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Gene |

Product(s) |

Expression|

Evolution |

References |

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Standard Name	fabZ
Gene Synonym(s)	ECK0179, b0180, JW0175, sefA, yaeA, sabA, sfhC, sfhC21, sabA1, G465^[1]^[2]
Product Desc.	FabZ^[2]^[3]; Component of FABZ-CPLX^[2] 3R-hydroxymyristoyl acyl carrier protein (ACP) dehydratase^[4]
Product Synonyms(s)	(3R)-hydroxymyristol acyl carrier protein dehydratase^[1], B0180^[2]^[1], YaeA^[2]^[1], SefA^[2]^[1], FabZ^[2]^[1] , ECK0179, JW0175, sabA, sefA, sfhC, yaeA, b0180
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): yaeT-hlpA-lpxD-fabZ-lpxAB-rnhB-dnaE^[2], ecfK-skp-lpxD-fabZ-lpxAB-rnhB-dnaE, hlpA-lpxD-fabZ-lpxA^[2], fabZ^[2]
Regulation/Activity
Quick Links
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See Help:Quickview for help with entering information in the Quickview table.

Notes

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Binds TrxA (Kumar, 2004).^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	fabZ
Mnemonic	Fatty acid biosynthesis
Synonyms	ECK0179, b0180, JW0175, sefA, yaeA, sabA, sfhC, sfhC21, sabA1, G465^[1]^[2]
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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	4.36 minutes	MG1655: 202101..202556 <gbrowseImage> name=NC_000913:202101..202556 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 204943..205398 <gbrowseImage> name=NC_012967:204943..205398 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 202100..202555 <gbrowseImage> name=NC_012759:202100..202555 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 202101..202556 <gbrowseImage> name=NC_007779:202101..202556 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 176205..176660 <gbrowseImage> name=NC_010473:176205..176660 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
Coding Start (SO:0000323)	MG1655	202101	Edman degradation	PMID:8354462
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
sfhC21					PMID:10048027		Suppressor of ftsH lethality
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW0175	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCACTACTAACACTCATACTCT Primer 2:CCGGCCTCCCGGCTACGAGCACA
E2B8	Kohara Phage	Genobase	PMID:3038334
zad-220::Tn10	Linked marker	CAG12025 = CGSC7326^[5]	est. P1 cotransduction: 8% ^[6]
yafC502::Tn10	Linked marker	CAG18436 = CGSC7328^[5]	est. P1 cotransduction: 31% ^[6] Synonyms:zae-502::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11284	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11284	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001257	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:944888	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1261	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0000613	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	FabZ
Synonyms	(3R)-hydroxymyristol acyl carrier protein dehydratase^[1], B0180^[2]^[1], YaeA^[2]^[1], SefA^[2]^[1], FabZ^[2]^[1] , ECK0179, JW0175, sabA, sefA, sfhC, yaeA, b0180
Product description	FabZ^[2]^[3]; Component of FABZ-CPLX^[2] 3R-hydroxymyristoyl acyl carrier protein (ACP) dehydratase^[4]
EC number (for enzymes)	4.2.1.-^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005737	cytoplasm	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00406	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010084	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0963	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0086	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006633	fatty acid biosynthetic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010084	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008610	lipid biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0444	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009245	lipid A biosynthetic process	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00406	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009245	lipid A biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0441	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016829	lyase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0456	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016836	hydro-lyase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00406	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016836	hydro-lyase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010084	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of FABZ-CPLX	could be indirect
Protein	clpA		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	ffh		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	glnS		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	lon		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplA		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplB		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplC		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplD		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplE		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplF		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplI		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplJ		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplM		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplS		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rplV		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rpsA		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rpsB		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rpsC		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rpsD		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rpsE		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	rpsG		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	tufA		PMID:15690043^[7]	Experiment(s):EBI-887148
