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On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	ggt
Gene Synonym(s)	ECK3431, b3447, JW3412^[1], JW3412
Product Desc.	γ-glutamyltranspeptidase^[2]^[3] gamma-Glutamyltranspeptidase, glutathione metabolism; Ntn hydrolase; autocatalytic processing into two subunits; periplasmic^[4]
Product Synonyms(s)	gamma-glutamyltranspeptidase^[1], B3447^[2]^[1], Ggt^[2]^[1] , ECK3431, JW3412, b3447
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ggt^[2]
Regulation/Activity
Quick Links
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Notes

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Small subunit is residues 26-390; large subunit is residues 391-580. T391 is N-terminal nucleophile. False positive lipoprotein prediction, verified SPI substrate.^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	ggt
Mnemonic	Gamma-Glutamyltranspeptidase
Synonyms	ECK3431, b3447, JW3412^[1], JW3412
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	77.23 minutes	MG1655: 3584846..3583104 <gbrowseImage> name=NC_000913:3583104..3584846 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 3517499..3515757 <gbrowseImage> name=NC_012967:3515757..3517499 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 3471598..3473340 <gbrowseImage> name=NC_012759:3471598..3473340 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 4053592..4055334 <gbrowseImage> name=NC_007779:4053592..4055334 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 3682591..3680849 <gbrowseImage> name=NC_010473:3680849..3682591 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
Coding Start (SO:0000323)	MG1655	3583107	Edman degradation	PMID:2570061
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Description	Reference	Availability	Comments
Δggt (Keio:JW3412)	deletion	deletion		PMID:16738554	Shigen CGSC10536^[5]
ggt::Tn5KAN-I-SceI (FB21212)	Insertion at nt 1233 in Plus orientation			PMID:15262929	E. coli Genome Project:FB21212	contains pKD46
ggtR513A		R513A	Not processed into its subunits			seeded from UniProt:P18956
ggtR571G		R571G	Not processed into its subunits			seeded from UniProt:P18956
Δggt-777::kan				PMID:16738554	CGSC:101128
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW3412	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCATAAAACCGACGTTTTTACG Primer 2:CCGTACCCCGCCGTTAAATCATC
5B10	Kohara Phage	Genobase	PMID:3038334
10F5	Kohara Phage	Genobase	PMID:3038334
glgP721::Tn10	Linked marker	CAG18638 = CGSC7451^[5]	est. P1 cotransduction: 49% ^[6] Synonyms:zhg-3086::Tn10, zhh-21::Tn10
zhg-50::Tn10	Linked marker	CAG18450 = CGSC7450^[5]	est. P1 cotransduction: 76% ^[6] Synonyms:zhf-50::Tn10, zhf-5::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10374	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10374	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000367	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:947947	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0369	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011257	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	Ggt
Synonyms	gamma-glutamyltranspeptidase^[1], B3447^[2]^[1], Ggt^[2]^[1] , ECK3431, JW3412, b3447
Product description	γ-glutamyltranspeptidase^[2]^[3] gamma-Glutamyltranspeptidase, glutathione metabolism; Ntn hydrolase; autocatalytic processing into two subunits; periplasmic^[4]
EC number (for enzymes)	2.3.2.2^[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0030288	outer membrane-bounded periplasmic space				C	Seeded from Riley et al 2006 ^[1].	Missing: evidence, reference
	GO:0006750	glutathione biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0317	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008415	acyltransferase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0012	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016740	transferase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0808	F	Seeded from EcoCyc (v14.0)	complete
	GO:0042597	periplasmic space	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0574	C	Seeded from EcoCyc (v14.0)	complete
	GO:0042597	periplasmic space	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0200	C	Seeded from EcoCyc (v14.0)	complete
	GO:0042597	periplasmic space	PMID:2877975	IDA: Inferred from Direct Assay		C		complete
	GO:0036374	glutathione hydrolase activity	PMID:2877974	IDA: Inferred from Direct Assay		F	Table 2	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Evidence	Reference/Source
Periplasm	PMID:2570061	EchoLocation:ggt
periplasm		From EcoCyc^[3]
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MIKPTFLRRV AIAALLSGSC FSAAAAPPAP PVSYGVEEDV FHPVRAKQGM VASVDATATQ VGVDILKEGG NAVDAAVAVG YALAVTHPQA GNLGGGGFML IRSKNGNTTA IDFREMAPAK ATRDMFLDDQ GNPDSKKSLT SHLASGTPGT VAGFSLALDK YGTMPLNKVV QPAFKLARDG FIVNDALADD LKTYGSEVLP NHENSKAIFW KEGEPLKKGD TLVQANLAKS LEMIAENGPD EFYKGTIAEQ IAQEMQKNGG LITKEDLAAY KAVERTPISG DYRGYQVYSM PPPSSGGIHI VQILNILENF DMKKYGFGSA DAMQIMAEAE KYAYADRSEY LGDPDFVKVP WQALTNKAYA KSIADQIDIN KAKPSSEIRP GKLAPYESNQ TTHYSVVDKD GNAVAVTYTL NTTFGTGIVA GESGILLNNQ MDDFSAKPGV PNVYGLVGGD ANAVGPNKRP LSSMSPTIVV KDGKTWLVTG SPGGSRIITT VLQMVVNSID YGLNVAEATN APRFHHQWLP DELRVEKGFS PDTLKLLEAK GQKVALKEAM GSTQSIMVGP DGELYGASDP RSVDDLTAGY
Length	580
Mol. Wt	61.768 kDa
pI	5.3 (calculated)
Extinction coefficient	53,290 - 53,415 (calc based on 21 Y, 4 W, and 1 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
motif	1-25	UniProt Manual:Signal Peptides	UniProt:P18956
Domain	63..574	PF01019 Gamma-glutamyltranspeptidase		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ggt taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131319	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947947	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011257	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P18956	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10374	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10374	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947947	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000367	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0369	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	Ecoli K-12	3.027+/-0.046	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.091561424	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	27	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	360	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	6^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
ggt
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3584826..3584866 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b3447 (EcoliWiki Page)	NCBI GEO profiles for ggt
microarray	GenExpDB:b3447 (EcoliWiki Page)	Summary of data for ggt from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
	GFP Fusion	Intergenic region (3584384..3584591) fused to gfpmut2.	OpenBioSystems	GFP fusion described in Zaslaver, et al. Plate:109-AZ18; Well:C7^[7]
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Notes

