accC:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

accC

Gene Synonym(s)

ECK3243, b3256, JW3224[1], fabG, JW3224

Product Desc.

AccC[2][3];

Component of biotin carboxylase[2][3]; acetyl CoA carboxylase[2][3]

Acetyl-CoA carboxylase, biotin carboxylase (BC) subunit[4]

Product Synonyms(s)

acetyl-CoA carboxylase, biotin carboxylase subunit[1], B3256[2][1], AccC[2][1] , ECK3243, fabG, JW3224, b3256

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): accBC[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Mutations result in negative cooperativity with respect to the substrate bicarbonate. Mutations in Arg 338 reveal arginine plays a role in carboxyl transfer to biotin.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

accC

Mnemonic

Acetyl-CoA carboxylase

Synonyms

ECK3243, b3256, JW3224[1], fabG, JW3224

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

BW2952

NC_012759: 3291087..3292436
<gbrowseImage> name=NC_012759:3291087..3292436 source=BW2952 preset=GeneLocation </gbrowseImage>

MG1655

73.37 minutes 

MG1655: 3403939..3405288
<gbrowseImage> name=NC_000913:3403939..3405288 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3333808..3335157
<gbrowseImage> name=NC_012967:3333808..3335157 source=REL606 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3405772..3407121
<gbrowseImage> name=NC_007779:3405772..3407121 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3501684..3503033
<gbrowseImage> name=NC_010473:3501684..3503033 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3403939

Edman degradation

PMID:1370469
PMID:1682920
PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

accCE23R

E23R

Loss of homodimerization. No effect on ATP binding

seeded from UniProt:P24182

accCF363A

F363A

Loss of homodimerization. No effect on ATP binding

seeded from UniProt:P24182

accCR366E

R366E

Loss of homodimerization. No effect on ATP binding

seeded from UniProt:P24182

accCR19E

R19E

Loss of homodimerization. No effect on ATP binding

seeded from UniProt:P24182

accC ++

Overexpression

Increase Acetyle COA Carboxylase activity upon over expression.

PMID:10893421

See Table 1.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3224

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCTGGATAAAATTGTTATTGC

Primer 2:CCTTTTTCCTGAAGACCGAGTTT

21D3

Kohara Phage

Genobase

PMID:3038334

6G3

Kohara Phage

Genobase

PMID:3038334

zhc-6::Tn10

Linked marker

CAG12153 = CGSC7442[5]

est. P1 cotransduction: 18% [6]
Synonyms:zha-6::Tn10

acrF3083::Tn10

Linked marker

CAG12075 = CGSC7447[5]

est. P1 cotransduction: 69% [6]
Synonyms:zhd-3083::Tn10, zhe-3083::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10276

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10276

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000270

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947761

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0272

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010677

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AccC

Synonyms

acetyl-CoA carboxylase, biotin carboxylase subunit[1], B3256[2][1], AccC[2][1] , ECK3243, fabG, JW3224, b3256

Product description

AccC[2][3];

Component of biotin carboxylase[2][3]; acetyl CoA carboxylase[2][3]

Acetyl-CoA carboxylase, biotin carboxylase (BC) subunit[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005479

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005481

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011761

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013816

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013817

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016185

F

Seeded from EcoCyc (v14.0)

complete

GO:0003989

acetyl-CoA carboxylase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:6.4.1.2

F

Seeded from EcoCyc (v14.0)

complete

GO:0004075

biotin carboxylase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:6.3.4.14

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005479

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011761

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011764

F

Seeded from EcoCyc (v14.0)

complete

GO:0045717

negative regulation of fatty acid biosynthetic process

PMID:17056747

IMP: Inferred from Mutant Phenotype

P

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013816

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013817

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016185

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0006633

fatty acid biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0275

P

Seeded from EcoCyc (v14.0)

complete

GO:0006633

fatty acid biosynthetic process

PMID:10893421

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0009374

biotin binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011764

F

Seeded from EcoCyc (v14.0)

complete

GO:0016874

ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004549

F

Seeded from EcoCyc (v14.0)

complete

GO:0016874

ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005482

F

Seeded from EcoCyc (v14.0)

complete

GO:0016874

ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011764

F

Seeded from EcoCyc (v14.0)

