gapA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

gapA

Gene Synonym(s)

ECK1777, b1779, JW1768, gad, gap1[1][2]

Product Desc.

glyceraldehyde 3-phosphate dehydrogenase-A[2][3];

Component of glyceraldehyde 3-phosphate dehydrogenase-A complex[2][3]

Glyceraldehyde 3-P dehydrogenase A; binds selenium[4]

Product Synonyms(s)

glyceraldehyde-3-phosphate dehydrogenase A[1], B1779[2][1], Gad[2][1], GapA[2][1], Gap1[2][1] , ECK1777, JW1768, b1779

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gapA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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A gapA mutant is not in the Keio collection; gapA mutants were not expected to grow on the medium used to attempt to isolate them; gapA is not an essential gene (Baba, 2006). Similar to eukaryotic GAPDH. Binds TrxA (Kumar, 2004).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

gapA

Mnemonic

Glyceraldehyde phosphate dehydrogenase

Synonyms

ECK1777, b1779, JW1768, gad, gap1[1][2]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

40.11 minutes 

MG1655: 1860795..1861790
<gbrowseImage> name=NC_000913:1860795..1861790 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1840000..1840995
<gbrowseImage> name=NC_012967:1840000..1840995 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1752854..1753849
<gbrowseImage> name=NC_012759:1752854..1753849 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1864485..1865480
<gbrowseImage> name=NC_007779:1864485..1865480 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1951366..1952361
<gbrowseImage> name=NC_010473:1951366..1952361 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1860798

Edman degradation

PMID:8740179
PMID:9298646
PMID:9740056
PMID:12084818


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

gapAY43I

Y43I

(in strain: ECOR 70)

Strain variation; seeded from UniProt:P0A9B2

gapAG266D

G266D

(in strain: E830587)

Strain variation; seeded from UniProt:P0A9B2

gapAE267A

E267A

(in strain: E2666-74)

Strain variation; seeded from UniProt:P0A9B2

gapAH177N

H177N

Reduces activity about 50-fold

seeded from UniProt:P0A9B2

gapA3

CGSC:6472

gapA2(Unst)

CGSC:6469

gapA7(ts)

temperature sensitive

CGSC:6474

gapA1(Unst)

CGSC:6676

gapA5(ts)

temperature sensitive

CGSC:15792

ΔgapA12::Cm

PMID:9260967

CGSC:60170

gapA10::Tn10

PMID:2248952

CGSC:63085


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1768

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCACTATCAAAGTAGGTATCAA

Primer 2:CCTTTGGAGATGTGAGCGATCAG

3E12

Kohara Phage

Genobase

PMID:3038334

9F2

Kohara Phage

Genobase

PMID:3038334

zdj-276::Tn10

Linked marker

CAG18464 = CGSC7387[5]

est. P1 cotransduction: 34% [6]
Synonyms:zdi-276::Tn10

zea-225::Tn10

Linked marker

CAG18465 = CGSC7388[5]

est. P1 cotransduction: 74% [6]
Synonyms:zdj-225::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10367

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10367

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000360

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947679

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0362

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005920

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GapA

Synonyms

glyceraldehyde-3-phosphate dehydrogenase A[1], B1779[2][1], Gad[2][1], GapA[2][1], Gap1[2][1] , ECK1777, JW1768, b1779

Product description

glyceraldehyde 3-phosphate dehydrogenase-A[2][3];

Component of glyceraldehyde 3-phosphate dehydrogenase-A complex[2][3]

Glyceraldehyde 3-P dehydrogenase A; binds selenium[4]

EC number (for enzymes)

1.2.1.12[1]

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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc (v14.0)

complete

GO:0004365

glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000173

F

Seeded from EcoCyc (v14.0)

complete

GO:0004365

glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.2.1.12

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006006

glucose metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000173

P

Seeded from EcoCyc (v14.0)

complete

GO:0006006

glucose metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006424

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0324

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

P

Seeded from EcoCyc (v14.0)

complete

GO:0008943

glyceraldehyde-3-phosphate dehydrogenase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006424

F

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0051287

NAD or NADH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000173

F

Seeded from EcoCyc (v14.0)

complete

GO:0051287

NAD or NADH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006424

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000173

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006424

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of glyceraldehyde 3-phosphate dehydrogenase-A complex

could be indirect

Protein

dnaK

PMID:15690043

Experiment(s):EBI-890143, EBI-888931

Protein

gatZ

PMID:15690043

Experiment(s):EBI-890143

Protein

rpoD

PMID:15690043

Experiment(s):EBI-888931

Protein

cpxR

PMID:15690043

Experiment(s):EBI-888931

Protein

rpoA

PMID:15690043

Experiment(s):EBI-888931

Protein

rpoB

PMID:15690043

Experiment(s):EBI-888931

Protein

rpoC

PMID:15690043

Experiment(s):EBI-888931

Protein

yfjJ

PMID:16606699

Experiment(s):EBI-1140784

Protein

rpoD

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpoC

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpoB

PMID:19402753

LCMS(ID Probability):99.6

Protein

cpxR

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpoA

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTIKVGINGF GRIGRIVFRA AQKRSDIEIV AINDLLDADY MAYMLKYDST HGRFDGTVEV
KDGHLIVNGK KIRVTAERDP ANLKWDEVGV DVVAEATGLF LTDETARKHI TAGAKKVVMT
GPSKDNTPMF VKGANFDKYA GQDIVSNASC TTNCLAPLAK VINDNFGIIE GLMTTVHATT
ATQKTVDGPS HKDWRGGRGA SQNIIPSSTG AAKAVGKVLP ELNGKLTGMA FRVPTPNVSV
VDLTVRLEKA ATYEQIKAAV KAAAEGEMKG VLGYTEDDVV STDFNGEVCT SVFDAKAGIA
LNDNFVKLVS WYDNETGYSN KVLDLIAHIS K
Length

331

Mol. Wt

35.532 kDa

pI

7.1 (calculated)

Extinction coefficient

28,420 - 28,795 (calc based on 8 Y, 3 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A9B2

Domain

3..150

PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

PMID:19920124

Domain

155..312

PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=gapA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129733

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947679

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005920

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9B2

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10367

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10367

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947679

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000360

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0362

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.70E+05

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

2380.382+/-13.684

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

2.107035176

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

220

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M67-2

PMID: 9298646

Protein

E. coli K-12 EMG2

1840

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M23

PMID: 9298646

Protein

E. coli K-12 EMG2

740

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M34

PMID: 9298646

Protein

E. coli K-12 EMG2

1660

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: Ml08

PMID: 9298646

Protein

E. coli K-12 MG1655

105852

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

59076

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

79411

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

gapA

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1860775..1860815 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1779 (EcoliWiki Page)

NCBI GEO profiles for gapA

microarray

GenExpDB:b1779 (EcoliWiki Page)

Summary of data for gapA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to gapA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10367

