cysI:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

cysI

Gene Synonym(s)

ECK2758, b2763, JW2733[1], JW2733

Product Desc.

sulfite reductase hemoprotein subunit[2][3];

Component of SULFITE-REDUCT-CPLX[2]

Sulfite reductase [NADPH] hemoprotein beta-component; has 4Fe-4S iron-sulfur center[4]

Product Synonyms(s)

sulfite reductase, beta subunit, NAD(P)-binding, heme-binding[1], B2763[2][1], CysI[2][1] , ECK2758, JW2733, b2763

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): cysJIH[2], OP00106, cysJHI

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

cysI

Mnemonic

Cysteine

Synonyms

ECK2758, b2763, JW2733[1], JW2733

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

62.21 minutes 

MG1655: 2888121..2886409
<gbrowseImage> name=NC_000913:2886409..2888121 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2778599..2776887
<gbrowseImage> name=NC_012967:2776887..2778599 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2772221..2773933
<gbrowseImage> name=NC_012759:2772221..2773933 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2888755..2887043
<gbrowseImage> name=NC_007779:2887043..2888755 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2886412

Edman degradation

PMID:2670946
PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔcysI (Keio:JW2733)

deletion

deletion

Auxotrophies

Requires cysteine for growth

PMID:16738554

Shigen

CGSC10149[5]

cysI::Tn5KAN-I-SceI (FB20925)

Insertion at nt 625 in Plus orientation

Auxotrophies

Requires cysteine for growth

PMID:15262929

E. coli Genome Project:FB20925

contains pKD46

cysI95::Tn10

Insertion at 2,886,784 bp in MG1655 (NC_000913)

Auxotrophies

Requires cysteine for growth

adapted from Nichols et al.[6]

CAG12173 = CGSC7425[5]

Synonyms: cysC95::Tn10

cysI53(Am)

Auxotrophies

Requires cysteine for growth

CGSC:8520

amber (UAG) mutation

cysI95::Tn10

Auxotrophies

Requires cysteine for growth

PMID:9829956

CGSC:8856

cysI3152::Tn10kan

Auxotrophies

Requires cysteine for growth

PMID:2540407 PMID:9829956

CGSC:40100

ΔcysI765::kan

deletion

deletion

Auxotrophies

Requires cysteine for growth

PMID:16738554

CGSC:100494


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2733

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGCGAAAAACATCCAGGGCC

Primer 2:CCATCCCACAAATCACGCGCCGG

9A10

Kohara Phage

Genobase

PMID:3038334

1B3

Kohara Phage

Genobase

PMID:3038334

srlD3131::Tn10

Linked marker

CAG18642 = CGSC7423[5]

est. P1 cotransduction: 4% [6]
Synonyms:zfh-3131::Tn10, zfi-3131::Tn10

fucP3072::Tn10

Linked marker

CAG12079 = CGSC7427[5]

est. P1 cotransduction: 13% [6]
Synonyms:fuc-3072::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10190

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10190

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000185

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947231

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0187

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009061

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CysI

Synonyms

sulfite reductase, beta subunit, NAD(P)-binding, heme-binding[1], B2763[2][1], CysI[2][1] , ECK2758, JW2733, b2763

Product description

sulfite reductase hemoprotein subunit[2][3];

Component of SULFITE-REDUCT-CPLX[2]

Sulfite reductase [NADPH] hemoprotein beta-component; has 4Fe-4S iron-sulfur center[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0000103

sulfate assimilation

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01540

P

Seeded from EcoCyc (v14.0)

complete

GO:0004783

sulfite reductase (NADPH) activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01540

F

Seeded from EcoCyc (v14.0)

complete

GO:0004783

sulfite reductase (NADPH) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011786

F

Seeded from EcoCyc (v14.0)

complete

GO:0004783

sulfite reductase (NADPH) activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.8.1.2

F

Seeded from EcoCyc (v14.0)

complete

GO:0005506

iron ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0408

F

Seeded from EcoCyc (v14.0)

complete

GO:0008652

cellular amino acid biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011786