complete

GO:0016874

ligase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0436

F

Seeded from EcoCyc (v14.0)

complete

GO:0004075

biotin carboxylase activity

PMID:10893421

IDA: Inferred from Direct Assay

F

complete

GO:0006633

fatty acid biosynthetic process

PMID:10893421

IGI: Inferred from Genetic Interaction

EcoliWiki:accA EcoliWiki:accB EcoliWiki:accD


P

complete

GO:0005737

cytoplasm

PMID:10893421

IC: Inferred by Curator

GO:0004075


C

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of biotin carboxylase

could be indirect

Protein

accB

PMID:15690043

Experiment(s):EBI-882643, EBI-890206

Protein

dnaK

PMID:15690043

Experiment(s):EBI-882643

Protein

dnaN

PMID:15690043

Experiment(s):EBI-882643

Protein

rplC

PMID:15690043

Experiment(s):EBI-882643

Protein

nadE

PMID:16606699

Experiment(s):EBI-1145313

Protein

yiiQ

PMID:16606699

Experiment(s):EBI-1145313

Protein

greA

PMID:16606699

Experiment(s):EBI-1145313

Protein

yraN

PMID:16606699

Experiment(s):EBI-1145313

Protein

yiiS

PMID:16606699

Experiment(s):EBI-1145313

Protein

accA

PMID:15690043

Experiment(s):EBI-890206

Protein

accD

PMID:15690043

Experiment(s):EBI-890206

Protein

cysM

PMID:15690043

Experiment(s):EBI-890206

Protein

yhdY

PMID:15690043

Experiment(s):EBI-890206

Protein

accA

PMID:19402753

LCMS(ID Probability):99.0

Protein

cysM

PMID:19402753

LCMS(ID Probability):99.6

Protein

accD

PMID:19402753

LCMS(ID Probability):99.0

Protein

accB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

yhdY

PMID:19402753

LCMS(ID Probability):99.0

Protein

Subunits of acetyl CoA carboxylase

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLDKIVIANR GEIALRILRA CKELGIKTVA VHSSADRDLK HVLLADETVC IGPAPSVKSY
LNIPAIISAA EITGAVAIHP GYGFLSENAN FAEQVERSGF IFIGPKAETI RLMGDKVSAI
AAMKKAGVPC VPGSDGPLGD DMDKNRAIAK RIGYPVIIKA SGGGGGRGMR VVRGDAELAQ
SISMTRAEAK AAFSNDMVYM EKYLENPRHV EIQVLADGQG NAIYLAERDC SMQRRHQKVV
EEAPAPGITP ELRRYIGERC AKACVDIGYR GAGTFEFLFE NGEFYFIEMN TRIQVEHPVT
EMITGVDLIK EQLRIAAGQP LSIKQEEVHV RGHAVECRIN AEDPNTFLPS PGKITRFHAP
GGFGVRWESH IYAGYTVPPY YDSMIGKLIC YGENRDVAIA RMKNALQELI IDGIKTNVDL
QIRIMNDENF QHGGTNIHYL EKKLGLQEK
Length

449

Mol. Wt

49.321 kDa

pI

7.1 (calculated)

Extinction coefficient

27,850 - 28,850 (calc based on 15 Y, 1 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

336..441

PF02785 Biotin carboxylase C-terminal domain

PMID:19920124

Domain

1..110

PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain

PMID:19920124

Domain

115..324

PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=accC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131144

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947761

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010677

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P24182

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10276

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10276

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947761

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000270

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0272

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.37E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 EMG2

180

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M68-2

PMID: 9298646

Protein

E. coli K-12 MG1655

13890

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1951

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

4452

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

accBC

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3403919..3403959 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3256 (EcoliWiki Page)

NCBI GEO profiles for accC

microarray

GenExpDB:b3256 (EcoliWiki Page)

Summary of data for accC from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to accC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10276