Accessions Related to ggt Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10374	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0369	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b3447
EcoGene	EcoGene:EG10374	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000367	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011257	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000014465 (score: 1.000; bootstrap: 100%) ENSANGP00000028892 (score: 0.425) ENSANGP00000010230 (score: 0.177)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000022619 (score: 1.000; bootstrap: 96%)	From Inparanoid:20070104
Arabidopsis thaliana	AT4G29210 (score: 1.000; bootstrap: 100%) AT4G39650 (score: 0.256) AT4G39640 (score: 0.243)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000017688 (score: 1.000; bootstrap: 92%)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00027988 (score: 1.000; bootstrap: 99%) WBGene00038403 (score: 0.287) WBGene00040697 (score: 0.180) WBGene00034388 (score: 0.073)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00011393 (score: 1.000; bootstrap: 99%) WBGene00019204 (score: 0.296) WBGene00016906 (score: 0.205) WBGene00012416 (score: 0.144)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000020481 (score: 1.000; bootstrap: 85%)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000003852 (score: 1.000; bootstrap: 79%) ENSCINP00000003839 (score: 0.702)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-040426-1388 (score: 1.000; bootstrap: 100%) ZDB-CDNA-040425-2322 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0030796 (score: 1.000; bootstrap: 100%) FBgn0030361 (score: 0.093)	From Inparanoid:20070104
Drosophila pseudoobscura	GA19613-PA (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000010584 (score: 1.000; bootstrap: 78%) ENSGALP00000010490 (score: 0.107)	From Inparanoid:20070104
Homo sapiens	ENSP00000248923 (score: 1.000; bootstrap: 78%) ENSP00000255845 (score: 0.943) ENSP00000249062 (score: 0.902) ENSP00000337587 (score: 0.204) ENSP00000215938 (score: 0.198) ENSP00000340189 (score: 0.181) ENSP00000341691 (score: 0.172) ENSP00000300892 (score: 0.157) ENSP00000330080 (score: 0.137)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000003059 (score: 1.000; bootstrap: 73%) ENSMMUP00000007861 (score: 0.056)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000003193 (score: 1.000; bootstrap: 75%)	From Inparanoid:20070104
Mus musculus	MGI:95706 (score: 1.000; bootstrap: 82%) MGI:1346063 (score: 0.132)	From Inparanoid:20070104
Oryza gramene	Q5ZEJ6 (score: 1.000; bootstrap: 100%) Q5ZEJ5 (score: 0.737) Q7XV08 (score: 0.278)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000023020 (score: 1.000; bootstrap: 72%)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000025315 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Saccharomyces cerevisiae	YLR299W (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPAC6649 (score: 1.000; bootstrap: 100%) SPAC56E46c (score: 0.226)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000165566 (score: 1.000; bootstrap: 82%) NEWSINFRUP00000135107 (score: 0.227) NEWSINFRUP00000165565 (score: 0.081)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00017285001 (score: 1.000; bootstrap: 95%) GSTENP00021645001 (score: 0.539) GSTENP00007131001 (score: 0.298) GSTENP00017284001 (score: 0.062)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000024628 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Shigella flexneri	GGT	From SHIGELLACYC
E. coli O157	GGT	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF01019 Gamma-glutamyltranspeptidase
Panther (EcoliWiki Page)	PTHR11686:SF15
Superfamily (EcoliWiki Page)	SUPERFAMILY:56235
EcoCyc	EcoCyc:EG10374	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10374	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000367	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0369	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011257	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

ggt:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to ggt Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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