P

Seeded from EcoCyc (v14.0)

complete

GO:0008652

cellular amino acid biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0028

P

Seeded from EcoCyc (v14.0)

complete

GO:0009337

sulfite reductase complex (NADPH)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011786

C

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005117

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006066

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006067

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0019344

cysteine biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0198

P

Seeded from EcoCyc (v14.0)

complete

GO:0020037

heme binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006066

F

Seeded from EcoCyc (v14.0)

complete

GO:0020037

heme binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006067

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0050661

NADP or NADPH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011786

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006066

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006067

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0411

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011786

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0004

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005117

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006066

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006067

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011786

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

GO:0070814

hydrogen sulfide biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01540

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of SULFITE-REDUCT-CPLX

could be indirect

Protein

sdhA

PMID:16606699

Experiment(s):EBI-1143877

Protein

proS

PMID:16606699

Experiment(s):EBI-1143877

Protein

recJ

PMID:16606699

Experiment(s):EBI-1143877

Protein

ycbX

PMID:19402753

MALDI(Z-score):38.797099

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSEKHPGPLV VEGKLTDAER MKHESNYLRG TIAEDLNDGL TGGFKGDNFL LIRFHGMYQQ
DDRDIRAERA EQKLEPRHAM LLRCRLPGGV ITTKQWQAID KFAGENTIYG SIRLTNRQTF
QFHGILKKNV KPVHQMLHSV GLDALATAND MNRNVLCTSN PYESQLHAEA YEWAKKISEH
LLPRTRAYAE IWLDQEKVAT TDEEPILGQT YLPRKFKTTV VIPPQNDIDL HANDMNFVAI
AENGKLVGFN LLVGGGLSIE HGNKKTYART ASEFGYLPLE HTLAVAEAVV TTQRDWGNRT
DRKNAKTKYT LERVGVETFK AEVERRAGIK FEPIRPYEFT GRGDRIGWVK GIDDNWHLTL
FIENGRILDY PARPLKTGLL EIAKIHKGDF RITANQNLII AGVPESEKAK IEKIAKESGL
MNAVTPQREN SMACVSFPTC PLAMAEAERF LPSFIDNIDN LMAKHGVSDE HIVMRVTGCP
NGCGRAMLAE VGLVGKAPGR YNLHLGGNRI GTRIPRMYKE NITEPEILAS LDELIGRWAK
EREAGEGFGD FTVRAGIIRP VLDPARDLWD
Length

570

Mol. Wt

63.999 kDa

pI

7.7 (calculated)

Extinction coefficient

64,860 - 65,610 (calc based on 14 Y, 8 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P17846

Domain

172..331

PF01077 Nitrite and sulphite reductase 4Fe-4S domain

PMID:19920124

Domain

73..140

PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain

PMID:19920124

Domain

350..418

PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=cysI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130670

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947231

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009061

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P17846

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10190

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10190

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947231

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000185

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0187

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

43

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2569

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

11068

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

cysJIH

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2888101..2888141 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2763 (EcoliWiki Page)

NCBI GEO profiles for cysI

microarray

GenExpDB:b2763 (EcoliWiki Page)

Summary of data for cysI from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to cysI Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10190

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0187

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2763

EcoGene

EcoGene:EG10190

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000185

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009061

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G04590 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q60EA3 (score: 1.000; bootstrap: 99%)
  • O23813 (score: 0.890)
  • Q60EI0 (score: 0.869)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YJR137C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC10F61c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000009488 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

CYSI

From SHIGELLACYC

E. coli O157

CYSI

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain

Pfam (EcoliWiki Page)

PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain

Pfam (EcoliWiki Page)

PF01077 Nitrite and sulphite reductase 4Fe-4S domain

Panther (EcoliWiki Page)

PTHR11493:SF2

Superfamily (EcoliWiki Page)

SUPERFAMILY:55124

Superfamily (EcoliWiki Page)

SUPERFAMILY:55124

Superfamily (EcoliWiki Page)

SUPERFAMILY:56014

Superfamily (EcoliWiki Page)

SUPERFAMILY:56014

EcoCyc

EcoCyc:EG10190

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10190

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000185

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0187

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009061

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 6.2 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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