Protein	gfcD		PMID:16606699^[8]	Experiment(s):EBI-1135815
Protein	yjdA		PMID:16606699^[8]	Experiment(s):EBI-1135815
Protein	rpsS		PMID:19402753^[9]	LCMS(ID Probability):99.5
Protein	rpmB		PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rplE		PMID:19402753^[9]	MALDI(Z-score):24.447798
Protein	rplB		PMID:19402753^[9]	MALDI(Z-score):37.538291
Protein	rpsC		PMID:19402753^[9]	MALDI(Z-score):21.542976
Protein	rpsA		PMID:19402753^[9]	MALDI(Z-score):26.526817
Protein	rplA		PMID:19402753^[9]	MALDI(Z-score):36.908339
Protein	rpsD		PMID:19402753^[9]	MALDI(Z-score):34.031891
Protein	ffh		PMID:19402753^[9]	MALDI(Z-score):17.979572
Protein	clpA		PMID:19402753^[9]	MALDI(Z-score):22.261569
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
Cytoplasm		PMID:8354462, PMID:7806516, PMID:8805534, PMID:8910376	EchoLocation:fabZ
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MTTNTHTLQI EEILELLPHR FPFLLVDRVL DFEEGRFLRA VKNVSVNEPF FQGHFPGKPI FPGVLILEAM AQATGILAFK SVGKLEPGEL YYFAGIDEAR FKRPVVPGDQ MIMEVTFEKT RRGLTRFKGV ALVDGKVVCE ATMMCARSRE A
Length	151
Mol. Wt	17.032 kDa
pI	7.2 (calculated)
Extinction coefficient	2,980 - 3,230 (calc based on 2 Y, 0 W, and 2 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	17..142	PF07977 FabA-like domain		PMID:19920124^[10]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fabZ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128173	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:944888	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0000613	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A6Q6	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11284	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11284	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:944888	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001257	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1261	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MC4100	3.33E+03	molecules/cell	Medium: median data from rich and minimal media Temperature (°C): 37 Doubling time (min): Growth Rate(min): Growth phase: other:	emPAI		PMID:18304323
Protein	Ecoli K-12	169.29+/-1.224	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.59154+/-0.07843	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by FISH	PMID:20671182
mRNA	Ecoli K-12	0.413186813	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	19275	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	3099	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	12823	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
yaeT-hlpA-lpxD-fabZ-lpxAB-rnhB-dnaE
hlpA-lpxD-fabZ-lpxA
fabZ
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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<gbrowseImage> name=NC_000913:202081..202121 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b0180 (EcoliWiki Page)	NCBI GEO profiles for fabZ
microarray	GenExpDB:b0180 (EcoliWiki Page)	Summary of data for fabZ from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
	GFP Fusion	Intergenic region (201915..202180) fused to gfpmut2.	OpenBioSystems	GFP fusion described in Zaslaver, et al. Plate:109-AZ05; Well:H2^[11]
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Notes

Accessions Related to fabZ Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11284	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1261	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b0180
EcoGene	EcoGene:EG11284	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001257	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0000613	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000001958 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000031280 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Arabidopsis thaliana	AT2G22230 (score: 1.000; bootstrap: 100%) AT5G10160 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Oryza gramene	Q6I5L0 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000022453 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Shigella flexneri	FABZ	From SHIGELLACYC
E. coli O157	FABZ	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Superfamily (EcoliWiki Page)	SUPERFAMILY:54637
Pfam (EcoliWiki Page)	PF07977 FabA-like domain
EcoCyc	EcoCyc:EG11284	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11284	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001257	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1261	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0000613	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 ^2.15 ^2.16 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ ^7.00 ^7.01 ^7.02 ^7.03 ^7.04 ^7.05 ^7.06 ^7.07 ^7.08 ^7.09 ^7.10 ^7.11 ^7.12 ^7.13 ^7.14 ^7.15 ^7.16 ^7.17 ^7.18 ^7.19 ^7.20 ^7.21 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
↑ ^8.0 ^8.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ ^9.00 ^9.01 ^9.02 ^9.03 ^9.04 ^9.05 ^9.06 ^9.07 ^9.08 ^9.09 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

fabZ:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to fabZ Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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