gnd:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

gnd

Gene Synonym(s)

ECK2024, b2029, JW2011[1], JW2011

Product Desc.

Gnd[2][3];

Component of 6-phosphogluconate dehydrogenase (decarboxylating)[2][3]

Gluconate-6-phosphate dehydrogenase, decarboxylating[4]

Product Synonyms(s)

gluconate-6-phosphate dehydrogenase, decarboxylating[1], B2029[2][1], Gnd[2][1] , ECK2024, JW2011, b2029

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gnd[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

gnd

Mnemonic

Gluconate-P dehydrogenase

Synonyms

ECK2024, b2029, JW2011[1], JW2011

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

45.22 minutes, 45.22 minutes 

MG1655: 2099292..2097886
<gbrowseImage> name=NC_000913:2097886..2099292 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2031269..2029863
<gbrowseImage> name=NC_012967:2029863..2031269 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1990369..1991775
<gbrowseImage> name=NC_012759:1990369..1991775 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2103405..2101999
<gbrowseImage> name=NC_007779:2101999..2103405 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2190300..2188894
<gbrowseImage> name=NC_010473:2188894..2190300 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

gndL325Q

L325Q

(in strain: ECOR 69)

Strain variation; seeded from UniProt:P00350

gndI330S

I330S

(in strain: ECOR 10)

Strain variation; seeded from UniProt:P00350

gndS422A

S422A

(in strain: ECOR 10, ECOR 65, ECOR 68, ECOR 69 and ECOR 70)

Strain variation; seeded from UniProt:P00350

gndV52D

V52D

(in strain: ECOR 10)

Strain variation; seeded from UniProt:P00350

gndY55F

Y55F

(in strain: ECOR 10)

Strain variation; seeded from UniProt:P00350

gndIGT123YRY

IGT123YRY

(in strain: O7:K1 / VW187)

Strain variation; seeded from UniProt:P00350

gndV170F

V170F

(in strain: ECOR 10)

Strain variation; seeded from UniProt:P00350

gndA117S

A117S

(in strain: ECOR 70)

Strain variation; seeded from UniProt:P00350

gndD350A

D350A

(in strain: ECOR 10 and ECOR 69)

Strain variation; seeded from UniProt:P00350

gndQ369R

Q369R

(in strain: ECOR 10)

Strain variation; seeded from UniProt:P00350

gndD313N

D313N

(in strain: ECOR 67)

Strain variation; seeded from UniProt:P00350

gndA315G

A315G

(in strain: ECOR 70)

Strain variation; seeded from UniProt:P00350

gndA308G

A308G

(in strain: ECOR 68)

Strain variation; seeded from UniProt:P00350

gndD294E

D294E

(in strain: ECOR 70)

Strain variation; seeded from UniProt:P00350

gndT211S

T211S

(in strain: ECOR 10 and ECOR 69)

Strain variation; seeded from UniProt:P00350

gndA216T

A216T

(in strain: ECOR 67)

Strain variation; seeded from UniProt:P00350

gndA175S

A175S

(in strain: ECOR 45)

Strain variation; seeded from UniProt:P00350

gndN209S

N209S

(in strain: ECOR 68)

Strain variation; seeded from UniProt:P00350

gndF32Y

F32Y

(in strain: ECOR 70)

Strain variation; seeded from UniProt:P00350

gndN102K

N102K

(in strain: ECOR 65)

Strain variation; seeded from UniProt:P00350

gndT39Q

T39Q

(in strain: O7:K1 / VW187)

Strain variation; seeded from UniProt:P00350

gndS2L

S2L

(in strain: ECOR 70)

Strain variation; seeded from UniProt:P00350

Δgnd (Keio:JW2011)

deletion

deletion

PMID:16738554

Shigen
CGSC9656[5]

Δgnd::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

gnd-1

CGSC:8113

Δgnd-727::kan

PMID:16738554

CGSC:101228


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2011

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCTCCAAGCAACAGATCGGCGT

Primer 2:CCATCCAGCCATTCGGTATGGAA

21H10

Kohara Phage

Genobase

PMID:3038334

zef-3129::Tn10

Linked marker

CAG12099 = CGSC7397[5]

est. P1 cotransduction: 60% [6]
Synonyms:zee-3129::Tn10

zbd-3104::Tn10

Linked marker

CAG12021 = CGSC7344[5]

est. P1 cotransduction: % [6]
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10411

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10411

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000404

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946554

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0406

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006737

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Gnd

Synonyms

gluconate-6-phosphate dehydrogenase, decarboxylating[1], B2029[2][1], Gnd[2][1] , ECK2024, JW2011, b2029

Product description

Gnd[2][3];

Component of 6-phosphogluconate dehydrogenase (decarboxylating)[2][3]

Gluconate-6-phosphate dehydrogenase, decarboxylating[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0004616

phosphogluconate dehydrogenase (decarboxylating) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006113

F

Seeded from EcoCyc (v14.0)

complete

GO:0004616

phosphogluconate dehydrogenase (decarboxylating) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006114

F

Seeded from EcoCyc (v14.0)

complete

GO:0004616

phosphogluconate dehydrogenase (decarboxylating) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006115

F

Seeded from EcoCyc (v14.0)

complete

GO:0004616

phosphogluconate dehydrogenase (decarboxylating) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006183

