rpsL:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
rpsL |
|---|---|
| Mnemonic |
Ribosomal protein, small |
| Synonyms |
ECK3329, b3342, JW3304, asuB, strA[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
74.84 minutes |
MG1655: 3472574..3472200 |
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NC_012967: 3402457..3402083 |
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NC_012759: 3359357..3359731 |
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W3110 |
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W3110: 4165864..4166238 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
3472203 |
Edman degradation |
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| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
Strain DH10B |
K43R |
Nonsynonomous mutation |
This is a SNP in E. coli K-12 Strain DH10B | ||||
|
rpsLK43R |
K43R |
(confers streptomycin resistance but not hyperaccurate translation) |
Strain variation; seeded from UniProt:P0A7S3 | ||||
|
rpsLL57H |
L57H |
Protein is not incorporated into ribosomes |
seeded from UniProt:P0A7S3 | ||||
|
rpsLK88Q |
K88Q |
Confers low-level resistance to streptomycin and a 15% decrease in the translational elongation rate |
seeded from UniProt:P0A7S3 | ||||
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rpsL136(strR) |
streptomycin resistant |
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rpsL31(strR) |
streptomycin resistant |
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rpsL8 |
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rpsL118(strR) |
streptomycin resistant |
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rpsL200(strR) |
streptomycin resistant |
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rpsL104 |
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rpsL109(strR) |
streptomycin resistant |
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rpsL151(strR) |
streptomycin resistant |
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rpsL195(strR) |
streptomycin resistant |
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rpsL134(strR) |
streptomycin resistant |
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rpsL175(strR) |
streptomycin resistant |
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rpsL153(strR) |
streptomycin resistant |
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rpsL67(strR) |
streptomycin resistant |
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rpsL135(strR) |
streptomycin resistant |
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rpsL125(strR) |
streptomycin resistant |
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rpsL155(strR) |
streptomycin resistant |
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rpsL150(strR) |
streptomycin resistant |
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rpsL100(strR) |
streptomycin resistant |
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rpsL181(strR) |
streptomycin resistant |
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rpsL178(strR) |
streptomycin resistant |
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rpsL172(strR) |
streptomycin resistant |
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rpsL173(strR) |
streptomycin resistant |
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rpsL223(strR) |
streptomycin resistant |
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rpsL129(strR) |
streptomycin resistant |
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rpsL99(strR) |
streptomycin resistant |
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rpsL14 |
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rpsL700(strR) |
streptomycin resistant |
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rpsL97(strR) |
streptomycin resistant |
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rpsL78(strR) |
streptomycin resistant |
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rpsL39(StrD) |
streptomycin dependent |
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rpsL101(strR) |
streptomycin resistant |
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rpsL45(strR) |
streptomycin resistant |
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rpsL265(strR) |
streptomycin resistant |
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rpsL704(strR) |
streptomycin resistant |
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rpsL186(strR) |
streptomycin resistant |
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rpsL17 |
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rpsL198(strR) |
streptomycin resistant |
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rpsL197(strR) |
streptomycin resistant |
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rpsL179(strR) |
streptomycin resistant |
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rpsL117(strR) |
streptomycin resistant |
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rpsL126(strR) |
streptomycin resistant |
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rpsL25(strR) |
streptomycin resistant |
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rpsL196(strR) |
streptomycin resistant |
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rpsL213(strR) |
streptomycin resistant |
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rpsL212(strR) |
streptomycin resistant |
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rpsL124(strR) |
streptomycin resistant |
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rpsL214(strR) |
streptomycin resistant |
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rpsL228(strR) |
streptomycin resistant |
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rpsL231(strR) |
streptomycin resistant |
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rpsL999(strR) |
streptomycin resistant |
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rpsL254(strR) |
streptomycin resistant |
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rpsL255 |
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rpsL261(strR) |
streptomycin resistant |
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rpsL35(strR) |
streptomycin resistant |
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rpsL146(strR) |
streptomycin resistant |
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rpsL110(strR) |
streptomycin resistant |
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rpsL145(strR) |
streptomycin resistant |
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rpsL257(strR) |
streptomycin resistant |
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rpsL284(strR) |
streptomycin resistant |
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rpsL283(strR) |
streptomycin resistant |
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rpsL180(strR) |
streptomycin resistant |
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rpsL182(strR) |
streptomycin resistant |
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rpsL204(strR) |
streptomycin resistant |
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[rpsL203](strR) |
streptomycin resistant |
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rpsL160(strR) |
streptomycin resistant |
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rpsL140(strR) |
streptomycin resistant |
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rpsL149(strR) |
streptomycin resistant |
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rpsL157(strR) |
streptomycin resistant |
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rpsL115(strR) |
streptomycin resistant |
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rpsL20(strR) |
streptomycin resistant |
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rpsL62(strR) |
streptomycin resistant |
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rpsL201(strR) |
streptomycin resistant |
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rpsL192(strR) |
streptomycin resistant |
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rpsL190(strR) |
streptomycin resistant |
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rpsL194(strR) |
streptomycin resistant |