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0362

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1779

EcoGene

EcoGene:EG10367

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000360

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005920

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010360 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000026679 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G79530 (score: 1.000; bootstrap: 99%)
  • AT1G16300 (score: 0.685)
  • AT3G04120 (score: 0.120)
  • AT1G13440 (score: 0.112)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000019604 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000024692 (score: 0.384)
  • ENSBTAP00000001135 (score: 0.222)
  • ENSBTAP00000021166 (score: 0.111)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00000333 (score: 1.000; bootstrap: 100%)
  • WBGene00000332 (score: 1.000; bootstrap: 100%)
  • WBGene00024712 (score: 0.737)
  • WBGene00024150 (score: 0.729)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001685 (score: 1.000; bootstrap: 100%)
  • WBGene00001684 (score: 1.000; bootstrap: 100%)
  • WBGene00001683 (score: 0.717)
  • WBGene00001686 (score: 0.713)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000022036 (score: 1.000; bootstrap: 99%)
  • ENSCAFP00000022224 (score: 0.866)
  • ENSCAFP00000011169 (score: 0.788)
  • ENSCAFP00000010219 (score: 0.788)
  • ENSCAFP00000011479 (score: 0.675)
  • ENSCAFP00000021585 (score: 0.645)
  • ENSCAFP00000014198 (score: 0.628)
  • ENSCAFP00000002006 (score: 0.519)
  • ENSCAFP00000019717 (score: 0.494)
  • ENSCAFP00000000233 (score: 0.351)
  • ENSCAFP00000003371 (score: 0.333)
  • ENSCAFP00000010418 (score: 0.069)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005672 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030115-1 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3020 (score: 0.198)
  • ZDB-GENE-040426-2073 (score: 0.198)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185087 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001091 (score: 1.000; bootstrap: 83%)
  • FBgn0001092 (score: 0.940)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21397-PA (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023278 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000229239 (score: 1.000; bootstrap: 100%)
  • ENSP00000222286 (score: 0.095)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024582 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000008494 (score: 0.465)
  • ENSMMUP00000030989 (score: 0.217)
  • ENSMMUP00000024513 (score: 0.209)
  • ENSMMUP00000001132 (score: 0.087)
  • ENSMMUP00000011098 (score: 0.057)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022521 (score: 1.000; bootstrap: 98%)
  • ENSMODP00000005493 (score: 0.482)
  • ENSMODP00000016365 (score: 0.153)
  • ENSMODP00000023639 (score: 0.140)

From Inparanoid:20070104

Mus musculus

  • MGI:95640 (score: 1.000; bootstrap: 100%)
  • MGI:3643057 (score: 0.986)
  • MGI:3643906 (score: 0.958)
  • MGI:3648759 (score: 0.940)
  • MGI:3648656 (score: 0.833)
  • MGI:3646088 (score: 0.824)
  • MGI:3645079 (score: 0.806)
  • MGI:3646966 (score: 0.792)
  • MGI:3643695 (score: 0.778)
  • MGI:3646144 (score: 0.736)
  • MGI:3646519 (score: 0.639)
  • MGI:3643526 (score: 0.634)
  • MGI:3648580 (score: 0.444)
  • MGI:3647424 (score: 0.250)
  • MGI:3646884 (score: 0.250)
  • MGI:95653 (score: 0.116)

