glpT:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
glpT |
|---|---|
| Mnemonic |
Glycerol phosphate |
| Synonyms |
ECK2232, b2240, JW2234[1], JW2234 |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
50.63 minutes |
MG1655: 2350396..2349038 |
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NC_012967: 2299082..2297724 |
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NC_012759: 2234843..2236201 |
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W3110 |
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W3110: 2357044..2355686 |
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DH10B: 2441384..2440026 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
glpT(del) (Keio:JW2234) |
deletion |
deletion |
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glpT::Tn5KAN-2 (FB20721) |
Insertion at nt 822 in Plus orientation |
does not contain pKD46 | |||||
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glpT::Tn5KAN-2 (FB20722) |
Insertion at nt 822 in Plus orientation |
contains pKD46 | |||||
|
glpT13 |
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glpT6 |
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glpt - |
Resistant to |
Phosphonomycin resistant |
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glpT-(DEL) |
Deletion |
Deletion |
Resistant to |
Resistant to Fosfomycin |
Strain: TS104 |
Parent Strain: TS100 | |
|
glpT-(DEL) |
Deletion |
Deletion |
Resistant to |
Resistant to Fosfomycin |
Strain: LA3430 |
LA3430 underwent a spontaneous mutation Parent Strain: CSH74 | |
|
glpT-(DEL) |
Point Mutation |
Sensitivity to |
Sensitive to Fosfomycin |
Strain: LA5004 |
Parent Strain: TS100 | ||
|
glpT |
Resistant to |
Resistance to Fosfomycin |
Strain: LA3401 |
Spontaneously mutated Parent Strain: 72 | |||
|
glpT |
Resistant to |
Resistance to Fosfomycin |
Strain: LA3402 |
Spontaneously mutated Parent Strain: 72 | |||
|
glpT |
Resistant to |
Resistance to Fosfomycin |
Strain: LA3403 |
Spontaneously mutated Parent Strain: 72 | |||
|
glpT |
Resistant to |
Resistance to Fosfomycin |
Strain: LA3404 |
Spontaneously mutated Parent Strain: 72 | |||
|
glpT |
Resistant to |
Resistance to Fosfomycin |
Strain: LA3405 |
Spontaneously mutated Parent Strain: 72 | |||
|
glpT |
Resistant to |
Resistance to Fosfomycin |
Strain: DL39 |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW2234 |
Plasmid clone |
Status:Clone OK Primer 1:GCCTTGAGTATTTTTAAACCAGC Primer 2:CCGCCTCCGTTGCGTTCTTGCAG | |
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Kohara Phage |
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Kohara Phage |
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|
Linked marker |
est. P1 cotransduction: 82% [11] | ||
|
Linked marker |
est. P1 cotransduction: 18% [11] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ Venkateswaran, PS & Wu, HC (1972) Isolation and characterization of a phosphonomycin-resistant mutant of Escherichia coli K-12. J. Bacteriol. 110 935-44 PubMed
- ↑ 5.0 5.1 5.2 Argast, M et al. (1978) A second transport system for sn-glycerol-3-phosphate in Escherichia coli. J. Bacteriol. 136 1070-83 PubMed
- ↑ 6.0 6.1 6.2 6.3 6.4 Silhavy, TJ et al. (1976) Periplasmic protein related to the sn-glycerol-3-phosphate transport system of Escherichia coli. J. Bacteriol. 126 951-8 PubMed
- ↑ Onaya, T et al. (1978) Evidence for activation by beta2-adrenergic receptors of adenosine 3',5'-monophosphate formation in Ehrlich ascites tumor cells. Endocrinology 103 1122-7 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 9.0 9.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 10.0 10.1 CGSC: The Coli Genetics Stock Center
- ↑ 11.0 11.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