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rpsL193(strR) |
streptomycin resistant |
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rpsL56(strR) |
streptomycin resistant |
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rpsL171(strR) |
streptomycin resistant |
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rpsL230(strR) |
streptomycin resistant |
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rpsL273(strR) |
streptomycin resistant |
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rpsL132(strR) |
streptomycin resistant |
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rpsL174(strR) |
streptomycin resistant |
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rpsL159(strR) |
streptomycin resistant |
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rpsL27(strR) |
streptomycin resistant |
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rpsL138(strR) |
streptomycin resistant |
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rpsL69(strR) |
streptomycin resistant |
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rpsL71(strR) |
streptomycin resistant |
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rpsL24(strR) |
streptomycin resistant |
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rpsL281(strR) |
streptomycin resistant |
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rpsL263(strR) |
streptomycin resistant |
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rpsL185(strR) |
streptomycin resistant |
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rpsL260(strR) |
streptomycin resistant |
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rpsL154(strR) |
streptomycin resistant |
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rpsL120(strR) |
streptomycin resistant |
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rpsL264(strR) |
streptomycin resistant |
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rpsL268(strR) |
streptomycin resistant |
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rpsL127(strR) |
streptomycin resistant |
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rpsL16(strR) |
streptomycin resistant |
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rpsL712(strR) |
streptomycin resistant |
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rpsL60(strR) |
streptomycin resistant |
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rpsL106(strR) |
streptomycin resistant |
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rpsL123(strR) |
streptomycin resistant |
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rpsL144(strR) |
streptomycin resistant |
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rpsL183(strR) |
streptomycin resistant |
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rpsL133(strR) |
streptomycin resistant |
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rpsL229(strR) |
streptomycin resistant |
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rpsL227(strR) |
streptomycin resistant |
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rpsL218(strR) |
streptomycin resistant |
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rpsL217(strR) |
streptomycin resistant |
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rpsL253(strR) |
streptomycin resistant |
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rpsL272(strR) |
streptomycin resistant |
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rpsL275(strR) |
streptomycin resistant |
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rpsL252(strR) |
streptomycin resistant |
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rpsL18(strR) |
streptomycin resistant |
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rpsL38(strR) |
streptomycin resistant |
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rpsL23(strR) |
streptomycin resistant |
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rpsL112(strR) |
streptomycin resistant |
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rpsL40 |
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rpsL30(strR) |
streptomycin resistant |
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rpsL33(strR) |
streptomycin resistant |
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rpsL114(strR) |
streptomycin resistant |
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rpsL12(strR) |
streptomycin resistant |
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rpsL143(strR) |
streptomycin resistant |
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rpsL102(strR) |
streptomycin resistant |
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rpsL119(strR) |
streptomycin resistant |
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rpsL137(strR) |
streptomycin resistant |
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rpsL139(strR) |
streptomycin resistant |
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rpsL256(strR) |
streptomycin resistant |
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rpsL184(strR) |
streptomycin resistant |
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rpsL176(strR) |
streptomycin resistant |
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rpsL199(strR) |
streptomycin resistant |
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rpsL262(strR) |
streptomycin resistant |
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rpsL58(strR) |
streptomycin resistant |
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rpsL90(strR) |
streptomycin resistant |
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rpsL219(strR) |
streptomycin resistant |
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rpsL61(strR) |
streptomycin resistant |
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rpsL91(strR) |
streptomycin resistant |
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rpsL93(strR) |
streptomycin resistant |
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rpsL94(strR) |
streptomycin resistant |
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rpsL95(strR) |
streptomycin resistant |
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rpsL128(strR) |
streptomycin resistant |
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rpsL215(strR) |
streptomycin resistant |
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rpsL221(strR) |
streptomycin resistant |
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rpsL222(strR) |
streptomycin resistant |
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rpsL224(strR) |
streptomycin resistant |
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rpsL226(strR) |
streptomycin resistant |
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rpsL290(strR) |
streptomycin resistant |
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rpsL267(strR) |
streptomycin resistant |
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rpsL321 |
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rpsL286 |
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rpsL9 |
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| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW3304 |
Plasmid clone |
Status:Clone OK Primer 1:GCCGCAACAGTTAACCAGCTGGT Primer 2:CCAGCCTTAGGACGCTTCACGCC | |
|
Linked marker |
est. P1 cotransduction: 15% [8] | ||
|
Linked marker |
est. P1 cotransduction: 30% [8] | ||
|
Kohara Phage |
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| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Funatsu, G et al. (1977) Primary stucture of protein S12 from the small Escherichia coli ribosomal subunit. FEBS Lett. 73 12-7 PubMed
- ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
- ↑ Chakrabarti, S & Gorini, L (1975) Growth of bacteriophages MS2 and T7 on streptomycin-resistant mutants of Escherichia coli. J. Bacteriol. 121 670-4 PubMed
- ↑ Chakrabarti, SL & Gorini, L (1975) A link between streptomycin and rifampicin mutation. Proc. Natl. Acad. Sci. U.S.A. 72 2084-7 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 7.0 7.1 CGSC: The Coli Genetics Stock Center
- ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
- ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed