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On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	glpT
Gene Synonym(s)	ECK2232, b2240, JW2234^[1], JW2234
Product Desc.	GlpT glycerol-3-P MFS transporter^[2]^[3] sn-Glycerol-3-phosphate permease; fosfomycin sensitivity^[4]
Product Synonyms(s)	sn-glycerol-3-phosphate transporter^[1], B2240^[2]^[1], GlpT^[2]^[1] , ECK2232, JW2234, b2240
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): glpTQ^[2], OP00304
Regulation/Activity
Quick Links
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Notes

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GlpT exhanges cytoplasmic phosphate for glycerol phosphate. GlpT has 12 TM regions. Major Facilitator Superfamily (MFS). GlpT also transports some synthetic organophosphates. cAMP regulon.^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	glpT
Mnemonic	Glycerol phosphate
Synonyms	ECK2232, b2240, JW2234^[1], JW2234
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	50.63 minutes	MG1655: 2350396..2349038 <gbrowseImage> name=NC_000913:2349038..2350396 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 2299082..2297724 <gbrowseImage> name=NC_012967:2297724..2299082 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 2234843..2236201 <gbrowseImage> name=NC_012759:2234843..2236201 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 2357044..2355686 <gbrowseImage> name=NC_007779:2355686..2357044 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 2441384..2440026 <gbrowseImage> name=NC_010473:2440026..2441384 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
glpT(del) (Keio:JW2234)	deletion	deletion			PMID:16738554	Shigen
glpT::Tn5KAN-2 (FB20721)	Insertion at nt 822 in Plus orientation				PMID:15262929	E. coli Genome Project:FB20721	does not contain pKD46
glpT::Tn5KAN-2 (FB20722)	Insertion at nt 822 in Plus orientation				PMID:15262929	E. coli Genome Project:FB20722	contains pKD46
glpT13						CGSC:10041
glpT6						CGSC:11705
glpt^-			Resistant to	Phosphonomycin resistant	PMID:4555418
glpT^-(DEL)	Deletion	Deletion	Resistant to	Resistant to Fosfomycin	PMID:363686	Strain: TS104	Parent Strain: TS100
glpT^-(DEL)	Deletion	Deletion	Resistant to	Resistant to Fosfomycin	PMID:363686	Strain: LA3430	LA3430 underwent a spontaneous mutation Parent Strain: CSH74
glpT^-(DEL)	Point Mutation		Sensitivity to	Sensitive to Fosfomycin	PMID:363686	Strain: LA5004	Parent Strain: TS100
glpT			Resistant to	Resistance to Fosfomycin	PMID:770459	Strain: LA3401	Spontaneously mutated Parent Strain: 72
glpT			Resistant to	Resistance to Fosfomycin	PMID:770459	Strain: LA3402	Spontaneously mutated Parent Strain: 72
glpT			Resistant to	Resistance to Fosfomycin	PMID:770459	Strain: LA3403	Spontaneously mutated Parent Strain: 72
glpT			Resistant to	Resistance to Fosfomycin	PMID:770459	Strain: LA3404	Spontaneously mutated Parent Strain: 72
glpT			Resistant to	Resistance to Fosfomycin	PMID:770459	Strain: LA3405	Spontaneously mutated Parent Strain: 72
glpT			Resistant to	Resistance to Fosfomycin	PMID:217668	Strain: DL39
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW2234	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCTTGAGTATTTTTAAACCAGC Primer 2:CCGCCTCCGTTGCGTTCTTGCAG
2E8	Kohara Phage	Genobase	PMID:3038334
22C4	Kohara Phage	Genobase	PMID:3038334
zfa-723::Tn10	Linked marker	CAG12178 gyrA+ = CGSC7526^[5]	est. P1 cotransduction: 82% ^[6] Synonyms:zei-723::Tn10, zfa-723::Tn10 nnnThe original CAG12178 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).
zfb-223::Tn10	Linked marker	CAG18484 = CGSC7406^[5]	est. P1 cotransduction: 18% ^[6] Synonyms:zej-223::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10401	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10401	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000394	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:946704	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0396	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007401	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	GlpT
Synonyms	sn-glycerol-3-phosphate transporter^[1], B2240^[2]^[1], GlpT^[2]^[1] , ECK2232, JW2234, b2240
Product description	GlpT glycerol-3-P MFS transporter^[2]^[3] sn-Glycerol-3-phosphate permease; fosfomycin sensitivity^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	PMID:3329281			C	Seeded from EcoCyc (v14.0)	Missing: evidence
	GO:0006071	glycerol metabolic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0319	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015794	glycerol-3-phosphate transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005267	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000849	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005267	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0812	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9909	C	Seeded from EcoCyc (v14.0)	complete
	GO:0055085	transmembrane transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011701	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source
plasma membrane	C-terminus localized in the cytoplasm with 12 predicted transmembrane domains	Daley et al. (2005) ^[7]
plasma membrane			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MLSIFKPAPH KARLPAAEID PTYRRLRWQI FLGIFFGYAA YYLVRKNFAL AMPYLVEQGF SRGDLGFALS GISIAYGFSK FIMGSVSDRS NPRVFLPAGL ILAAAVMLFM GFVPWATSSI AVMFVLLFLC GWFQGMGWPP CGRTMVHWWS QKERGGIVSV WNCAHNVGGG IPPLLFLLGM AWFNDWHAAL YMPAFCAILV ALFAFAMMRD TPQSCGLPPI EEYKNDYPDD YNEKAEQELT AKQIFMQYVL PNKLLWYIAI ANVFVYLLRY GILDWSPTYL KEVKHFALDK SSWAYFLYEY AGIPGTLLCG WMSDKVFRGN RGATGVFFMT LVTIATIVYW MNPAGNPTVD MICMIVIGFL IYGPVMLIGL HALELAPKKA AGTAAGFTGL FGYLGGSVAA SAIVGYTVDF FGWDGGFMVM IGGSILAVIL LIVVMIGEKR RHEQLLQERN GG
Length	452
Mol. Wt	50.312 kDa
pI	8.6 (calculated)
Extinction coefficient	115,280 - 116,155 (calc based on 22 Y, 15 W, and 7 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	34..400	PF07690 Major Facilitator Superfamily		PMID:19920124
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<motif_map/>

Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=glpT taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130175	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946704	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007401	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P08194	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10401	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10401	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946704	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000394	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0396	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MG1655	49	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	2^a	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
Protein	E. coli K-12 MG1655	14^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
glpTQ
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2350376..2350416 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b2240 (EcoliWiki Page)	NCBI GEO profiles for glpT
microarray	GenExpDB:b2240 (EcoliWiki Page)	Summary of data for glpT from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to glpT Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10401	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0396	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b2240
EcoGene	EcoGene:EG10401	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000394	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007401	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Apis mellifera	ENSAPMP00000007808 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Arabidopsis thaliana	AT4G25220 (score: 1.000; bootstrap: 94%) AT1G30560 (score: 0.835) AT3G47420 (score: 0.585) AT2G13100 (score: 0.477) AT4G17550 (score: 0.475)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000010624 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00037192 (score: 1.000; bootstrap: 67%) WBGene00037193 (score: 0.577) WBGene00037194 (score: 0.294) WBGene00041164 (score: 0.262)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00011717 (score: 1.000; bootstrap: 69%) WBGene00011688 (score: 1.000; bootstrap: 66%) WBGene00011718 (score: 0.578) WBGene00011719 (score: 0.535)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000005907 (score: 1.000; bootstrap: 100%) ENSCAFP00000016164 (score: 1.000; bootstrap: 100%) ENSCAFP00000015379 (score: 0.542)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000017130 (score: 1.000; bootstrap: 95%)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-040426-2230 (score: 1.000; bootstrap: 99%) ZDB-CDNA-040425-3177 (score: 1.000; bootstrap: 99%) ZDB-CDNA-040425-1755 (score: 0.659) ZDB-GENE-040426-827 (score: 0.659)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0034611 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000012492 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Homo sapiens	ENSP00000339048 (score: 1.000; bootstrap: 98%)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000022206 (score: 1.000; bootstrap: 98%)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000016672 (score: 1.000; bootstrap: 96%)	From Inparanoid:20070104
Mus musculus	MGI:1316650 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Oryza gramene	Q6H8H1 (score: 1.000; bootstrap: 86%) Q949F1 (score: 0.979) Q6ZD99 (score: 0.462) Q7X8K1 (score: 0.462) Q7FS87 (score: 0.459) Q8H607 (score: 0.430)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000007476 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000015810 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000157547 (score: 1.000; bootstrap: 99%) NEWSINFRUP00000152151 (score: 0.611)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00022082001 (score: 1.000; bootstrap: 100%) GSTENP00012957001 (score: 0.634)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000022215 (score: 1.000; bootstrap: 98%)	From Inparanoid:20070104
Shigella flexneri	GLPT	From SHIGELLACYC
E. coli O157	GLPT	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Superfamily (EcoliWiki Page)	SUPERFAMILY:103473
Pfam (EcoliWiki Page)	PF07690 Major Facilitator Superfamily
EcoCyc	EcoCyc:EG10401	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10401	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000394	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0396	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007401	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

glpT:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to glpT Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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