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Expression|

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Standard Name	fliD
Gene Synonym(s)	ECK1923, b1924, JW1909, flbC, rfs, flaV^[1]^[2]
Product Desc.	flagellar cap protein FliD; filament capping protein; enables filament assembly^[2]^[3]; Component of Flagellum^[3] Hook-associated protein 2, axial family^[4]
Product Synonyms(s)	flagellar filament capping protein^[1], B1924^[2]^[1], Rfs^[2]^[1], FlbC^[2]^[1], FlaV^[2]^[1], FliD^[2]^[1] , ECK1923, flbC, JW1909, rfs, b1924
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): fliDST^[2]
Regulation/Activity
Quick Links
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</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

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Flagellar regulon.^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	fliD
Mnemonic	Flagella
Synonyms	ECK1923, b1924, JW1909, flbC, rfs, flaV^[1]^[2]
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	43.15 minutes	MG1655: 2001896..2003302 <gbrowseImage> name=NC_000913:2001896..2003302 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
BW2952		NC_012759: 1894379..1895785 <gbrowseImage> name=NC_012759:1894379..1895785 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 2006009..2007415 <gbrowseImage> name=NC_007779:2006009..2007415 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 2092904..2094310 <gbrowseImage> name=NC_010473:2092904..2094310 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability
ΔfliD (Keio:JW1909)	deletion	deletion	PMID:16738554	Shigen CGSC9587^[5]
ΔfliD770::kan			PMID:16738554	CGSC:100932
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW1909	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCGCAAGTATTTCATCGCTGGG Primer 2:CCtTTGGAATTACTGTTGTTTTC
4B9	Kohara Phage	Genobase	PMID:3038334
uvrC279::Tn10	Linked marker	CAG12156 = CGSC7394^[5]	est. P1 cotransduction: 67% ^[6]
zed-3069::Tn10	Linked marker	CAG18451 = CGSC7395^[5]	est. P1 cotransduction: 24% ^[6]
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10841	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10841	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000832	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:946428	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0834	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006407	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	FliD
Synonyms	flagellar filament capping protein^[1], B1924^[2]^[1], Rfs^[2]^[1], FlbC^[2]^[1], FlaV^[2]^[1], FliD^[2]^[1] , ECK1923, flbC, JW1909, rfs, b1924
Product description	flagellar cap protein FliD; filament capping protein; enables filament assembly^[2]^[3]; Component of Flagellum^[3] Hook-associated protein 2, axial family^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005576	extracellular region	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0964	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005576	extracellular region	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0243	C	Seeded from EcoCyc (v14.0)	complete
	GO:0007155	cell adhesion	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010809	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009288	bacterial-type flagellum	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003481	C	Seeded from EcoCyc (v14.0)	complete
	GO:0009288	bacterial-type flagellum	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010809	C	Seeded from EcoCyc (v14.0)	complete
	GO:0009288	bacterial-type flagellum	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0975	C	Seeded from EcoCyc (v14.0)	complete
	GO:0009288	bacterial-type flagellum	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0307	C	Seeded from EcoCyc (v14.0)	complete
	GO:0009296	flagellum assembly	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003481	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of Flagellum	could be indirect
Protein	prs		PMID:16606699	Experiment(s):EBI-1141366
Protein	yfhM		PMID:16606699	Experiment(s):EBI-1141366
Protein	lacZ		PMID:16606699	Experiment(s):EBI-1141366
Protein	fdnG		PMID:16606699	Experiment(s):EBI-1141366
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MASISSLGVG SGLDLSSILD SLTAAQKATL TPISNQQSSF TAKLSAYGTL KSALTTFQTA NTALSKADLF SATSTTSSTT AFSATTAGNA IAGKYTISVT HLAQAQTLTT RTTRDDTKTA IATSDSKLTI QQGGDKDPIT IDISAANSSL SGIRDAINNA KAGVSASIIN VGNGEYRLSV TSNDTGLDNA MTLSVSGDDA LQSFMGYDAS ASSNGMEVSV AAQNAQLTVN NVAIENSSNT ISDALENITL NLNDVTTGNQ TLTITQDTSK AQTAIKDWVN AYNSLIDTFS SLTKYTAVDA GADSQSSSNG ALLGDSTLRT IQTQLKSMLS NTVSSSSYKT LAQIGITTDP SDGKLELDAD KLTAALKKDA SGVGALIVGD GKKTGITTTI GSNLTSWLST TGIIKAATDG VSKTLNKLTK DYNAASDRID AQVARYKEQF TQLDVLMTSL NSTSSYLTQQ FENNSNSK
Length	468
Mol. Wt	48.458 kDa
pI	4.7 (calculated)
Extinction coefficient	25,900 (calc based on 10 Y, 2 W, and 0 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed (By similarity)	UniProt:P24216
Domain	10..107	PF02465 Flagellar hook-associated protein 2 C-terminus		PMID:19920124
Domain	222..452	PF07195 Flagellar hook-associated protein 2 C-terminus		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fliD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16129871	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946428	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006407	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P24216	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10841	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10841	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946428	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000832	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0834	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MG1655	3^a	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
Protein	E. coli K-12 MG1655	6	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	0^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
fliDST
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2001876..2001916 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b1924 (EcoliWiki Page)	NCBI GEO profiles for fliD
microarray	GenExpDB:b1924 (EcoliWiki Page)	Summary of data for fliD from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to fliD Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10841	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0834	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b1924
EcoGene	EcoGene:EG10841	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000832	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006407	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Caenorhabditis briggsae	WBGene00042870 (score: 1.000; bootstrap: 56%) WBGene00025033 (score: 0.277) WBGene00032431 (score: 0.112) WBGene00025032 (score: 0.109) WBGene00032428 (score: 0.067) WBGene00025035 (score: 0.056)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000022966 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000043279 (score: 1.000; bootstrap: 97%)	From Inparanoid:20070104
Shigella flexneri	FLID	From SHIGELLACYC
E. coli O157	FLID	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF02465 Flagellar hook-associated protein 2 C-terminus
Pfam (EcoliWiki Page)	PF07195 Flagellar hook-associated protein 2 C-terminus
EcoCyc	EcoCyc:EG10841	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10841	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000832	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0834	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006407	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 ^1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

fliD:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to fliD Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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