From Inparanoid:20070104

Oryza gramene

  • Q6H703 (score: 1.000; bootstrap: 98%)
  • Q655W2 (score: 0.679)
  • P26517 (score: 0.136)
  • P08735 (score: 0.116)
  • Q43247 (score: 0.116)
  • Q6ZK60 (score: 0.116)
  • Q09054 (score: 0.113)
  • Q43359 (score: 0.113)
  • Q42977 (score: 0.110)
  • Q7FAH2 (score: 0.107)
  • Q6K5G8 (score: 0.104)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000007822 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000018570 (score: 0.078)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000050213 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000046249 (score: 0.849)
  • ENSRNOP00000048213 (score: 0.787)
  • ENSRNOP00000042105 (score: 0.764)
  • ENSRNOP00000042538 (score: 0.760)
  • ENSRNOP00000042133 (score: 0.747)
  • ENSRNOP00000047965 (score: 0.689)
  • ENSRNOP00000050429 (score: 0.627)
  • ENSRNOP00000042220 (score: 0.622)
  • ENSRNOP00000043166 (score: 0.609)
  • ENSRNOP00000044183 (score: 0.587)
  • ENSRNOP00000046262 (score: 0.587)
  • ENSRNOP00000042918 (score: 0.573)
  • ENSRNOP00000032687 (score: 0.573)
  • ENSRNOP00000047405 (score: 0.551)
  • ENSRNOP00000044007 (score: 0.538)
  • ENSRNOP00000046460 (score: 0.538)
  • ENSRNOP00000041585 (score: 0.533)
  • ENSRNOP00000046358 (score: 0.529)
  • ENSRNOP00000047084 (score: 0.524)
  • ENSRNOP00000046665 (score: 0.498)
  • ENSRNOP00000044673 (score: 0.489)
  • ENSRNOP00000051384 (score: 0.489)
  • ENSRNOP00000041341 (score: 0.480)
  • ENSRNOP00000013168 (score: 0.476)
  • ENSRNOP00000040878 (score: 0.458)
  • ENSRNOP00000043492 (score: 0.458)
  • ENSRNOP00000045326 (score: 0.453)
  • ENSRNOP00000046649 (score: 0.449)
  • ENSRNOP00000046084 (score: 0.444)
  • ENSRNOP00000035413 (score: 0.436)
  • ENSRNOP00000045553 (score: 0.409)
  • ENSRNOP00000040323 (score: 0.404)
  • ENSRNOP00000039874 (score: 0.391)
  • ENSRNOP00000048963 (score: 0.391)
  • ENSRNOP00000046870 (score: 0.387)
  • ENSRNOP00000043651 (score: 0.378)
  • ENSRNOP00000046355 (score: 0.364)
  • ENSRNOP00000023344 (score: 0.347)
  • ENSRNOP00000046966 (score: 0.347)
  • ENSRNOP00000042291 (score: 0.333)
  • ENSRNOP00000047457 (score: 0.333)
  • ENSRNOP00000047476 (score: 0.324)
  • ENSRNOP00000043238 (score: 0.320)
  • ENSRNOP00000049771 (score: 0.316)
  • ENSRNOP00000048908 (score: 0.311)
  • ENSRNOP00000041575 (score: 0.307)
  • ENSRNOP00000043343 (score: 0.302)
  • ENSRNOP00000043391 (score: 0.293)
  • ENSRNOP00000044853 (score: 0.276)
  • ENSRNOP00000023363 (score: 0.271)
  • ENSRNOP00000050198 (score: 0.258)
  • ENSRNOP00000043122 (score: 0.258)
  • ENSRNOP00000039917 (score: 0.249)
  • ENSRNOP00000031622 (score: 0.231)
  • ENSRNOP00000033769 (score: 0.227)
  • ENSRNOP00000045570 (score: 0.227)
  • ENSRNOP00000042858 (score: 0.222)
  • ENSRNOP00000046816 (score: 0.200)
  • ENSRNOP00000050628 (score: 0.200)
  • ENSRNOP00000041672 (score: 0.187)
  • ENSRNOP00000008851 (score: 0.182)
  • ENSRNOP00000039618 (score: 0.147)
  • ENSRNOP00000044249 (score: 0.129)
  • ENSRNOP00000028518 (score: 0.102)
  • ENSRNOP00000039163 (score: 0.098)
  • ENSRNOP00000039156 (score: 0.089)
  • ENSRNOP00000048022 (score: 0.067)
  • ENSRNOP00000048234 (score: 0.067)
  • ENSRNOP00000048653 (score: 0.053)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YJL052W (score: 1.000; bootstrap: 100%)
  • YJR009C (score: 0.718)
  • YGR192C (score: 0.718)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC32F121 (score: 1.000; bootstrap: 100%)
  • SPBC3542 (score: 0.822)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156120 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000142721 (score: 0.177)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015338001 (score: 1.000; bootstrap: 100%)
  • GSTENP00035345001 (score: 0.252)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000025203 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

GAPA

From SHIGELLACYC

E. coli O157

GAPA

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Pfam (EcoliWiki Page)

PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR10836:SF4

Superfamily (EcoliWiki Page)

SUPERFAMILY:55347

EcoCyc

EcoCyc:EG10367

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10367

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000360

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0362

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005920

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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