-CDNA-040425-653 (score: 1.000; bootstrap: 94%)
  • ZDB-CDNA-040425-1299 (score: 0.869)
  • ZDB-GENE-030131-5376 (score: 0.869)
  • ZDB-GENE-040519-1 (score: 0.752)
  • ZDB-CDNA-040425-654 (score: 0.575)
  • ZDB-GENE-040116-6 (score: 0.575)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231354 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0014869 (score: 1.000; bootstrap: 99%)
  • FBgn0011270 (score: 0.512)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14392-PA (score: 1.000; bootstrap: 99%)
  • GA14593-PA (score: 0.477)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000021309 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000351067 (score: 1.000; bootstrap: 96%)
  • ENSP00000306191 (score: 1.000; bootstrap: 96%)
  • ENSP00000348237 (score: 0.986)
  • ENSP00000334304 (score: 0.889)
  • ENSP00000348804 (score: 0.889)
  • ENSP00000297283 (score: 0.597)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000026333 (score: 1.000; bootstrap: 97%)
  • ENSMMUP00000013841 (score: 0.653)
  • ENSMMUP00000003245 (score: 0.588)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000005228 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000017399 (score: 0.580)
  • ENSMODP00000022556 (score: 0.384)
  • ENSMODP00000015821 (score: 0.155)

From Inparanoid:20070104

Mus musculus

  • MGI:3645709 (score: 1.000; bootstrap: 97%)
  • MGI:3643310 (score: 1.000; bootstrap: 97%)
  • MGI:97552 (score: 0.991)
  • MGI:1933118 (score: 0.548)

From Inparanoid:20070104

Oryza gramene

  • Q67UJ0 (score: 1.000; bootstrap: 100%)
  • Q6Z8J0 (score: 0.643)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000032683 (score: 1.000; bootstrap: 93%)
  • ENSPTRP00000004915 (score: 0.187)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018227 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKL152C (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC26F16 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143399 (score: 1.000; bootstrap: 95%)
  • NEWSINFRUP00000153098 (score: 0.715)
  • NEWSINFRUP00000182800 (score: 0.491)
  • NEWSINFRUP00000181195 (score: 0.056)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026289001 (score: 1.000; bootstrap: 97%)
  • GSTENP00016506001 (score: 0.750)
  • GSTENP00011651001 (score: 0.509)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000049101 (score: 1.000; bootstrap: 76%)
  • ENSXETP00000039940 (score: 0.578)

From Inparanoid:20070104

Shigella flexneri

GPMA

From SHIGELLACYC

E. coli O157

GPMA

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:53254

Panther (EcoliWiki Page)

PTHR11931:SF0

Pfam (EcoliWiki Page)

PF00300 Phosphoglycerate mutase family

EcoCyc

EcoCyc:EG11699

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11699

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001642

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1650

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002563

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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