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0272

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3256

EcoGene

EcoGene:EG10276

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000270

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010677

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000023222 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000032346 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G35360 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008604 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036608 (score: 1.000; bootstrap: 100%)
  • WBGene00026327 (score: 0.076)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017864 (score: 1.000; bootstrap: 93%)
  • WBGene00009319 (score: 0.065)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000017309 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016531 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-246 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-274 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230063 (score: 1.000; bootstrap: 99%)
  • DDB0230065 (score: 0.060)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027580 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13539-PA (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000032512 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000308554 (score: 1.000; bootstrap: 99%)
  • ENSP00000265594 (score: 0.054)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013840 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000005991 (score: 0.076)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009482 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Mus musculus

  • MGI:1919289 (score: 1.000; bootstrap: 99%)
  • MGI:97499 (score: 0.052)

From Inparanoid:20070104

Oryza gramene

  • Q41511 (score: 1.000; bootstrap: 100%)
  • Q41525 (score: 1.000; bootstrap: 100%)
  • Q8S6N5 (score: 0.884)
  • Q7XYR4 (score: 0.692)
  • Q7XYR3 (score: 0.691)
  • Q84TQ5 (score: 0.690)
  • Q947M6 (score: 0.689)
  • Q41743 (score: 0.689)
  • Q84TQ6 (score: 0.686)
  • O48959 (score: 0.685)
  • Q8LRK2 (score: 0.676)
  • Q43248 (score: 0.477)
  • Q08367 (score: 0.463)
  • Q94FR6 (score: 0.284)
  • Q94FR7 (score: 0.283)
  • Q94FR5 (score: 0.279)
  • Q94FR8 (score: 0.275)
  • Q94FS0 (score: 0.273)
  • Q94FR9 (score: 0.272)
  • Q94FS1 (score: 0.271)
  • Q9ZPN1 (score: 0.263)
  • Q5CCG4 (score: 0.241)
  • Q66RP8 (score: 0.235)
  • Q9LL90 (score: 0.178)
  • Q9LDT4 (score: 0.178)
  • Q9LL89 (score: 0.177)
  • Q84U78 (score: 0.177)
  • Q84U79 (score: 0.177)
  • Q40010 (score: 0.174)
  • Q7G1H3 (score: 0.145)
  • O48960 (score: 0.145)
  • Q7XYR1 (score: 0.141)
  • Q7XYR2 (score: 0.140)
  • Q506J0 (score: 0.130)
  • Q506J8 (score: 0.130)
  • Q506J3 (score: 0.130)
  • Q506J5 (score: 0.130)
  • Q506J4 (score: 0.130)
  • Q506J1 (score: 0.129)
  • Q08737 (score: 0.128)
  • Q506J2 (score: 0.128)
  • Q7XHK2 (score: 0.062)
  • Q8VWG1 (score: 0.060)
  • Q947K2 (score: 0.056)
  • Q947K1 (score: 0.056)
  • Q947K0 (score: 0.056)
  • Q947J9 (score: 0.056)
  • Q947J8 (score: 0.056)
  • Q93WH4 (score: 0.056)
  • Q93WH3 (score: 0.056)
  • Q93WH2 (score: 0.056)
  • Q93WH1 (score: 0.056)
  • Q947J6 (score: 0.056)
  • Q947J5 (score: 0.055)
  • Q947J4 (score: 0.055)
  • Q947J7 (score: 0.055)
  • Q850M1 (score: 0.054)
  • Q84K29 (score: 0.054)
  • Q947I9 (score: 0.054)
  • Q947J0 (score: 0.053)
  • Q947I8 (score: 0.053)
  • Q947J3 (score: 0.053)
  • Q947J2 (score: 0.052)
  • Q947J1 (score: 0.052)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000026948 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018942 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGL062W (score: 1.000; bootstrap: 80%)
  • YBR218C (score: 0.933)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC17G91c (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000173073 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000144429 (score: 0.059)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00013003001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000031615 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Shigella flexneri

ACCC

From SHIGELLACYC

E. coli O157

ACCC

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain

Pfam (EcoliWiki Page)

PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain

Pfam (EcoliWiki Page)

PF02785 Biotin carboxylase C-terminal domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51246

Superfamily (EcoliWiki Page)

SUPERFAMILY:52440

Panther (EcoliWiki Page)

PTHR18866:SF51

Superfamily (EcoliWiki Page)

SUPERFAMILY:56059

EcoCyc

EcoCyc:EG10276

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10276

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000270

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0272

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010677

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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