F

Seeded from EcoCyc (v14.0)

complete

GO:0004616

phosphogluconate dehydrogenase (decarboxylating) activity

PMID:4869212

IMP: Inferred from Mutant Phenotype

F

complete

GO:0004616

phosphogluconate dehydrogenase (decarboxylating) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006184

F

Seeded from EcoCyc (v14.0)

complete

GO:0004616

phosphogluconate dehydrogenase (decarboxylating) activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.1.1.44

F

Seeded from EcoCyc (v14.0)

complete

GO:0006098

pentose-phosphate shunt

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006113

P

Seeded from EcoCyc (v14.0)

complete

GO:0006098

pentose-phosphate shunt

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006114

P

Seeded from EcoCyc (v14.0)

complete

GO:0006098

pentose-phosphate shunt

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006115

P

Seeded from EcoCyc (v14.0)

complete

GO:0006098

pentose-phosphate shunt

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006183

P

Seeded from EcoCyc (v14.0)

complete

GO:0006098

pentose-phosphate shunt

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006184

P

Seeded from EcoCyc (v14.0)

complete

GO:0006098

pentose-phosphate shunt

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0570

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

P

Seeded from EcoCyc (v14.0)

complete

GO:0019521

D-gluconate metabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0311

P

Seeded from EcoCyc (v14.0)

complete

GO:0050661

NADP or NADPH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006113

F

Seeded from EcoCyc (v14.0)

complete

GO:0050661

NADP or NADPH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006114

F

Seeded from EcoCyc (v14.0)

complete

GO:0050662

coenzyme binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013328

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006113

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006114

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006115

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006183

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006184

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of 6-phosphogluconate dehydrogenase (decarboxylating)

could be indirect

Protein

nadE

PMID:16606699

Experiment(s):EBI-1141682

Protein

gltD

PMID:19402753

MALDI(Z-score):23.195878

Protein

gltI

PMID:19402753

LCMS(ID Probability):99.6

Protein

gcvP

PMID:19402753

LCMS(ID Probability):99.6

Protein

gabD

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSKQQIGVVG MAVMGRNLAL NIESRGYTVS IFNRSREKTE EVIAENPGKK LVPYYTVKEF
VESLETPRRI LLMVKAGAGT DAAIDSLKPY LDKGDIIIDG GNTFFQDTIR RNRELSAEGF
NFIGTGVSGG EEGALKGPSI MPGGQKEAYE LVAPILTKIA AVAEDGEPCV TYIGADGAGH
YVKMVHNGIE YGDMQLIAEA YSLLKGGLNL TNEELAQTFT EWNNGELSSY LIDITKDIFT
KKDEDGNYLV DVILDEAANK GTGKWTSQSA LDLGEPLSLI TESVFARYIS SLKDQRVAAS
KVLSGPQAQP AGDKAEFIEK VRRALYLGKI VSYAQGFSQL RAASEEYNWD LNYGEIAKIF
RAGCIIRAQF LQKITDAYAE NPQIANLLLA PYFKQIADDY QQALRDVVAY AVQNGIPVPT
FSAAVAYYDS YRAAVLPANL IQAQRDYFGA HTYKRIDKEG VFHTEWLD
Length

468

Mol. Wt

51.482 kDa

pI

4.9 (calculated)

Extinction coefficient

59,250 - 59,500 (calc based on 25 Y, 4 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

179..467

PF00393 6-phosphogluconate dehydrogenase, C-terminal domain

PMID:19920124

Domain

3..175

PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=gnd taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129970

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946554

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006737

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P00350

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10411

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10411

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946554

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000404

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0406

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.42E+04

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

0.504+/-0.018

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.81970128

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

27814

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

9767

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

18390

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

gnd

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2099272..2099312 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2029 (EcoliWiki Page)

NCBI GEO profiles for gnd

microarray

GenExpDB:b2029 (EcoliWiki Page)

Summary of data for gnd from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2099212..273407) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ01; Well:G11[7]

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Notes

Accessions Related to gnd Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10411

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0406

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2029

EcoGene

EcoGene:EG10411

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000404

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006737

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012857 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017581 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G02360 (score: 1.000; bootstrap: 100%)
  • AT5G41670 (score: 0.541)
  • AT1G64190 (score: 0.537)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000017988 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037203 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00012015 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024709 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000015556 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2807 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3754 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-246 (score: 0.886)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215011 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0004654 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17642-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000004417 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000270776 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000030320 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003239 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:97553 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q9LI00 (score: 1.000; bootstrap: 100%)
  • Q7FRX8 (score: 1.000; bootstrap: 100%)
  • O81238 (score: 0.884)
  • O81237 (score: 0.863)
  • Q5VS01 (score: 0.698)
  • Q7Y248 (score: 0.385)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000000249 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000037076 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR183W (score: 1.000; bootstrap: 100%)
  • YGR256W (score: 0.816)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC6606 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000146059 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00028241001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000047970 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

GND

From SHIGELLACYC

E. coli O157

GND

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00393 6-phosphogluconate dehydrogenase, C-terminal domain

Pfam (EcoliWiki Page)

PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR11811:SF19

EcoCyc

EcoCyc:EG10411

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10411

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000404

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0406

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006737

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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